MD11G1195000.v1.1

Endoglucanase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
27987995 .. 27988907
913 bp
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UTR
Exon/CDS
Intron
MD11G1195000.v1.1.491

Sequence Viewer

Length: 339 bp
ATGGTGGGCTTAGTGGGGGCGATTATGGTGGCGATGGTGATGACGGTGGTTTCTTCTTCTTCAACTCATGACTATGGAGATGCTTTGACCAAGAGCATTTTGTTCTTTGAAGGTCAGCGGTCGGGCAAGTTACCTTCTTCTCAGAGAATGACTTGGAGGAAGGATTCCGCTCTTCGCGACGGCTTCGAGATTGGCGTAGACTTAGTAGGAGGTTACTACGATGCCGGCGACAACGTGAAGTTCAACTTTCCGATGGCATTCTCCACAACAATGCTGGCATGGAGCGTTTTAGAGTTCGGGAAGGACATGAGCTCGGACTTGCCGCATGCCCTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.2

Weight (kDa)

5.12

Isoelectric Point (pI)

34.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 25 - 108 1.6e-34 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000663)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 198
AccII CGCG 1 cut(s) 177
AciI CCGC 3 cut(s) 118, 168, 323
AgsI TTSAA 3 cut(s) 63, 110, 244
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
Alw21I GWGCWC 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 49
BanII GRGCYC 1 cut(s) 314
Bbv12I GWGCWC 1 cut(s) 314
BccI CCATC 2 cut(s) 28, 247
BceAI ACGGC 1 cut(s) 196
BisI GCNGC 1 cut(s) 323
BlsI GCNGC 1 cut(s) 324
BmsI GCATC 2 cut(s) 70, 211
Bse118I RCCGGY 1 cut(s) 224
BseMII CTCAG 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 314
BsiSI CCGG 1 cut(s) 225
BsmI GAATGC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 314
Bsp68I TCGCGA 1 cut(s) 177
BspACI CCGC 3 cut(s) 118, 168, 323
BspCNI CTCAG 1 cut(s) 154
BspFNI CGCG 1 cut(s) 177
BspHI TCATGA 1 cut(s) 67
BspQI GCTCTTC 1 cut(s) 177
BsrBI CCGCTC 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 177
BstC8I GCNNGC 3 cut(s) 226, 276, 327
BstDEI CTNAG 3 cut(s) 10, 141, 202
BstFNI CGCG 1 cut(s) 177
BstMCI CGRYCG 1 cut(s) 122
BstNSI RCATGY 1 cut(s) 329
BstUI CGCG 1 cut(s) 177
BtgZI GCGATG 1 cut(s) 47
BtuMI TCGCGA 1 cut(s) 177
Cac8I GCNNGC 3 cut(s) 226, 276, 327
CciI TCATGA 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 224
CviAII CATG 4 cut(s) 68, 279, 307, 326
CviJI RGCY 3 cut(s) 9, 183, 312
CviKI_1 RGCY 3 cut(s) 9, 183, 312
DdeI CTNAG 3 cut(s) 10, 141, 202
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Ecl136II GAGCTC 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 312
EcoICRI GAGCTC 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 314
FaeI CATG 4 cut(s) 71, 282, 310, 329
FaiI YATR 6 cut(s) 26, 69, 75, 280, 308, 327
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FatI CATG 4 cut(s) 67, 278, 306, 325
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 323
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 323
GluI GCNGC 1 cut(s) 323
HapII CCGG 1 cut(s) 225
Hin1II CATG 4 cut(s) 71, 282, 310, 329
HinfI GANTC 1 cut(s) 164
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 3 cut(s) 144, 252, 316
Hpy188III TCNNGA 4 cut(s) 68, 176, 187, 298
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 4 cut(s) 104, 144, 154, 295
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 234
HpyF3I CTNAG 3 cut(s) 10, 141, 202
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 4 cut(s) 71, 282, 310, 329
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 2 cut(s) 238, 260
LweI GCATC 2 cut(s) 70, 211
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 129, 212
MbiI CCGCTC 1 cut(s) 170
MboII GAAGA 5 cut(s) 45, 48, 51, 129, 164
MhlI GDGCHC 1 cut(s) 314
MnlI CCTC 2 cut(s) 150, 203
MroNI GCCGGC 1 cut(s) 224
MslI CAYNNNNRTG 2 cut(s) 72, 269
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 1 cut(s) 225
Mva1269I GAATGC 1 cut(s) 257
MvnI CGCG 1 cut(s) 177
NaeI GCCGGC 1 cut(s) 226
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 4 cut(s) 71, 282, 310, 329
NruI TCGCGA 1 cut(s) 177
NspI RCATGY 1 cut(s) 329
PaeI GCATGC 1 cut(s) 329
PagI TCATGA 1 cut(s) 67
PciSI GCTCTTC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 225
PctI GAATGC 1 cut(s) 257
PdiI GCCGGC 1 cut(s) 226
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 1 cut(s) 324
Psp124BI GAGCTC 1 cut(s) 314
RruI TCGCGA 1 cut(s) 177
RseI CAYNNNNRTG 2 cut(s) 72, 269
SacI GAGCTC 1 cut(s) 314
SapI GCTCTTC 1 cut(s) 177
SatI GCNGC 1 cut(s) 323
SduI GDGCHC 1 cut(s) 314
SetI ASST 5 cut(s) 115, 136, 214, 237, 314
SfaNI GCATC 2 cut(s) 70, 211
SmiMI CAYNNNNRTG 2 cut(s) 72, 269
SphI GCATGC 1 cut(s) 329
SsiI CCGC 3 cut(s) 118, 168, 323
SstI GAGCTC 1 cut(s) 314
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 186
TauI GCSGC 1 cut(s) 325
TfiI GAWTC 1 cut(s) 164
XceI RCATGY 1 cut(s) 329
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.