Rmu_sc0004947.1_g000007

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004947.1
OG0000663
Physical Location & Seq
Forward (+)
33515 .. 35878
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004947.1_g000007.1.cds

Sequence Viewer

Length: 987 bp
atggcaaccgccgcaaaagtgactccacataactacgcagattctctgtcgaagtccattttattttttgaaggccagagatctggcaagttaccgaattctcaacgaatgaattggaggaaagattctgccctacatgatggcagcgatgttcatagggatctggtggggggttaccatgatgctggtgacaatgtgaagttcaactttcccatggccttcacaacaacattgttgtcatggagcgttctagagtttggagatttgatgggatctgaacttcaacatgctgtggaagctataagatgggcaactgattattttcttaaagccacaaatgatcctggttcagtagttggcgtagtaggcgaccccaacggagatcatgcttgttggcaaaggcctgaagacgtggataccccaagaaccacatatgtggtaactaaagaaaaaccaggttcagaagtttctgcagagattgcagccatgcttgcagcttcctctatagtgtttaaccaatcagacaaagcctactctgactcgcttcttaagcgagccatccaagtgtttcaatttgcagatcagtatcagggatcttacaatactagtattggagacggagcctgcccattttactgcgattttagtggctacatggttgattatatactcggaagcaacccattggggatgtcttatatggtgggatatggtacaaaatttcctcaaagaatacatcatcgtgcttctgtggtaccttccatggataagcatccacagcacatgaggtgccatgacggtgatcagtatttcaaaagccaagctccgaatcaaaacttgctaataggagcagttgtcaggggaccagccgagaatgatacatttgaagattctcgatatgatcctggacaatcagagccagttacatacaacaatgccccttttgttggtgttttggcattctttaaggctctatataatttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

328

Amino Acids

36.29

Weight (kDa)

