Rh1CG373100

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000663
Physical Location & Seq
Forward (+)
64251614 .. 64252292
679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG373100.1

Sequence Viewer

Length: 474 bp
ATGCCTTGGAACTTGGAAGCCATTAGATGGGCGACTGACTATTTGCTTAAATCCACTAGTGCTAGTGGTTCTGTTGTTGGTGTAGTCGGTGACCCCAATGGTGACCACACTTGTTGGGAAAGGCCTGAAGACATGGACACTCCTCGAACATCTTACATAGTAACCACACAAAAGCCAGGTTCTGAAGTTTCAACAGAGACTGCAGCCGCATTTGCAGCTTCTTCCATAGTGTTTAGTGGTTCTGACAAAGGATATTCTACCTTGCTTCTTACCCGAGCAAGACAGGTGTTTGAATTTGCTGATAAATATAGGCGTTCTTACAATGACAGTATTGGGAGTGGAGCATGCCCATTTTACTGTGACTTCAATGGCTACAAGGTAAAATATTTATTCAATCAGCTGACCTCAACTTGTGTTTCCAACTTTGCTAATCAATTTGCCTTGCAGGATGAATTGATTTGGGGAGCAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

157

Amino Acids

17.32

Weight (kDa)

4.9

Isoelectric Point (pI)

