Rh2DG656600

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001676
Physical Location & Seq
Reverse (-)
88137561 .. 88141552
3992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG656600.1

Sequence Viewer

Length: 570 bp
ATGGAGGGAGCTCCAAGGGGAAGGACACTACAATCAGAGACCAAGTTTCAGTGCTATGAACCTGCAACCATGAAATACTTTGGATATTACCATGCATTGACACCTGATGAGGTCAAGGAGCAGGTAGCACTAGCAAGGAAGGCACAAAAAACATCGGCAAAGATCAAGCAAAGACGCATAAAGAGAGACAGAGAGGTTGTTCCCTCAATAGACATTGATTTTGCTCAGACGATAGAGATGAGAGTGCATATGGACTGCCCCGGATGCGAGAGCAAGGCTAGAAGTAACGACAACGTTGAGATAGACATGGCCCTGCAGAAGGTCACAGTGACCAGTATTGTGTCTCAATATTTTACTTACTGTGTTTCTGCCCATCCAGGGCCATTTAAGATTAATGGTGTTCCTCTTAGACAGGTGAACCAATCTTATGTTATTGGAACTTCAACCAAGGTTGACAGCTCTGGTGTTAACATGGAGAAGTTTGATGACAAGTACTTTGCCAAGGAGGGTCAAAAGAAGAAAAAGAAGGGAGAAGGCAAGTTCTTTGAAGTGGAGAAGGAGGTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

189

Amino Acids

21.51

Weight (kDa)

9.14

Isoelectric Point (pI)