5.5

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23210 AT1G70710
fragaria_vesca FvH4_4g33940 FvH4_6g41450 FvH4_7g27772 FvH4_7g27773 FvH4_7g27774 FvH4_7g27775
malus_domestica MD00G1036700.v1.1 MD07G1097500.v1.1 MD11G1195000.v1.1 MD16G1021500.v1.1
prunus_persica Prupe.1G331000_v2.0.a1 Prupe.1G331000_v2.0.a1 Prupe.2G121700_v2.0.a1 Prupe.2G278700_v2.0.a1 Prupe.2G278800_v2.0.a1
pyrus_communis pycom01g19480 pycom03g11560 pycom06g08760 pycom16g01920
rosa_chinensis RchiOBHm_Chr1g0374571 RchiOBHm_Chr1g0374581 RchiOBHm_Chr1g0374591 RchiOBHm_Chr1g0374601 RchiOBHm_Chr1g0374611 RchiOBHm_Chr2g0157011 RchiOBHm_Chr4g0443471
rosa_laevigata RLG00000005926 RLG00000026724 RLG00000026725 RLG00000026726 RLG00000026727
rosa_multiflora Rmu_co8114132.1_g000001 Rmu_sc0004947.1_g000005 Rmu_sc0004947.1_g000006 Rmu_sc0004947.1_g000007 Rmu_sc0004947.1_g000008 Rmu_sc0009670.1_g000003 Rmu_sc0034696.1_g000001 Rmu_sc0037664.1_g000001 Rmu_ssc0000408.1_g000014
rosa_roxburghii Rroxscaffold_4G00283360 Rroxscaffold_4G00283370 Rroxscaffold_4G00283380 Rroxscaffold_5G00384020
rosa_rugosa Rorug01G0059600 Rorug01G0384100 Rorug01G0384200 Rorug01G0384200 Rorug02G0457500 Rorug04G0346500 Rorug04G0346500 Rorug07G0215300
rosa_samantha Rh1AG395000 Rh1AG395100 Rh1AG395200 Rh1AG395400 Rh1CG372800 Rh1CG372900 Rh1CG373000 Rh1CG373100 Rh1DG390300 Rh1DG390400 Rh1DG390500 Rh1DG390600 Rh2BG536600 Rh2DG545500 Rh4AG402000 Rh4CG429100 Rh4DG409100
rosa_wichuraiana Rw1G035030 Rw1G035040 Rw1G035050 Rw1G035060 Rw4G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 754
AccB1I GGYRCC 2 cut(s) 754, 789
AciI CCGC 2 cut(s) 9, 12
AclWI GGATC 5 cut(s) 168, 280, 335, 601, 896
AcsI RAATTY 2 cut(s) 97, 719
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 2 cut(s) 715, 756
AfiI CCNNNNNNNGG 1 cut(s) 947
AflII CTTAAG 1 cut(s) 548
AgsI TTSAA 6 cut(s) 71, 205, 284, 572, 814, 887
AhlI ACTAGT 1 cut(s) 605
AjiI CACGTC 1 cut(s) 412
AjnI CCWGG 3 cut(s) 343, 454, 904
AleI CACNNNNGTG 1 cut(s) 434
AluBI AGCT 3 cut(s) 299, 497, 824
AluI AGCT 3 cut(s) 299, 497, 824
Alw26I GTCTC 1 cut(s) 609
AlwI GGATC 5 cut(s) 168, 280, 335, 601, 896
AoxI GGCC 3 cut(s) 73, 216, 401
ApeKI GCWGC 3 cut(s) 144, 482, 494
ApoI RAATTY 2 cut(s) 97, 719
Asp718I GGTACC 1 cut(s) 754
AspS9I GGNCC 1 cut(s) 863
AsuHPI GGTGA 2 cut(s) 200, 812
AvaII GGWCC 1 cut(s) 863
BanI GGYRCC 2 cut(s) 754, 789
BbsI GAAGAC 1 cut(s) 414
BbvI GCAGC 3 cut(s) 156, 494, 506
BccI CCATC 4 cut(s) 134, 262, 300, 566
BciT130I CCWGG 3 cut(s) 345, 456, 906
BciVI GTATCC 1 cut(s) 409
BclI TGATCA 1 cut(s) 802
BcoDI GTCTC 1 cut(s) 609
BcuI ACTAGT 1 cut(s) 605
BfaI CTAG 2 cut(s) 251, 606
BfmI CTRYAG 2 cut(s) 471, 504
BfrI CTTAAG 1 cut(s) 548
BfuI GTATCC 1 cut(s) 409
BglII AGATCT 1 cut(s) 80
BisI GCNGC 4 cut(s) 12, 145, 483, 495
BlsI GCNGC 4 cut(s) 13, 146, 484, 496
Bme1390I CCNGG 3 cut(s) 345, 456, 906
Bme18I GGWCC 1 cut(s) 863
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 863
BmiI GGNNCC 4 cut(s) 622, 756, 791, 864
BmrFI CCNGG 3 cut(s) 345, 456, 906
BmsI GCATC 2 cut(s) 172, 781
BpiI GAAGAC 1 cut(s) 414
BsaBI GATNNNNATC 2 cut(s) 585, 771
BsaJI CCNNGG 2 cut(s) 213, 762
BsaXI ACNNNNNCTCC 2 cut(s) 840, 870
Bsc4I CCNNNNNNNGG 1 cut(s) 947
Bse1I ACTGG 1 cut(s) 920
Bse8I GATNNNNATC 2 cut(s) 585, 771
BseBI CCWGG 3 cut(s) 345, 456, 906
