Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000663

Physical Location & Seq

Genomic Coordinates Forward (+)

51861040 .. 51864614

Gene Structure 3575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0346500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGTCGGACCATCAGCTGACCCCACCAACACTCTCAAATTCCTCTGCAGCTACAGCGGCAAAATCCTCCCCCGTTACCCTGACGGCAAGCTCCGTTATCTCGGCGGCGAAACCCGCGTCCTTGCCGTCCACCGTTCCATTTCCTTCTCTGAGCTATTGCTGAAGCTGGGAGAGCTGTGCGGCACAACCGTCGGTCTCCGTTGCCAACTGCCAACCGAAGACCTCGACGCCCTTATCTCCGTCAAGTGCGACGAGGACCTCGCCAATCTCATCGAGGAGTACGACACAGCTGCGGCGGCCGCCACGCCGTTGAAGATCAGAGCCTTCCTTTCGCTCCCCGCCAACAAAATTCCGACGTCTCCTCCGTCATCCTCGGCGTCCTCCTCGAAATCCTCGTCTTCAAATCACAGTACTACATGTGCCTCCGGATCCACTCCCAGATTCTCGATGCCGTTGCCGGCGGAGCGTTGCCTCCGTCAAGTTTCGCATACGGCGCCGTTTCAGCGAGCTCCAGCAGCAGCTGGGAAAGATCCTCACTGTGCTAATTACCAAGCTCATGGAAACCCTAGCCGTCTCTACCTCGTCCACAACGGCAACCACTGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldedh

Protein Analysis

202

Amino Acids

21.65

Weight (kDa)

