Rh1AG395100

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000663
Physical Location & Seq
Forward (+)
62334110 .. 62335967
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG395100.1

Sequence Viewer

Length: 1353 bp
ATGACAGGCCTGTTCCACCCTCAGATGGATCTTGTAGGGGGTTACTATGATGCAGGAGACAATGTGAAGTTCAACTTTCCCATGGCCTTCACAACAACAATGTTGTCGTGGAGCGTGCTAGAGTTCGGAAATCTAATGGGATCGGACCTTCAACATGCTATGGAAGCTATAAGATGGGGGACTGATTATTTTCTGAAAGCCACAAACGTTCCTGATTCGGTTGTGGGTGTAGTTGGCGATCCCATTGGTGACCACAGTTGTTCTCAAAGGCCTGAGGACATGGACACCCCAAGAACCTCTTATGTAGTCACCAAAGAAAAGCCAGGTTCAGAAGTCTCAGCCGAAATTGCAGCTGCATTTGCAGCTTCTTCCTTGGTGTTCAAATATTCAGACAATAACTACTCTACTTTGCTTCTTAACCGATCAATGCAGGTCTTTGAATTTGCAGATAAGTATAGGGGGTCTTACAATGACAGTATTGGGGAAGGAGCATGCCCCTTTTACTGTGATTTTAGTGGCTACATGGATGAATTGCTCTGGGGAGCTTCTTGGCTATACAAGGCAACCGGAGCAGCTGATTATTGGAATTATGTGAGAGAGAACATAGACAAAATGGAGTCCACTGTAATAAGAAATTTCAATGGGGATCCTGTTTCATACATAAATGGTGCTGTCACTGAATTTGGATGGGATTCAAAGCATTCCGGGATTAACGTACTTGTTTCTCAGTGGGTAATGACTGATCCGAACAATTCTAGTCCTTTTATTCTCAATGCGGATAAGTTTGTATGCTCGATTTTGCCAGAATCACCTACTCAAAAATCGGTCACATATTCACCAGGAGGGCTGTTGTTCAAACCAGGAGGAAGTAACCTGCAACATTCAACCTCAATATCATATCTTCTTATGGTTTATGCTGGGTACATGAAAGCTACGAACAAAGTCGTAAATTGTGGCAATAATGTGGTCATCACTCCAGATCGGCTAGTAAATTTCACCAAAGGACAGGTTGATTATATACTAGGAAGCAACCCATTAGGCATGTCATACATGGTCGGATTCGGGCCACAGTTTCCTCAGAAAATACATCACCGCGGTTCTGTTCTACCATCCCTTGATCAACACCCACAACACATCGATTGCCGCGGAGGAGACGTGTATTGGCAAAGCCAAGGTCCTAATCTGAATTTGCTAACAGGTGCAATTGTGGGAGGTCCTGCTGAAAATGATACGTTCCAAGATTCTCGATATAATGTTCCACAATCAGAGCCAACTACATACATCAACGCTCCTTTTGTGGGAGTTTTGGCTTACTTTAAATCACTATTTCCCCAACTGAATCCAAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

450

Amino Acids

49.72

Weight (kDa)

