Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014506.1

Orthogroup ID

OG0001676

Physical Location & Seq

Genomic Coordinates Forward (+)

26253 .. 29069

Gene Structure 2817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014506.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atggagtactgggttgagttgtttaaaaaagagaaaacccctcatgatttttataatttggataatcatatgcatcagtttaagcctttaagggaagcagcgcgaggtaagcatctcaatctcaacatatgcatcggagccaaaaaggtaaaagctgaatgtcaacagttcagggaatattgtagggcaggaaatggagaaggcttactgaaactatacctggatggttcttcaaacaaatcaagacagtggatttctcttacaacaacttcacttgggaaagctcaggctcacttcctactgaatgtgatagagggagtgttgttggacgatgggaatcagagccaggagaacagtttcatatatggacctccaagggaaaggacagcgcaatcagagaccaagtttcagtgctatgaacctgcaatcatgaaatacttgggatattaccctgcattgacacctgatgaggtcaaggagcgggtagcactagcaacgaaggcacaaaaatcatgggcaaatagtagcttcaagcaaagacgcctatttcttcggattattctcaagtatataatagaacaccaagaccttataagtgagttcagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldedh

Protein Analysis

202

Amino Acids

23.46

Weight (kDa)

9.06

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66658 AT3G66658
fragaria_vesca	FvH4_4g19600
malus_domestica	MD13G1155400.v1.1 MD16G1154800.v1.1
prunus_persica	Prupe.1G118500_v2.0.a1 Prupe.1G118500_v2.0.a1
pyrus_communis	pycom13g13230 pycom16g13120
rosa_chinensis	RchiOBHm_Chr1g0319361 RchiOBHm_Chr3g0485871 RchiOBHm_Chr4g0424861
rosa_laevigata	RLG00000007414 RLG00000030077
rosa_multiflora	Rmu_sc0005870.1_g000002 Rmu_sc0006754.1_g000006 Rmu_sc0014506.1_g000007 Rmu_sc0016377.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225740 Rroxscaffold_4G00328540 Rroxscaffold_5G00367080
rosa_rugosa	Rorug01G0166300 Rorug02G0293100 Rorug02G0554900 Rorug04G0192400 Rorug04G0199800 Rorug04G0346500
rosa_samantha	Rh1BG349600 Rh1CG003900 Rh1CG038200 Rh1DG031700 Rh1DG139100 Rh1DG263900 Rh2AG629500 Rh2CG592700 Rh2DG371100 Rh2DG650900 Rh2DG656600 Rh3AG263700 Rh3CG371400 Rh4AG036400 Rh4AG043400 Rh4AG077000 Rh4AG257500 Rh4CG273800 Rh4DG258600 Rh7BG306900
rosa_wichuraiana	Rw1G003140 Rw4G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	54, 593
Acc36I	ACCTGC	1 cut(s)	430
AccBSI	CCGCTC	1 cut(s)	481
AccII	CGCG	1 cut(s)	103
AciI	CCGC	1 cut(s)	481
AcyI	GRCGYC	1 cut(s)	541
AfaI	GTAC	1 cut(s)	8
AgsI	TTSAA	2 cut(s)	234, 532
AjnI	CCWGG	2 cut(s)	219, 345
AluBI	AGCT	3 cut(s)	155, 284, 528
AluI	AGCT	3 cut(s)	155, 284, 528
Alw26I	GTCTC	1 cut(s)	392
ApeKI	GCWGC	1 cut(s)	98
Asp700I	GAANNNNTTC	1 cut(s)	356
AspLEI	GCGC	2 cut(s)	103, 391
AspS9I	GGNCC	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	2 cut(s)	218, 326
BciT130I	CCWGG	2 cut(s)	221, 347
BcoDI	GTCTC	1 cut(s)	392
BfaI	CTAG	1 cut(s)	491
BfuAI	ACCTGC	1 cut(s)	430
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	2 cut(s)	221, 347
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	221, 347
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	3 cut(s)	82, 121, 141
BmuI	ACTGGG	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	548
BsaBI	GATNNNNATC	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	541
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	14
Bse8I	GATNNNNATC	1 cut(s)	336
BseBI	CCWGG	2 cut(s)	221, 347
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	1 cut(s)	229
BseJI	GATNNNNATC	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	392
Bso31I	GGTCTC	1 cut(s)	392
BspACI	CCGC	1 cut(s)	481
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	103
BspHI	TCATGA	2 cut(s)	43, 429
BspLI	GGNNCC	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	430
BspTNI	GGTCTC	1 cut(s)	392
BsrBI	CCGCTC	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	374
BssNI	GRCGYC	1 cut(s)	541
BssT1I	CCWWGG	1 cut(s)	374
Bst2UI	CCWGG	2 cut(s)	221, 347