8.7

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1	PF00564	28 - 97	6e-17	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23210 AT1G70710
fragaria_vesca	FvH4_4g33940 FvH4_6g41450 FvH4_7g27772 FvH4_7g27773 FvH4_7g27774 FvH4_7g27775
malus_domestica	MD00G1036700.v1.1 MD07G1097500.v1.1 MD11G1195000.v1.1 MD16G1021500.v1.1
prunus_persica	Prupe.1G331000_v2.0.a1 Prupe.1G331000_v2.0.a1 Prupe.2G121700_v2.0.a1 Prupe.2G278700_v2.0.a1 Prupe.2G278800_v2.0.a1
pyrus_communis	pycom01g19480 pycom03g11560 pycom06g08760 pycom16g01920
rosa_chinensis	RchiOBHm_Chr1g0374571 RchiOBHm_Chr1g0374581 RchiOBHm_Chr1g0374591 RchiOBHm_Chr1g0374601 RchiOBHm_Chr1g0374611 RchiOBHm_Chr2g0157011 RchiOBHm_Chr4g0443471
rosa_laevigata	RLG00000005926 RLG00000026724 RLG00000026725 RLG00000026726 RLG00000026727
rosa_multiflora	Rmu_co8114132.1_g000001 Rmu_sc0004947.1_g000005 Rmu_sc0004947.1_g000006 Rmu_sc0004947.1_g000007 Rmu_sc0004947.1_g000008 Rmu_sc0009670.1_g000003 Rmu_sc0034696.1_g000001 Rmu_sc0037664.1_g000001 Rmu_ssc0000408.1_g000014
rosa_roxburghii	Rroxscaffold_4G00283360 Rroxscaffold_4G00283370 Rroxscaffold_4G00283380 Rroxscaffold_5G00384020
rosa_rugosa	Rorug01G0059600 Rorug01G0384100 Rorug01G0384200 Rorug01G0384200 Rorug02G0457500 Rorug04G0346500 Rorug04G0346500 Rorug07G0215300
rosa_samantha	Rh1AG395000 Rh1AG395100 Rh1AG395200 Rh1AG395400 Rh1CG372800 Rh1CG372900 Rh1CG373000 Rh1CG373100 Rh1DG390300 Rh1DG390400 Rh1DG390500 Rh1DG390600 Rh2BG536600 Rh2DG545500 Rh4AG402000 Rh4CG429100 Rh4DG409100
rosa_wichuraiana	Rw1G035030 Rw1G035040 Rw1G035050 Rw1G035060 Rw4G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	359
AccB1I	GGYRCC	1 cut(s)	493
AccII	CGCG	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	425
AciI	CCGC	9 cut(s)	57, 105, 115, 180, 293, 296, 300, 339, 461
AclWI	GGATC	3 cut(s)	423, 436, 524
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	38, 348
AcuI	CTGAAG	1 cut(s)	182
AcyI	GRCGYC	4 cut(s)	228, 356, 377, 494
AfaI	GTAC	2 cut(s)	281, 412
AflIII	ACRYGT	1 cut(s)	416
AgsI	TTSAA	2 cut(s)	313, 402
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	3 cut(s)	200, 363, 578
AlwI	GGATC	3 cut(s)	423, 436, 524
AlwNI	CAGNNNCTG	1 cut(s)	521
Aor13HI	TCCGGA	1 cut(s)	425
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	4 cut(s)	48, 290, 515, 518
ApoI	RAATTY	2 cut(s)	38, 348
ArsI	GACNNNNNNTTYG	4 cut(s)	102, 134, 380, 412
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	2 cut(s)	8, 256
AvaII	GGWCC	2 cut(s)	8, 256
BamHI	GGATCC	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	493
BanII	GRGCYC	1 cut(s)	511
BbsI	GAAGAC	2 cut(s)	225, 390
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	4 cut(s)	60, 277, 527, 530
BccI	CCATC	1 cut(s)	19
BceAI	ACGGC	8 cut(s)	100, 110, 292, 436, 481, 507, 555, 607
BcgI	CGANNNNNNTGC	6 cut(s)	172, 206, 272, 306, 436, 470
BcoDI	GTCTC	3 cut(s)	200, 363, 578
BfaI	CTAG	1 cut(s)	567
BfmI	CTRYAG	2 cut(s)	46, 52
BfoI	RGCGCY	1 cut(s)	497
BmcAI	AGTACT	1 cut(s)	412
Bme18I	GGWCC	2 cut(s)	8, 256
BmgT120I	GGNCC	2 cut(s)	8, 256
BmiI	GGNNCC	2 cut(s)	430, 495
BmsI	GCATC	1 cut(s)	438
BpiI	GAAGAC	2 cut(s)	225, 390
BpmI	CTGGAG	1 cut(s)	495
BsaHI	GRCGYC	4 cut(s)	228, 356, 377, 494
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	372
BsaWI	WCCGGW	1 cut(s)	425
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	605
