RchiOBHm_Chr1g0374581

Endoglucanase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
62364727 .. 62367160
2434 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59838

Sequence Viewer

Length: 1548 bp
ATGATGAGTAAAATCATGTGCAGGAATACCCTTCCAAGGGTGTTAATAATATTAGCAGGGATGATCACAGCAGCAAGTTTGGCTTCGTCACACAACTACACTGATGCTTTGTCGAAGTGCATATTGTTTTTCGAAGGGCAGAGATCTGGAAACTTACCGCCTTCGCAAAGAATGACTTGGAGGAAAGATTCGGCCTTGAAGGATGGCTCTGATGTTGGTATGGATCTTGTAGGGGGTTACTATGATGCAGGAGACAATGTGAAGTTCAACTTTCCCATGGCCTTCACAACAACAATGTTGTCGTGGAGCGTGCTAGAGTTCGGAAATCTAATGGGATCGGACCTTCAACAAGCTATGGAAGCTATAAGATGGGGGACTGATTATTTTCTGAAAGCCACAAACGTTCCTGATTCGGTTGTGGGTGTAGTTGGCGACCCCATTGGTGACCACAGTTGTTCTCAAAGGCCTGAGGACATGGACACCCCAAGAACCTCTTATGTAGTCACCAAAGAAAAGCCAGGTTCAGAAGTCTCAGCCGAAATTGCAGCTGCATTTGCAGCTTCTTCCTTGGTGTTCAAAGATTCAGACAATAACTACTCTACTTTGCTTCTTAACCGATCAATGCAGGTCTTTGAATTTGCAGATAAGTATAGGGGGTCTTACAATGACAGTATTGGGGAAGGAGCATGCCCCTTTTACTGTGATTTTAGTGGCTACATGGATGAATTGCTCTGGGGAGCTTCTTGGCTATACAAGGCAACCGGAGCAGCTGATTATTGGAATTATGTGAGAGAGAACATAGACAAAATGGAGTCCACTGTAATAAGAAATTTCAATGGGGATCCTGTTTCATACATAAATGGTGCTGTCACTGAATTTGGATGGGATTCAAAGCATTCCGGGATTAACGTACTTGTTTCTCAGTGGGTAATGACTGATCCGAACAATTCTAGTCCTTTTATTCTCAATGCGGATAAGTTTGTATGCTCGATTTTGCCAGAATCACCTACTCAAAAATCGGTCACATATTCACCAGGAGGGCTGTTGTTCAAACCAGGAGGAAGTAACCTGCAACATTCAACCTCAATATCATATCTTCTTATGGTTTATGCTGGGTACATGAAAGCTACGAACAAAGTCGTAAATTGTGGCAATAATGTGGTCATCACTCCAGATCGGCTAGTAAATTTCACCAAAGGACAGGTTGATTATATACTAGGAAGCAACCCATTAGGCATGTCATACATGGTCGGATTCGGGCCACAGTTTCCTCAGAAAATACATCACCGCGGTTCTGTTCTACCATCCCTTGATCAACACCCACAACACATCGATTGCCGCGGAGGAGACGTGTATTGGCAAAGCCAAGGTCCTAATCTGAATTTGCTAACAGGTGCAATTGTGGGAGGTCCTGCTGAAAATGATACGTTCCAAGATTCTCGATATAATGTTCCACAATCAGAGCCAACTACATACATCAACGCTCCTTTTGTGGGAGTTTTGGCTTACTTTAAATCACTATTTCCCCAACTGAATCCAAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

515

Amino Acids

56.74

Weight (kDa)