BseDI CCNNGG 2 cut(s) 213, 762
BseGI GGATG 3 cut(s) 558, 696, 772
BseJI GATNNNNATC 2 cut(s) 585, 771
BseLI CCNNNNNNNGG 1 cut(s) 947
BseNI ACTGG 1 cut(s) 920
BseXI GCAGC 3 cut(s) 156, 494, 506
BshFI GGCC 3 cut(s) 75, 218, 403
BshNI GGYRCC 2 cut(s) 754, 789
BslFI GGGAC 1 cut(s) 876
BslI CCNNNNNNNGG 1 cut(s) 947
BsmAI GTCTC 1 cut(s) 609
BsmBI CGTCTC 1 cut(s) 609
BsmFI GGGAC 1 cut(s) 876
BsmI GAATGC 1 cut(s) 959
BsnI GGCC 3 cut(s) 75, 218, 403
Bsp143I GATC 9 cut(s) 80, 160, 272, 340, 382, 580, 593, 802, 901
Bsp19I CCATGG 2 cut(s) 213, 762
BspACI CCGC 2 cut(s) 9, 12
BspANI GGCC 3 cut(s) 75, 218, 403
BspLI GGNNCC 4 cut(s) 622, 756, 791, 864
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 5 cut(s) 168, 280, 335, 601, 896
BspT107I GGYRCC 2 cut(s) 754, 789
BspTI CTTAAG 1 cut(s) 548
BsrI ACTGG 1 cut(s) 920
BssECI CCNNGG 2 cut(s) 213, 762
BssMI GATC 9 cut(s) 80, 160, 272, 340, 382, 580, 593, 802, 901
BssT1I CCWWGG 2 cut(s) 213, 762
Bst2UI CCWGG 3 cut(s) 345, 456, 906
Bst4CI ACNGT 1 cut(s) 800
BstAFI CTTAAG 1 cut(s) 548
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 3 cut(s) 492, 555, 625
BstDSI CCRYGG 2 cut(s) 213, 762
BstEII GGTNACC 1 cut(s) 173
BstF5I GGATG 3 cut(s) 558, 696, 772
BstKTI GATC 9 cut(s) 83, 163, 275, 343, 385, 583, 596, 805, 904
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 9 cut(s) 80, 160, 272, 340, 382, 580, 593, 802, 901
BstMWI GCNNNNNNNGC 7 cut(s) 11, 296, 366, 479, 491, 550, 778
BstNI CCWGG 3 cut(s) 345, 456, 906
BstNSI RCATGY 1 cut(s) 290
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 3 cut(s) 343, 454, 904
BstSFI CTRYAG 2 cut(s) 471, 504
BstV1I GCAGC 3 cut(s) 156, 494, 506
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 4 cut(s) 80, 160, 272, 593
BstXI CCANNNNNNTGG 3 cut(s) 83, 185, 436
BstYI RGATCY 4 cut(s) 80, 160, 272, 593
BsuI GTATCC 1 cut(s) 409
BsuRI GGCC 3 cut(s) 75, 218, 403
BtgI CCRYGG 2 cut(s) 213, 762
BtgZI GCGATG 1 cut(s) 162
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 3 cut(s) 558, 696, 772
Cac8I GCNNGC 3 cut(s) 492, 555, 625
Cfr13I GGNCC 1 cut(s) 863
CsiI ACCWGGT 1 cut(s) 454
Csp6I GTAC 2 cut(s) 714, 755
CviQI GTAC 2 cut(s) 714, 755
DpnI GATC 9 cut(s) 82, 162, 274, 342, 384, 582, 595, 804, 903
DpnII GATC 9 cut(s) 80, 160, 272, 340, 382, 580, 593, 802, 901
Eco130I CCWWGG 2 cut(s) 213, 762
Eco147I AGGCCT 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 863
Eco57I CTGAAG 1 cut(s) 426
Eco91I GGTNACC 1 cut(s) 173
EcoO65I GGTNACC 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 97
EcoRII CCWGG 3 cut(s) 343, 454, 904
EcoT14I CCWWGG 2 cut(s) 213, 762
ErhI CCWWGG 2 cut(s) 213, 762
Esp3I CGTCTC 1 cut(s) 609
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FaqI GGGAC 1 cut(s) 876
FauNDI CATATG 1 cut(s) 433
FbaI TGATCA 1 cut(s) 802
Fnu4HI GCNGC 4 cut(s) 12, 145, 483, 495
FokI GGATG 3 cut(s) 545, 703, 759
Fsp4HI GCNGC 4 cut(s) 12, 145, 483, 495
FspBI CTAG 2 cut(s) 251, 606
GluI GCNGC 4 cut(s) 12, 145, 483, 495
HaeIII GGCC 3 cut(s) 75, 218, 403
HinfI GANTC 6 cut(s) 22, 41, 125, 539, 829, 890
HphI GGTGA 2 cut(s) 200, 812
Hpy188I TCNGA 7 cut(s) 277, 463, 523, 538, 674, 828, 916
Hpy188III TCNNGA 2 cut(s) 251, 894
HpyAV CCTTC 3 cut(s) 65, 229, 768
HpyCH4III ACNGT 1 cut(s) 800
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 4 cut(s) 473, 482, 494, 578