33.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e PF01159 131 - 187 6.1e-18 Ribosomal protein L6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 70, 112
AclI AACGTT 1 cut(s) 294
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 2 cut(s) 319, 378
AgsI TTSAA 2 cut(s) 444, 548
AjnI CCWGG 1 cut(s) 376
AluBI AGCT 2 cut(s) 11, 459
AluI AGCT 2 cut(s) 11, 459
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 3 cut(s) 32, 180, 348
AoxI GGCC 2 cut(s) 309, 380
ArsI GACNNNNNNTTYG 4 cut(s) 203, 235, 479, 511
AseI ATTAAT 1 cut(s) 393
AspS9I GGNCC 2 cut(s) 310, 380
AsuC2I CCSGG 1 cut(s) 261
AsuHPI GGTGA 1 cut(s) 427
BanII GRGCYC 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 13
BccI CCATC 1 cut(s) 381
BciT130I CCWGG 1 cut(s) 378
BcnI CCSGG 1 cut(s) 261
BcoDI GTCTC 3 cut(s) 32, 180, 348
BfaI CTAG 2 cut(s) 131, 279
BfmI CTRYAG 1 cut(s) 314
BfuAI ACCTGC 2 cut(s) 70, 112
BmcAI AGTACT 1 cut(s) 494
Bme1390I CCNGG 2 cut(s) 261, 378
BmgT120I GGNCC 2 cut(s) 310, 380
BmrFI CCNGG 2 cut(s) 261, 378
BmsI GCATC 1 cut(s) 254
BpuMI CCSGG 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 5 cut(s) 14, 259, 377, 447, 501
Bsc4I CCNNNNNNNGG 2 cut(s) 319, 378
Bse1I ACTGG 1 cut(s) 333
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 5 cut(s) 14, 259, 377, 447, 501
BseGI GGATG 2 cut(s) 269, 373
BseLI CCNNNNNNNGG 2 cut(s) 319, 378
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 333
BshFI GGCC 2 cut(s) 311, 382
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 319, 378
BsmAI GTCTC 3 cut(s) 32, 180, 348
BsnI GGCC 2 cut(s) 311, 382
Bso31I GGTCTC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 162
BspANI GGCC 2 cut(s) 311, 382
BspCNI CTCAG 1 cut(s) 238
BspMAI CTGCAG 1 cut(s) 318
BspMI ACCTGC 2 cut(s) 70, 112
BspTNI GGTCTC 1 cut(s) 32
BsrI ACTGG 1 cut(s) 333
BssECI CCNNGG 5 cut(s) 14, 259, 377, 447, 501
BssMI GATC 1 cut(s) 162
BssT1I CCWWGG 3 cut(s) 14, 447, 501
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 2 cut(s) 328, 362
BstDEI CTNAG 2 cut(s) 225, 407
BstENI CCTNNNNNAGG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 269, 373
BstKTI GATC 1 cut(s) 165
BstMAI GTCTC 3 cut(s) 32, 180, 348
BstMBI GATC 1 cut(s) 162
BstMWI GCNNNNNNNGC 2 cut(s) 140, 264
BstNI CCWGG 1 cut(s) 378
BstSCI CCNGG 2 cut(s) 259, 376
BstSFI CTRYAG 1 cut(s) 314
BsuRI GGCC 2 cut(s) 311, 382
BtsCI GGATG 2 cut(s) 269, 373
BtsIMutI CAGTG 2 cut(s) 56, 333
BveI ACCTGC 2 cut(s) 70, 112
Cfr13I GGNCC 2 cut(s) 310, 380
CseI GACGC 1 cut(s) 183
Csp6I GTAC 1 cut(s) 493
CviAII CATG 4 cut(s) 70, 92, 307, 472
CviJI RGCY 5 cut(s) 11, 278, 311, 382, 459
CviKI_1 RGCY 5 cut(s) 11, 278, 311, 382, 459
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 2 cut(s) 225, 407
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 3 cut(s) 14, 447, 501
Eco24I GRGCYC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 32
Eco53kI GAGCTC 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 11
EcoNI CCTNNNNNAGG 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 376
EcoT14I CCWWGG 3 cut(s) 14, 447, 501
EcoT22I ATGCAT 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 3 cut(s) 14, 447, 501
FaeI CATG 4 cut(s) 73, 95, 310, 475
FaiI YATR 9 cut(s) 57, 71, 93, 179, 249, 251, 308, 429, 473
FatI CATG 4 cut(s) 69, 91, 306, 471
FauNDI CATATG 1 cut(s) 249
FokI GGATG 2 cut(s) 276, 360
FriOI GRGCYC 1 cut(s) 13
FspBI CTAG 2 cut(s) 131, 279
HaeIII GGCC 2 cut(s) 311, 382
HapII CCGG 1 cut(s) 261
HgaI GACGC 1 cut(s) 183
Hin1II CATG 4 cut(s) 73, 95, 310, 475
HincII GTYRAC 2 cut(s) 454, 469
HindII GTYRAC 2 cut(s) 454, 469
HpaI GTTAAC 1 cut(s) 469
HpaII CCGG 1 cut(s) 261
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 3 cut(s) 418, 454, 469
Hpy188I TCNGA 2 cut(s) 37, 228
Hpy8I GTNNAC 3 cut(s) 418, 454, 469
HpyAV CCTTC 6 cut(s) 15, 133, 313, 520, 527, 550
HpyCH4III ACNGT 2 cut(s) 328, 362
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 4 cut(s) 65, 95, 247, 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 264
HpyF3I CTNAG 2 cut(s) 225, 407
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 4 cut(s) 73, 95, 310, 475
KspAI GTTAAC 1 cut(s) 469
Kzo9I GATC 1 cut(s) 162
LmnI GCTCC 3 cut(s) 8, 16, 118
LweI GCATC 1 cut(s) 254
MaeI CTAG 2 cut(s) 131, 279
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 3 cut(s) 284, 322, 328
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 13
MnlI CCTC 6 cut(s) 103, 187, 214, 414, 499, 553
Mph1103I ATGCAT 1 cut(s) 97
MseI TTAA 4 cut(s) 387, 393, 468, 568
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 2 cut(s) 261, 378
MvaI CCWGG 1 cut(s) 378
MwoI GCNNNNNNNGC 2 cut(s) 140, 264
NciI CCSGG 1 cut(s) 261
NdeI CATATG 1 cut(s) 249
NdeII GATC 1 cut(s) 162
NlaIII CATG 4 cut(s) 73, 95, 310, 475
NmuCI GTSAC 2 cut(s) 322, 328
NsiI ATGCAT 1 cut(s) 97
PshBI ATTAAT 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 13
Psp1406I AACGTT 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 376
PspGI CCWGG 1 cut(s) 376
PspPI GGNCC 2 cut(s) 310, 380
PstI CTGCAG 1 cut(s) 318
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 4 cut(s) 387, 393, 468, 568
Sau3AI GATC 1 cut(s) 162
Sau96I GGNCC 2 cut(s) 310, 380
ScaI AGTACT 1 cut(s) 494
ScrFI CCNGG 2 cut(s) 261, 378
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 1 cut(s) 254
SfcI CTRYAG 1 cut(s) 314
SspI AATATT 1 cut(s) 350
SspMI CTAG 2 cut(s) 131, 279
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 259, 376
StyI CCWWGG 3 cut(s) 14, 447, 501
TaaI ACNGT 2 cut(s) 328, 362
TaiI ACGT 1 cut(s) 297
TatI WGTACW 1 cut(s) 492
Tru1I TTAA 4 cut(s) 387, 393, 468, 568
Tru9I TTAA 4 cut(s) 387, 393, 468, 568
TscAI CASTG 2 cut(s) 56, 333
TseFI GTSAC 2 cut(s) 322, 328
Tsp45I GTSAC 2 cut(s) 322, 328
TspDTI ATGAA 2 cut(s) 72, 86
TspRI CASTG 2 cut(s) 56, 333
VspI ATTAAT 1 cut(s) 393
XagI CCTNNNNNAGG 1 cut(s) 317
XspI CTAG 2 cut(s) 131, 279
ZrmI AGTACT 1 cut(s) 494
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.