5.33

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 33 - 501 2e-145 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000663)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 616, 1077
AccII CGCG 2 cut(s) 1290, 1341
AciI CCGC 6 cut(s) 158, 971, 1288, 1290, 1339, 1341
AclI AACGTT 1 cut(s) 402
AclWI GGATC 5 cut(s) 231, 343, 836, 849, 932
AcsI RAATTY 5 cut(s) 635, 829, 875, 1186, 1381
AfaI GTAC 2 cut(s) 912, 1118
AfiI CCNNNNNNNGG 3 cut(s) 36, 37, 1493
AflIII ACRYGT 1 cut(s) 1350
AgsI TTSAA 9 cut(s) 199, 268, 347, 577, 635, 835, 891, 1051, 1080
AjiI CACGTC 1 cut(s) 1351
AjnI CCWGG 3 cut(s) 517, 1033, 1054
AluBI AGCT 7 cut(s) 353, 362, 548, 560, 740, 770, 1127
AluI AGCT 7 cut(s) 353, 362, 548, 560, 740, 770, 1127
Alw26I GTCTC 3 cut(s) 246, 535, 1341
AlwI GGATC 5 cut(s) 231, 343, 836, 849, 932
AoxI GGCC 4 cut(s) 192, 279, 464, 1259
ApeKI GCWGC 5 cut(s) 71, 545, 548, 557, 767
ApoI RAATTY 5 cut(s) 635, 829, 875, 1186, 1381
ArsI GACNNNNNNTTYG 2 cut(s) 1354, 1386
AspS9I GGNCC 4 cut(s) 340, 1259, 1370, 1409
AsuC2I CCSGG 1 cut(s) 901
AsuHPI GGTGA 6 cut(s) 455, 496, 996, 1023, 1183, 1277
AsuII TTCGAA 1 cut(s) 132
AvaII GGWCC 3 cut(s) 340, 1370, 1409
AxyI CCTNAGG 1 cut(s) 468
BamHI GGATCC 1 cut(s) 841
BbvI GCAGC 5 cut(s) 83, 535, 557, 569, 779
BccI CCATC 4 cut(s) 197, 363, 876, 1312
BciT130I CCWGG 3 cut(s) 519, 1035, 1056
BclI TGATCA 2 cut(s) 63, 1312
BcnI CCSGG 1 cut(s) 901
BcoDI GTCTC 3 cut(s) 246, 535, 1341
BfaI CTAG 4 cut(s) 314, 951, 1181, 1217
BfuAI ACCTGC 2 cut(s) 616, 1077
BglII AGATCT 1 cut(s) 143
BisI GCNGC 6 cut(s) 72, 546, 549, 558, 768, 1339
BlsI GCNGC 6 cut(s) 73, 547, 550, 559, 769, 1340
Bme1390I CCNGG 4 cut(s) 519, 901, 1035, 1056
Bme18I GGWCC 3 cut(s) 340, 1370, 1409
BmgBI CACGTC 1 cut(s) 1351
BmgT120I GGNCC 4 cut(s) 340, 1259, 1370, 1409
BmiI GGNNCC 1 cut(s) 843
BmrFI CCNGG 4 cut(s) 519, 901, 1035, 1056
BmsI GCATC 2 cut(s) 94, 235
BpmI CTGGAG 1 cut(s) 1155
Bpu14I TTCGAA 1 cut(s) 132
BpuMI CCSGG 1 cut(s) 901
Bsa29I ATCGAT 1 cut(s) 1332
BsaJI CCNNGG 6 cut(s) 35, 276, 567, 1288, 1339, 1366
BsaWI WCCGGW 1 cut(s) 761
BsaXI ACNNNNNCTCC 4 cut(s) 243, 273, 1335, 1365
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 37, 1493
Bse21I CCTNAGG 1 cut(s) 468
BseBI CCWGG 3 cut(s) 519, 1035, 1056
BseCI ATCGAT 1 cut(s) 1332
BseDI CCNNGG 6 cut(s) 35, 276, 567, 1288, 1339, 1366
BseGI GGATG 5 cut(s) 66, 208, 727, 887, 1304
BseLI CCNNNNNNNGG 3 cut(s) 36, 37, 1493
BseMII CTCAG 4 cut(s) 459, 546, 935, 1286
BseRI GAGGAG 1 cut(s) 1359
BseXI GCAGC 5 cut(s) 83, 535, 557, 569, 779
BseYI CCCAGC 1 cut(s) 1112
BsgI GTGCAG 1 cut(s) 40
Bsh1236I CGCG 2 cut(s) 1290, 1341