BseAI	TCCGGA	1 cut(s)	425
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	368
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	3 cut(s)	290, 351, 373
BseX3I	CGGCCG	1 cut(s)	297
BseXI	GCAGC	4 cut(s)	60, 277, 527, 530
BseYI	CCCAGC	2 cut(s)	166, 521
Bsh1236I	CGCG	1 cut(s)	117
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	299
BshNI	GGYRCC	1 cut(s)	493
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	511
BsiSI	CCGG	2 cut(s)	426, 458
BsmAI	GTCTC	3 cut(s)	200, 363, 578
BsmBI	CGTCTC	2 cut(s)	363, 578
BsnI	GGCC	1 cut(s)	299
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp13I	TCCGGA	1 cut(s)	425
Bsp143I	GATC	3 cut(s)	315, 428, 529
BspACI	CCGC	9 cut(s)	57, 105, 115, 180, 293, 296, 300, 339, 461
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	1 cut(s)	142
BspEI	TCCGGA	1 cut(s)	425
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	430, 495
BspMAI	CTGCAG	1 cut(s)	50
BspPI	GGATC	3 cut(s)	423, 436, 524
BspT107I	GGYRCC	1 cut(s)	493
BspTNI	GGTCTC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	605
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	3 cut(s)	315, 428, 529
BssNI	GRCGYC	4 cut(s)	228, 356, 377, 494
Bst4CI	ACNGT	4 cut(s)	134, 190, 410, 539
BstACI	GRCGYC	4 cut(s)	228, 356, 377, 494
BstC8I	GCNNGC	3 cut(s)	89, 459, 507
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	368
BstFNI	CGCG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	3 cut(s)	318, 431, 532
BstMAI	GTCTC	3 cut(s)	200, 363, 578
BstMBI	GATC	3 cut(s)	315, 428, 529
BstMCI	CGRYCG	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	420
BstSFI	CTRYAG	2 cut(s)	46, 52
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	4 cut(s)	60, 277, 527, 530
BstV2I	GAAGAC	2 cut(s)	225, 390
BstX2I	RGATCY	2 cut(s)	428, 529
BstXI	CCANNNNNNTGG	1 cut(s)	557
BstYI	RGATCY	2 cut(s)	428, 529
BstZI	CGGCCG	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	368
BtsIMutI	CAGTG	2 cut(s)	535, 598
Cac8I	GCNNGC	3 cut(s)	89, 459, 507
CaiI	CAGNNNCTG	1 cut(s)	521
CciNI	GCGGCCGC	1 cut(s)	297
CfoI	GCGC	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	2 cut(s)	8, 256
CseI	GACGC	3 cut(s)	106, 236, 366
Csp6I	GTAC	2 cut(s)	280, 411
CviAII	CATG	2 cut(s)	417, 557
CviQI	GTAC	2 cut(s)	280, 411
DdeI	CTNAG	1 cut(s)	150
DinI	GGCGCC	1 cut(s)	495
DpnI	GATC	3 cut(s)	317, 430, 531
DpnII	GATC	3 cut(s)	315, 428, 529
EaeI	YGGCCR	1 cut(s)	297
EagI	CGGCCG	1 cut(s)	297
EciI	GGCGGA	1 cut(s)	476
Ecl136II	GAGCTC	1 cut(s)	509
EclXI	CGGCCG	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	2 cut(s)	8, 256
Eco52I	CGGCCG	1 cut(s)	297
Eco53kI	GAGCTC	1 cut(s)	509
Eco57I	CTGAAG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	509
EcoO109I	RGGNCCY	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	511
EgeI	GGCGCC	1 cut(s)	495
EheI	GGCGCC	1 cut(s)	495
Esp3I	CGTCTC	2 cut(s)	363, 578
FaeI	CATG	2 cut(s)	420, 560
FaiI	YATR	3 cut(s)	418, 489, 558
FatI	CATG	2 cut(s)	416, 556
FauI	CCCGC	2 cut(s)	122, 346
FokI	GGATG	1 cut(s)	355
FriOI	GRGCYC	1 cut(s)	511
FspBI	CTAG	1 cut(s)	567
GlaI	GCGC	1 cut(s)	495
GsaI	CCCAGC	2 cut(s)	170, 525
GsuI	CTGGAG	1 cut(s)	495
HaeII	RGCGCY	1 cut(s)	497
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	2 cut(s)	426, 458
HgaI	GACGC	3 cut(s)	106, 236, 366
HhaI	GCGC	1 cut(s)	496
Hin1I	GRCGYC	4 cut(s)	228, 356, 377, 494
Hin1II	CATG	2 cut(s)	420, 560