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 296, 366, 479, 491, 550, 778
HpySE526I ACGT 1 cut(s) 411
KpnI GGTACC 1 cut(s) 758
Ksp22I TGATCA 1 cut(s) 802
Kzo9I GATC 9 cut(s) 80, 160, 272, 340, 382, 580, 593, 802, 901
LmnI GCTCC 4 cut(s) 243, 620, 829, 848
Lsp1109I GCAGC 3 cut(s) 156, 494, 506
LweI GCATC 2 cut(s) 172, 781
MabI ACCWGGT 1 cut(s) 454
MaeI CTAG 2 cut(s) 251, 606
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 6 cut(s) 19, 90, 173, 188, 439, 922
MalI GATC 9 cut(s) 82, 162, 274, 342, 384, 582, 595, 804, 903
MboI GATC 9 cut(s) 80, 160, 272, 340, 382, 580, 593, 802, 901
MboII GAAGA 2 cut(s) 419, 899
MflI RGATCY 4 cut(s) 80, 160, 272, 593
MluCI AATT 5 cut(s) 97, 112, 572, 719, 979
MlyI GAGTC 2 cut(s) 16, 533
MnlI CCTC 4 cut(s) 111, 511, 735, 780
MseI TTAA 4 cut(s) 327, 513, 549, 966
MslI CAYNNNNRTG 4 cut(s) 434, 563, 741, 798
MspCI CTTAAG 1 cut(s) 548
MspR9I CCNGG 3 cut(s) 345, 456, 906
Mva1269I GAATGC 1 cut(s) 959
MvaI CCWGG 3 cut(s) 345, 456, 906
MwoI GCNNNNNNNGC 7 cut(s) 11, 296, 366, 479, 491, 550, 778
NcoI CCATGG 2 cut(s) 213, 762
NdeI CATATG 1 cut(s) 433
NdeII GATC 9 cut(s) 80, 160, 272, 340, 382, 580, 593, 802, 901
NlaIV GGNNCC 4 cut(s) 622, 756, 791, 864
NmeAIII GCCGAG 1 cut(s) 895
NmuCI GTSAC 2 cut(s) 19, 188
NspI RCATGY 1 cut(s) 290
OliI CACNNNNGTG 1 cut(s) 434
PceI AGGCCT 1 cut(s) 403
PctI GAATGC 1 cut(s) 959
PfeI GAWTC 4 cut(s) 41, 125, 829, 890
PfoI TCCNGGA 1 cut(s) 904
PkrI GCNGC 4 cut(s) 13, 146, 484, 496
PleI GAGTC 2 cut(s) 16, 533
PpsI GAGTC 2 cut(s) 16, 533
Psp6I CCWGG 3 cut(s) 343, 454, 904
PspEI GGTNACC 1 cut(s) 173
PspGI CCWGG 3 cut(s) 343, 454, 904
PspN4I GGNNCC 4 cut(s) 622, 756, 791, 864
PspPI GGNCC 1 cut(s) 863
PstI CTGCAG 1 cut(s) 475
PsuI RGATCY 4 cut(s) 80, 160, 272, 593
RsaI GTAC 2 cut(s) 715, 756
RsaNI GTAC 2 cut(s) 714, 755
RseI CAYNNNNRTG 4 cut(s) 434, 563, 741, 798
SaqAI TTAA 4 cut(s) 327, 513, 549, 966
SatI GCNGC 4 cut(s) 12, 145, 483, 495
Sau3AI GATC 9 cut(s) 80, 160, 272, 340, 382, 580, 593, 802, 901
Sau96I GGNCC 1 cut(s) 863
SchI GAGTC 2 cut(s) 16, 533
ScrFI CCNGG 3 cut(s) 345, 456, 906
SetI ASST 7 cut(s) 301, 414, 460, 499, 760, 791, 826
SexAI ACCWGGT 1 cut(s) 454
SfaNI GCATC 2 cut(s) 172, 781
SfcI CTRYAG 2 cut(s) 471, 504
SinI GGWCC 1 cut(s) 863
SmiMI CAYNNNNRTG 4 cut(s) 434, 563, 741, 798
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
SpeI ACTAGT 1 cut(s) 605
Sse9I AATT 5 cut(s) 97, 112, 572, 719, 979
SseBI AGGCCT 1 cut(s) 403
SsiI CCGC 2 cut(s) 9, 12
SspMI CTAG 2 cut(s) 251, 606
StuI AGGCCT 1 cut(s) 403
StyD4I CCNGG 3 cut(s) 343, 454, 904
StyI CCWWGG 2 cut(s) 213, 762
TaaI ACNGT 1 cut(s) 800
TaiI ACGT 1 cut(s) 414
TaqI TCGA 2 cut(s) 50, 895
TasI AATT 5 cut(s) 97, 112, 572, 719, 979
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 4 cut(s) 41, 125, 829, 890
Tru1I TTAA 4 cut(s) 327, 513, 549, 966
Tru9I TTAA 4 cut(s) 327, 513, 549, 966
TseFI GTSAC 2 cut(s) 19, 188
TseI GCWGC 3 cut(s) 144, 482, 494
Tsp45I GTSAC 2 cut(s) 19, 188
TspDTI ATGAA 2 cut(s) 125, 143
TspGWI ACGGA 2 cut(s) 393, 633
Vha464I CTTAAG 1 cut(s) 548
VpaK11BI GGWCC 1 cut(s) 863
XapI RAATTY 2 cut(s) 97, 719
XbaI TCTAGA 1 cut(s) 250
XceI RCATGY 1 cut(s) 290
XspI CTAG 2 cut(s) 251, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.