BshFI GGCC 4 cut(s) 194, 281, 466, 1261
BshVI ATCGAT 1 cut(s) 1332
BsiSI CCGG 2 cut(s) 762, 900
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 3 cut(s) 36, 37, 1493
BsmAI GTCTC 3 cut(s) 246, 535, 1341
BsmBI CGTCTC 1 cut(s) 1341
BsmFI GGGAC 1 cut(s) 388
BsmI GAATGC 1 cut(s) 895
BsnI GGCC 4 cut(s) 194, 281, 466, 1261
Bsp119I TTCGAA 1 cut(s) 132
Bsp143I GATC 9 cut(s) 63, 143, 223, 335, 617, 841, 937, 1174, 1312
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 6 cut(s) 158, 971, 1288, 1290, 1339, 1341
BspANI GGCC 4 cut(s) 194, 281, 466, 1261
BspCNI CTCAG 4 cut(s) 460, 545, 934, 1285
BspDI ATCGAT 1 cut(s) 1332
BspFNI CGCG 2 cut(s) 1290, 1341
BspLI GGNNCC 1 cut(s) 843
BspMI ACCTGC 2 cut(s) 616, 1077
BspPI GGATC 5 cut(s) 231, 343, 836, 849, 932
BspT104I TTCGAA 1 cut(s) 132
BssECI CCNNGG 6 cut(s) 35, 276, 567, 1288, 1339, 1366
BssMI GATC 9 cut(s) 63, 143, 223, 335, 617, 841, 937, 1174, 1312
BssT1I CCWWGG 4 cut(s) 35, 276, 567, 1366
Bst2UI CCWGG 3 cut(s) 519, 1035, 1056
Bst4CI ACNGT 5 cut(s) 452, 671, 701, 820, 1266
BstBI TTCGAA 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 311, 688
BstDEI CTNAG 4 cut(s) 468, 532, 921, 1272
BstDSI CCRYGG 3 cut(s) 276, 1288, 1339
BstEII GGTNACC 1 cut(s) 443
BstF5I GGATG 5 cut(s) 66, 208, 727, 887, 1304
BstFNI CGCG 2 cut(s) 1290, 1341
BstKTI GATC 9 cut(s) 66, 146, 226, 338, 620, 844, 940, 1177, 1315
BstMAI GTCTC 3 cut(s) 246, 535, 1341
BstMBI GATC 9 cut(s) 63, 143, 223, 335, 617, 841, 937, 1174, 1312
BstMWI GCNNNNNNNGC 6 cut(s) 80, 359, 542, 554, 557, 764
BstNI CCWGG 3 cut(s) 519, 1035, 1056
BstNSI RCATGY 2 cut(s) 690, 1240
BstPI GGTNACC 1 cut(s) 443
BstSCI CCNGG 4 cut(s) 517, 899, 1033, 1054
BstUI CGCG 2 cut(s) 1290, 1341
BstV1I GCAGC 5 cut(s) 83, 535, 557, 569, 779
BstX2I RGATCY 3 cut(s) 143, 223, 841
BstYI RGATCY 3 cut(s) 143, 223, 841
Bsu15I ATCGAT 1 cut(s) 1332
Bsu36I CCTNAGG 1 cut(s) 468
BsuRI GGCC 4 cut(s) 194, 281, 466, 1261
BsuTUI ATCGAT 1 cut(s) 1332
BtgI CCRYGG 3 cut(s) 276, 1288, 1339
BtrI CACGTC 1 cut(s) 1351
BtsCI GGATG 5 cut(s) 66, 208, 727, 887, 1304
BtsIMutI CAGTG 4 cut(s) 99, 816, 870, 929
BveI ACCTGC 2 cut(s) 616, 1077
Cac8I GCNNGC 2 cut(s) 311, 688
Cfr13I GGNCC 4 cut(s) 340, 1259, 1370, 1409
Cfr42I CCGCGG 2 cut(s) 1291, 1342
ClaI ATCGAT 1 cut(s) 1332
Csp6I GTAC 2 cut(s) 911, 1117
CviAII CATG 8 cut(s) 16, 277, 475, 687, 718, 1120, 1237, 1246
CviQI GTAC 2 cut(s) 911, 1117
DdeI CTNAG 4 cut(s) 468, 532, 921, 1272
DpnI GATC 9 cut(s) 65, 145, 225, 337, 619, 843, 939, 1176, 1314
DpnII GATC 9 cut(s) 63, 143, 223, 335, 617, 841, 937, 1174, 1312
DraI TTTAAA 1 cut(s) 1513
Eco130I CCWWGG 4 cut(s) 35, 276, 567, 1366