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HinfI	GANTC	1 cut(s)	441
HpaII	CCGG	2 cut(s)	426, 458
Hpy166II	GTNNAC	2 cut(s)	130, 586
Hpy188I	TCNGA	4 cut(s)	8, 151, 320, 354
Hpy188III	TCNNGA	2 cut(s)	426, 445
Hpy8I	GTNNAC	2 cut(s)	130, 586
Hpy99I	CGWCG	4 cut(s)	194, 230, 254, 358
HpyAV	CCTTC	2 cut(s)	154, 334
HpyCH4III	ACNGT	4 cut(s)	134, 190, 410, 539
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	1 cut(s)	48
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	356
Hsp92I	GRCGYC	4 cut(s)	228, 356, 377, 494
Hsp92II	CATG	2 cut(s)	420, 560
HspAI	GCGC	1 cut(s)	494
KasI	GGCGCC	1 cut(s)	493
Kpn2I	TCCGGA	1 cut(s)	425
KroI	GCCGGC	1 cut(s)	457
KroNI	GCCGGC	1 cut(s)	459
Kzo9I	GATC	3 cut(s)	315, 428, 529
LmnI	GCTCC	4 cut(s)	96, 339, 463, 514
LpnPI	CCDG	8 cut(s)	93, 152, 439, 451, 471, 507, 525, 586
Lsp1109I	GCAGC	4 cut(s)	60, 277, 527, 530
LweI	GCATC	1 cut(s)	438
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	3 cut(s)	317, 430, 531
MboI	GATC	3 cut(s)	315, 428, 529
MboII	GAAGA	3 cut(s)	230, 325, 390
MflI	RGATCY	2 cut(s)	428, 529
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	3 cut(s)	38, 348, 544
Mly113I	GGCGCC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	377
MroI	TCCGGA	1 cut(s)	425
MroNI	GCCGGC	1 cut(s)	457
MspA1I	CMGCKG	4 cut(s)	17, 57, 290, 521
MspI	CCGG	2 cut(s)	426, 458
MvnI	CGCG	1 cut(s)	117
NaeI	GCCGGC	1 cut(s)	459
NarI	GGCGCC	1 cut(s)	494
NdeII	GATC	3 cut(s)	315, 428, 529
NgoMIV	GCCGGC	1 cut(s)	457
NlaIII	CATG	2 cut(s)	420, 560
NlaIV	GGNNCC	2 cut(s)	430, 495
NmeAIII	GCCGAG	2 cut(s)	81, 353
NotI	GCGGCCGC	1 cut(s)	297
NspI	RCATGY	1 cut(s)	420
PciI	ACATGT	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	3 cut(s)	279, 362, 392
PdiI	GCCGGC	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	441
PluTI	GGCGCC	1 cut(s)	497
PpuMI	RGGWCCY	1 cut(s)	256
PscI	ACATGT	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	511
Psp5II	RGGWCCY	1 cut(s)	256
PspFI	CCCAGC	2 cut(s)	166, 521
PspN4I	GGNNCC	2 cut(s)	430, 495
PspPI	GGNCC	2 cut(s)	8, 256
PspPPI	RGGWCCY	1 cut(s)	256
PstI	CTGCAG	1 cut(s)	50
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	2 cut(s)	428, 529
PvuII	CAGCTG	3 cut(s)	17, 290, 521
RsaI	GTAC	2 cut(s)	281, 412
RsaNI	GTAC	2 cut(s)	280, 411
SacI	GAGCTC	1 cut(s)	511
Sau3AI	GATC	3 cut(s)	315, 428, 529
Sau96I	GGNCC	2 cut(s)	8, 256
ScaI	AGTACT	1 cut(s)	412
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	1 cut(s)	438
SfcI	CTRYAG	2 cut(s)	46, 52
SfoI	GGCGCC	1 cut(s)	495
SinI	GGWCC	2 cut(s)	8, 256
Sse9I	AATT	3 cut(s)	38, 348, 544
SsiI	CCGC	9 cut(s)	57, 105, 115, 180, 293, 296, 300, 339, 461
SspDI	GGCGCC	1 cut(s)	493
SspMI	CTAG	1 cut(s)	567
SstI	GAGCTC	1 cut(s)	511
TaaI	ACNGT	4 cut(s)	134, 190, 410, 539
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	4 cut(s)	225, 273, 386, 446
TaqII	GACCGA	1 cut(s)	182
TasI	AATT	3 cut(s)	38, 348, 544
TatI	WGTACW	1 cut(s)	410
TauI	GCSGC	6 cut(s)	60, 108, 183, 296, 299, 302
TfiI	GAWTC	1 cut(s)	441
TscAI	CASTG	2 cut(s)	542, 605
TseI	GCWGC	4 cut(s)	48, 290, 515, 518
TspGWI	ACGGA	5 cut(s)	83, 188, 229, 354, 464
TspRI	CASTG	2 cut(s)	542, 605
VpaK11BI	GGWCC	2 cut(s)	8, 256
XapI	RAATTY	2 cut(s)	38, 348
XceI	RCATGY	1 cut(s)	420
XspI	CTAG	1 cut(s)	567
ZraI	GACGTC	1 cut(s)	357
ZrmI	AGTACT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.