26.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 5 - 157 1.6e-40 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23210 AT1G70710
fragaria_vesca FvH4_4g33940 FvH4_6g41450 FvH4_7g27772 FvH4_7g27773 FvH4_7g27774 FvH4_7g27775
malus_domestica MD00G1036700.v1.1 MD07G1097500.v1.1 MD11G1195000.v1.1 MD16G1021500.v1.1
prunus_persica Prupe.1G331000_v2.0.a1 Prupe.1G331000_v2.0.a1 Prupe.2G121700_v2.0.a1 Prupe.2G278700_v2.0.a1 Prupe.2G278800_v2.0.a1
pyrus_communis pycom01g19480 pycom03g11560 pycom06g08760 pycom16g01920
rosa_chinensis RchiOBHm_Chr1g0374571 RchiOBHm_Chr1g0374581 RchiOBHm_Chr1g0374591 RchiOBHm_Chr1g0374601 RchiOBHm_Chr1g0374611 RchiOBHm_Chr2g0157011 RchiOBHm_Chr4g0443471
rosa_laevigata RLG00000005926 RLG00000026724 RLG00000026725 RLG00000026726 RLG00000026727
rosa_multiflora Rmu_co8114132.1_g000001 Rmu_sc0004947.1_g000005 Rmu_sc0004947.1_g000006 Rmu_sc0004947.1_g000007 Rmu_sc0004947.1_g000008 Rmu_sc0009670.1_g000003 Rmu_sc0034696.1_g000001 Rmu_sc0037664.1_g000001 Rmu_ssc0000408.1_g000014
rosa_roxburghii Rroxscaffold_4G00283360 Rroxscaffold_4G00283370 Rroxscaffold_4G00283380 Rroxscaffold_5G00384020
rosa_rugosa Rorug01G0059600 Rorug01G0384100 Rorug01G0384200 Rorug01G0384200 Rorug02G0457500 Rorug04G0346500 Rorug04G0346500 Rorug07G0215300
rosa_samantha Rh1AG395000 Rh1AG395100 Rh1AG395200 Rh1AG395400 Rh1CG372800 Rh1CG372900 Rh1CG373000 Rh1CG373100 Rh1DG390300 Rh1DG390400 Rh1DG390500 Rh1DG390600 Rh2BG536600 Rh2DG545500 Rh4AG402000 Rh4CG429100 Rh4DG409100
rosa_wichuraiana Rw1G035030 Rw1G035040 Rw1G035050 Rw1G035060 Rw4G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 27
AciI CCGC 1 cut(s) 207
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 2 cut(s) 147, 204
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 4 cut(s) 192, 293, 367, 394
AhlI ACTAGT 1 cut(s) 56
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 2 cut(s) 218, 400
AluI AGCT 2 cut(s) 218, 400
Alw26I GTCTC 1 cut(s) 191
AlwNI CAGNNNCTG 2 cut(s) 182, 200
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 3 cut(s) 203, 215, 467
ApoI RAATTY 1 cut(s) 293
ArsI GACNNNNNNTTYG 2 cut(s) 25, 57
AsuHPI GGTGA 2 cut(s) 101, 113
AvaI CYCGRG 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 215, 227
BccI CCATC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 191
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 2 cut(s) 57, 63
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 4 cut(s) 204, 207, 216, 468
BlsI GCNGC 4 cut(s) 205, 208, 217, 469
Bme1390I CCNGG 1 cut(s) 177
BmeT110I CYCGRG 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 2 cut(s) 215, 227
BshFI GGCC 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 273
BspACI CCGC 1 cut(s) 207
BspANI GGCC 1 cut(s) 124
BspMAI CTGCAG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 2 cut(s) 329, 359
BstC8I GCNNGC 1 cut(s) 346
BstEII GGTNACC 2 cut(s) 89, 101
BstF5I GGATG 1 cut(s) 454
BstMAI GTCTC 1 cut(s) 191
BstMWI GCNNNNNNNGC 2 cut(s) 212, 215
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 348
BstPI GGTNACC 2 cut(s) 89, 101
BstSCI CCNGG 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 215, 227
BstV2I GAAGAC 1 cut(s) 135
BsuRI GGCC 1 cut(s) 124
BtsCI GGATG 1 cut(s) 454
Cac8I GCNNGC 1 cut(s) 346
CaiI CAGNNNCTG 2 cut(s) 182, 200
CspCI CAANNNNNGTGG 2 cut(s) 95, 130
CviAII CATG 2 cut(s) 133, 345
CviJI RGCY 7 cut(s) 20, 124, 175, 206, 218, 372, 400
CviKI_1 RGCY 7 cut(s) 20, 124, 175, 206, 218, 372, 400
Eco130I CCWWGG 1 cut(s) 5
Eco147I AGGCCT 1 cut(s) 124
Eco57I CTGAAG 2 cut(s) 147, 204
Eco88I CYCGRG 1 cut(s) 273
Eco91I GGTNACC 2 cut(s) 89, 101
EcoO65I GGTNACC 2 cut(s) 89, 101
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 5
ErhI CCWWGG 1 cut(s) 5
FaeI CATG 2 cut(s) 136, 348
FaiI YATR 6 cut(s) 134, 158, 227, 309, 346, 472
FatI CATG 2 cut(s) 132, 344
Fnu4HI GCNGC 4 cut(s) 204, 207, 216, 468
FokI GGATG 1 cut(s) 461
Fsp4HI GCNGC 4 cut(s) 204, 207, 216, 468
FspBI CTAG 2 cut(s) 57, 63
GluI GCNGC 4 cut(s) 204, 207, 216, 468
HaeIII GGCC 1 cut(s) 124
Hin1II CATG 2 cut(s) 136, 348
HphI GGTGA 2 cut(s) 101, 113
Hpy188I TCNGA 2 cut(s) 184, 244
HpyCH4III ACNGT 2 cut(s) 329, 359
HpyCH4V TGCA 3 cut(s) 203, 215, 445
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 215
Hsp92II CATG 2 cut(s) 136, 348
LmnI GCTCC 2 cut(s) 341, 464
LpnPI CCDG 5 cut(s) 138, 162, 189, 269, 431
Lsp1109I GCAGC 2 cut(s) 215, 227
MaeI CTAG 2 cut(s) 57, 63
MaeIII GTNAC 4 cut(s) 89, 101, 160, 359
MboII GAAGA 2 cut(s) 140, 213
MluCI AATT 3 cut(s) 293, 434, 452
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 2 cut(s) 153, 415
MseI TTAA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 400
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 212, 215
NlaIII CATG 2 cut(s) 136, 348
NmuCI GTSAC 3 cut(s) 89, 101, 359
NspI RCATGY 1 cut(s) 348
PaeI GCATGC 1 cut(s) 348
PceI AGGCCT 1 cut(s) 124
PflMI CCANNNNNTGG 1 cut(s) 27
PkrI GCNGC 4 cut(s) 205, 208, 217, 469
Psp6I CCWGG 1 cut(s) 175
PspEI GGTNACC 2 cut(s) 89, 101
PspGI CCWGG 1 cut(s) 175
PstI CTGCAG 1 cut(s) 205
PstNI CAGNNNCTG 2 cut(s) 182, 200
PvuII CAGCTG 1 cut(s) 400
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 4 cut(s) 204, 207, 216, 468
ScrFI CCNGG 1 cut(s) 177
SetI ASST 7 cut(s) 181, 220, 263, 288, 381, 402, 407
SfcI CTRYAG 1 cut(s) 201
SpeI ACTAGT 1 cut(s) 56
SphI GCATGC 1 cut(s) 348
Sse9I AATT 3 cut(s) 293, 434, 452
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 1 cut(s) 207
SspI AATATT 1 cut(s) 386
SspMI CTAG 2 cut(s) 57, 63
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 1 cut(s) 5
TaaI ACNGT 2 cut(s) 329, 359
TaqI TCGA 1 cut(s) 145
TasI AATT 3 cut(s) 293, 434, 452
TauI GCSGC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseFI GTSAC 3 cut(s) 89, 101, 359
TseI GCWGC 3 cut(s) 203, 215, 467
Tsp45I GTSAC 3 cut(s) 89, 101, 359
TspDTI ATGAA 1 cut(s) 465
Van91I CCANNNNNTGG 1 cut(s) 27
XapI RAATTY 1 cut(s) 293
XceI RCATGY 1 cut(s) 348
XspI CTAG 2 cut(s) 57, 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.