Eco147I AGGCCT 1 cut(s) 466
Eco47I GGWCC 3 cut(s) 340, 1370, 1409
Eco81I CCTNAGG 1 cut(s) 468
Eco91I GGTNACC 1 cut(s) 443
EcoO109I RGGNCCY 2 cut(s) 1370, 1409
EcoO65I GGTNACC 1 cut(s) 443
EcoRII CCWGG 3 cut(s) 517, 1033, 1054
EcoT14I CCWWGG 4 cut(s) 35, 276, 567, 1366
ErhI CCWWGG 4 cut(s) 35, 276, 567, 1366
Esp3I CGTCTC 1 cut(s) 1341
FaeI CATG 8 cut(s) 19, 280, 478, 690, 721, 1123, 1240, 1249
FalI AAGNNNNNCTT 8 cut(s) 67, 99, 160, 192, 254, 286, 478, 510
FaqI GGGAC 1 cut(s) 388
FatI CATG 8 cut(s) 15, 276, 474, 686, 717, 1119, 1236, 1245
FbaI TGATCA 2 cut(s) 63, 1312
Fnu4HI GCNGC 6 cut(s) 72, 546, 549, 558, 768, 1339
FokI GGATG 5 cut(s) 73, 215, 734, 894, 1291
Fsp4HI GCNGC 6 cut(s) 72, 546, 549, 558, 768, 1339
FspBI CTAG 4 cut(s) 314, 951, 1181, 1217
GluI GCNGC 6 cut(s) 72, 546, 549, 558, 768, 1339
GsaI CCCAGC 1 cut(s) 1116
GsuI CTGGAG 1 cut(s) 1155
HaeIII GGCC 4 cut(s) 194, 281, 466, 1261
HapII CCGG 2 cut(s) 762, 900
Hin1II CATG 8 cut(s) 19, 280, 478, 690, 721, 1123, 1240, 1249
HinfI GANTC 9 cut(s) 188, 410, 581, 812, 887, 1001, 1254, 1436, 1534
HpaII CCGG 2 cut(s) 762, 900
HphI GGTGA 6 cut(s) 455, 496, 996, 1023, 1183, 1277
Hpy166II GTNNAC 1 cut(s) 816
Hpy188III TCNNGA 4 cut(s) 147, 407, 1172, 1440
Hpy8I GTNNAC 1 cut(s) 816
HpyAV CCTTC 7 cut(s) 41, 128, 171, 193, 292, 353, 674
HpyCH4III ACNGT 5 cut(s) 452, 671, 701, 820, 1266
HpyCH4IV ACGT 4 cut(s) 402, 909, 1350, 1427
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 359, 542, 554, 557, 764
HpyF3I CTNAG 4 cut(s) 468, 532, 921, 1272
HpySE526I ACGT 4 cut(s) 402, 909, 1350, 1427
Hsp92II CATG 8 cut(s) 19, 280, 478, 690, 721, 1123, 1240, 1249
Ksp22I TGATCA 2 cut(s) 63, 1312
KspI CCGCGG 2 cut(s) 1291, 1342
Kzo9I GATC 9 cut(s) 63, 143, 223, 335, 617, 841, 937, 1174, 1312
LmnI GCTCC 5 cut(s) 306, 683, 737, 764, 1489
Lsp1109I GCAGC 5 cut(s) 83, 535, 557, 569, 779
LweI GCATC 2 cut(s) 94, 235
MaeI CTAG 4 cut(s) 314, 951, 1181, 1217
MaeII ACGT 4 cut(s) 402, 909, 1350, 1427
MaeIII GTNAC 7 cut(s) 87, 236, 443, 502, 868, 1021, 1064
MalI GATC 9 cut(s) 65, 145, 225, 337, 619, 843, 939, 1176, 1314
MboI GATC 9 cut(s) 63, 143, 223, 335, 617, 841, 937, 1174, 1312
MboII GAAGA 2 cut(s) 555, 1088
MfeI CAATTG 1 cut(s) 1398
MflI RGATCY 3 cut(s) 143, 223, 841
MlyI GAGTC 1 cut(s) 821
MmeI TCCRAC 1 cut(s) 1231
MnlI CCTC 9 cut(s) 174, 463, 502, 1031, 1052, 1093, 1281, 1337, 1400
MseI TTAA 4 cut(s) 44, 612, 906, 1512
MspA1I CMGCKG 4 cut(s) 548, 770, 1290, 1341
MspI CCGG 2 cut(s) 762, 900
MspR9I CCNGG 4 cut(s) 519, 901, 1035, 1056
MunI CAATTG 1 cut(s) 1398
Mva1269I GAATGC 1 cut(s) 895
MvaI CCWGG 3 cut(s) 519, 1035, 1056