Bst4CI	ACNGT	3 cut(s)	168, 249, 356
BstACI	GRCGYC	1 cut(s)	541
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	2 cut(s)	103, 391
BstMAI	GTCTC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 500
BstNI	CCWGG	2 cut(s)	221, 347
BstSCI	CCNGG	2 cut(s)	219, 345
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	254, 416
BveI	ACCTGC	1 cut(s)	430
CciI	TCATGA	2 cut(s)	43, 429
CfoI	GCGC	2 cut(s)	103, 391
Cfr13I	GGNCC	1 cut(s)	368
CseI	GACGC	1 cut(s)	549
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	3 cut(s)	44, 430, 513
CviJI	RGCY	8 cut(s)	85, 140, 155, 204, 284, 290, 345, 528
CviKI_1	RGCY	8 cut(s)	85, 140, 155, 204, 284, 290, 345, 528
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	285
DraI	TTTAAA	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	374
Eco31I	GGTCTC	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	219, 345
EcoT14I	CCWWGG	1 cut(s)	374
EcoT22I	ATGCAT	2 cut(s)	75, 134
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	3 cut(s)	47, 433, 516
FatI	CATG	3 cut(s)	43, 429, 512
FauI	CCCGC	1 cut(s)	474
FauNDI	CATATG	2 cut(s)	69, 128
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	491
GlaI	GCGC	2 cut(s)	102, 390
GluI	GCNGC	1 cut(s)	99
HgaI	GACGC	1 cut(s)	549
HhaI	GCGC	2 cut(s)	103, 391
Hin1I	GRCGYC	1 cut(s)	541
Hin1II	CATG	3 cut(s)	47, 433, 516
Hin6I	GCGC	2 cut(s)	101, 389
HinP1I	GCGC	2 cut(s)	101, 389
HincII	GTYRAC	1 cut(s)	164
HindII	GTYRAC	1 cut(s)	164
HinfI	GANTC	1 cut(s)	337
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	4 cut(s)	137, 342, 397, 555
Hpy188III	TCNNGA	3 cut(s)	44, 243, 430
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	194, 493
HpyCH4III	ACNGT	3 cut(s)	168, 249, 356
HpyCH4V	TGCA	4 cut(s)	73, 132, 425, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 500
HpyF3I	CTNAG	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	541
Hsp92II	CATG	3 cut(s)	47, 433, 516
HspAI	GCGC	2 cut(s)	101, 389
LmnI	GCTCC	2 cut(s)	137, 478
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	3 cut(s)	82, 121, 141
MaeI	CTAG	1 cut(s)	491
MbiI	CCGCTC	1 cut(s)	481
MboII	GAAGA	2 cut(s)	222, 542
MluCI	AATT	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	5 cut(s)	51, 98, 307, 381, 463
Mph1103I	ATGCAT	2 cut(s)	75, 134
MroXI	GAANNNNTTC	1 cut(s)	356
MseI	TTAA	3 cut(s)	24, 81, 89
MspR9I	CCNGG	2 cut(s)	221, 347
MvaI	CCWGG	2 cut(s)	221, 347
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	109, 500
NdeI	CATATG	2 cut(s)	69, 128
NlaIII	CATG	3 cut(s)	47, 433, 516
NlaIV	GGNNCC	1 cut(s)	139
NsiI	ATGCAT	2 cut(s)	75, 134
PagI	TCATGA	2 cut(s)	43, 429
PdmI	GAANNNNTTC	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	100
PsiI	TTATAA	2 cut(s)	54, 593
Psp6I	CCWGG	2 cut(s)	219, 345
PspGI	CCWGG	2 cut(s)	219, 345
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	368
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	3 cut(s)	24, 81, 89
SatI	GCNGC	1 cut(s)	99
Sau96I	GGNCC	1 cut(s)	368
ScaI	AGTACT	1 cut(s)	8
ScrFI	CCNGG	2 cut(s)	221, 347
SfaNI	GCATC	3 cut(s)	82, 121, 141
SinI	GGWCC	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	1 cut(s)	55
SsiI	CCGC	1 cut(s)	481
SspI	AATATT	1 cut(s)	179
SspMI	CTAG	1 cut(s)	491
StyD4I	CCNGG	2 cut(s)	219, 345
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	3 cut(s)	168, 249, 356
TasI	AATT	1 cut(s)	55
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	3 cut(s)	24, 81, 89
Tru9I	TTAA	3 cut(s)	24, 81, 89
TscAI	CASTG	2 cut(s)	254, 416
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	349, 432, 446
TspRI	CASTG	2 cut(s)	254, 416
VpaK11BI	GGWCC	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	356
XspI	CTAG	1 cut(s)	491
ZrmI	AGTACT	1 cut(s)	8
Zsp2I	ATGCAT	2 cut(s)	75, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.