MvnI CGCG 2 cut(s) 1290, 1341
MwoI GCNNNNNNNGC 6 cut(s) 80, 359, 542, 554, 557, 764
NciI CCSGG 1 cut(s) 901
NcoI CCATGG 1 cut(s) 276
NdeII GATC 9 cut(s) 63, 143, 223, 335, 617, 841, 937, 1174, 1312
NlaIII CATG 8 cut(s) 19, 280, 478, 690, 721, 1123, 1240, 1249
NlaIV GGNNCC 1 cut(s) 843
NmuCI GTSAC 5 cut(s) 87, 443, 502, 868, 1021
NspI RCATGY 2 cut(s) 690, 1240
NspV TTCGAA 1 cut(s) 132
PaeI GCATGC 1 cut(s) 690
PceI AGGCCT 1 cut(s) 466
PctI GAATGC 1 cut(s) 895
PfeI GAWTC 8 cut(s) 188, 410, 581, 887, 1001, 1254, 1436, 1534
PfoI TCCNGGA 1 cut(s) 899
PkrI GCNGC 6 cut(s) 73, 547, 550, 559, 769, 1340
PleI GAGTC 1 cut(s) 820
PpsI GAGTC 1 cut(s) 820
PpuMI RGGWCCY 2 cut(s) 1370, 1409
Psp1406I AACGTT 1 cut(s) 402
Psp5II RGGWCCY 2 cut(s) 1370, 1409
Psp6I CCWGG 3 cut(s) 517, 1033, 1054
PspEI GGTNACC 1 cut(s) 443
PspFI CCCAGC 1 cut(s) 1112
PspGI CCWGG 3 cut(s) 517, 1033, 1054
PspN4I GGNNCC 1 cut(s) 843
PspPI GGNCC 4 cut(s) 340, 1259, 1370, 1409
PspPPI RGGWCCY 2 cut(s) 1370, 1409
PsuI RGATCY 3 cut(s) 143, 223, 841
PvuII CAGCTG 2 cut(s) 548, 770
RsaI GTAC 2 cut(s) 912, 1118
RsaNI GTAC 2 cut(s) 911, 1117
SacII CCGCGG 2 cut(s) 1291, 1342
SaqAI TTAA 4 cut(s) 44, 612, 906, 1512
SatI GCNGC 6 cut(s) 72, 546, 549, 558, 768, 1339
Sau3AI GATC 9 cut(s) 63, 143, 223, 335, 617, 841, 937, 1174, 1312
Sau96I GGNCC 4 cut(s) 340, 1259, 1370, 1409
SchI GAGTC 1 cut(s) 821
ScrFI CCNGG 4 cut(s) 519, 901, 1035, 1056
SfaNI GCATC 2 cut(s) 94, 235
Sfr303I CCGCGG 2 cut(s) 1291, 1342
SfuI TTCGAA 1 cut(s) 132
SgrBI CCGCGG 2 cut(s) 1291, 1342
SinI GGWCC 3 cut(s) 340, 1370, 1409
SphI GCATGC 1 cut(s) 690
SseBI AGGCCT 1 cut(s) 466
SsiI CCGC 6 cut(s) 158, 971, 1288, 1290, 1339, 1341
SspI AATATT 1 cut(s) 51
SspMI CTAG 4 cut(s) 314, 951, 1181, 1217
StuI AGGCCT 1 cut(s) 466
StyD4I CCNGG 4 cut(s) 517, 899, 1033, 1054
StyI CCWWGG 4 cut(s) 35, 276, 567, 1366
TaaI ACNGT 5 cut(s) 452, 671, 701, 820, 1266
TaiI ACGT 4 cut(s) 405, 912, 1353, 1430
TaqI TCGA 5 cut(s) 113, 132, 989, 1332, 1441
TaqII GACCGA 1 cut(s) 1009
TauI GCSGC 1 cut(s) 1341
TfiI GAWTC 8 cut(s) 188, 410, 581, 887, 1001, 1254, 1436, 1534
Tru1I TTAA 4 cut(s) 44, 612, 906, 1512
Tru9I TTAA 4 cut(s) 44, 612, 906, 1512
TscAI CASTG 4 cut(s) 106, 823, 877, 929
TseFI GTSAC 5 cut(s) 87, 443, 502, 868, 1021
TseI GCWGC 5 cut(s) 71, 545, 548, 557, 767
Tsp45I GTSAC 5 cut(s) 87, 443, 502, 868, 1021
TspDTI ATGAA 3 cut(s) 738, 840, 1136
TspRI CASTG 4 cut(s) 106, 823, 877, 929
VpaK11BI GGWCC 3 cut(s) 340, 1370, 1409
XapI RAATTY 5 cut(s) 635, 829, 875, 1186, 1381
XceI RCATGY 2 cut(s) 690, 1240
XspI CTAG 4 cut(s) 314, 951, 1181, 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.