5.1

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 8 - 436 5.4e-128 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23210 AT1G70710
fragaria_vesca FvH4_4g33940 FvH4_6g41450 FvH4_7g27772 FvH4_7g27773 FvH4_7g27774 FvH4_7g27775
malus_domestica MD00G1036700.v1.1 MD07G1097500.v1.1 MD11G1195000.v1.1 MD16G1021500.v1.1
prunus_persica Prupe.1G331000_v2.0.a1 Prupe.1G331000_v2.0.a1 Prupe.2G121700_v2.0.a1 Prupe.2G278700_v2.0.a1 Prupe.2G278800_v2.0.a1
pyrus_communis pycom01g19480 pycom03g11560 pycom06g08760 pycom16g01920
rosa_chinensis RchiOBHm_Chr1g0374571 RchiOBHm_Chr1g0374581 RchiOBHm_Chr1g0374591 RchiOBHm_Chr1g0374601 RchiOBHm_Chr1g0374611 RchiOBHm_Chr2g0157011 RchiOBHm_Chr4g0443471
rosa_laevigata RLG00000005926 RLG00000026724 RLG00000026725 RLG00000026726 RLG00000026727
rosa_multiflora Rmu_co8114132.1_g000001 Rmu_sc0004947.1_g000005 Rmu_sc0004947.1_g000006 Rmu_sc0004947.1_g000007 Rmu_sc0004947.1_g000008 Rmu_sc0009670.1_g000003 Rmu_sc0034696.1_g000001 Rmu_sc0037664.1_g000001 Rmu_ssc0000408.1_g000014
rosa_roxburghii Rroxscaffold_4G00283360 Rroxscaffold_4G00283370 Rroxscaffold_4G00283380 Rroxscaffold_5G00384020
rosa_rugosa Rorug01G0059600 Rorug01G0384100 Rorug01G0384200 Rorug01G0384200 Rorug02G0457500 Rorug04G0346500 Rorug04G0346500 Rorug07G0215300
rosa_samantha Rh1AG395000 Rh1AG395100 Rh1AG395200 Rh1AG395400 Rh1CG372800 Rh1CG372900 Rh1CG373000 Rh1CG373100 Rh1DG390300 Rh1DG390400 Rh1DG390500 Rh1DG390600 Rh2BG536600 Rh2DG545500 Rh4AG402000 Rh4CG429100 Rh4DG409100
rosa_wichuraiana Rw1G035030 Rw1G035040 Rw1G035050 Rw1G035060 Rw4G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 421, 882
AccII CGCG 2 cut(s) 1095, 1146
AciI CCGC 5 cut(s) 776, 1093, 1095, 1144, 1146
AclI AACGTT 1 cut(s) 207
AclWI GGATC 6 cut(s) 36, 148, 233, 641, 654, 737
AcsI RAATTY 5 cut(s) 440, 634, 680, 991, 1186
AfaI GTAC 2 cut(s) 717, 923
AfiI CCNNNNNNNGG 2 cut(s) 25, 1298
AflIII ACRYGT 1 cut(s) 1155
AgsI TTSAA 8 cut(s) 73, 152, 382, 440, 640, 696, 856, 885
AjiI CACGTC 1 cut(s) 1156
AjnI CCWGG 3 cut(s) 322, 838, 859
AluBI AGCT 6 cut(s) 167, 353, 365, 545, 575, 932
AluI AGCT 6 cut(s) 167, 353, 365, 545, 575, 932
Alw26I GTCTC 3 cut(s) 51, 340, 1146
AlwI GGATC 6 cut(s) 36, 148, 233, 641, 654, 737
AoxI GGCC 4 cut(s) 7, 84, 269, 1064
ApeKI GCWGC 4 cut(s) 350, 353, 362, 572
ApoI RAATTY 5 cut(s) 440, 634, 680, 991, 1186
ArsI GACNNNNNNTTYG 2 cut(s) 1159, 1191
AspS9I GGNCC 4 cut(s) 145, 1064, 1175, 1214
AsuC2I CCSGG 1 cut(s) 706
AsuHPI GGTGA 6 cut(s) 260, 301, 801, 828, 988, 1082
AvaII GGWCC 3 cut(s) 145, 1175, 1214
AxyI CCTNAGG 1 cut(s) 273
BamHI GGATCC 1 cut(s) 646
BbvI GCAGC 4 cut(s) 340, 362, 374, 584
BccI CCATC 4 cut(s) 19, 168, 681, 1117
BciT130I CCWGG 3 cut(s) 324, 840, 861
BclI TGATCA 1 cut(s) 1117
BcnI CCSGG 1 cut(s) 706
BcoDI GTCTC 3 cut(s) 51, 340, 1146
BfaI CTAG 4 cut(s) 119, 756, 986, 1022
BfuAI ACCTGC 2 cut(s) 421, 882
BisI GCNGC 5 cut(s) 351, 354, 363, 573, 1144
BlsI GCNGC 5 cut(s) 352, 355, 364, 574, 1145
Bme1390I CCNGG 4 cut(s) 324, 706, 840, 861
Bme18I GGWCC 3 cut(s) 145, 1175, 1214
BmgBI CACGTC 1 cut(s) 1156
BmgT120I GGNCC 4 cut(s) 145, 1064, 1175, 1214
BmiI GGNNCC 1 cut(s) 648
BmrFI CCNGG 4 cut(s) 324, 706, 840, 861
BmsI GCATC 1 cut(s) 40
BpmI CTGGAG 1 cut(s) 960
BpuMI CCSGG 1 cut(s) 706
Bsa29I ATCGAT 1 cut(s) 1137
BsaJI CCNNGG 5 cut(s) 81, 372, 1093, 1144, 1171
BsaWI WCCGGW 1 cut(s) 566
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 1140, 1170
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 1298
Bse21I CCTNAGG 1 cut(s) 273
BseBI CCWGG 3 cut(s) 324, 840, 861
BseCI ATCGAT 1 cut(s) 1137
BseDI CCNNGG 5 cut(s) 81, 372, 1093, 1144, 1171
BseGI GGATG 3 cut(s) 532, 692, 1109
BseLI CCNNNNNNNGG 2 cut(s) 25, 1298
BseMII CTCAG 5 cut(s) 35, 264, 351, 740, 1091
BseRI GAGGAG 1 cut(s) 1164
BseXI GCAGC 4 cut(s) 340, 362, 374, 584
BseYI CCCAGC 1 cut(s) 917
Bsh1236I CGCG 2 cut(s) 1095, 1146
BshFI GGCC 4 cut(s) 9, 86, 271, 1066
BshVI ATCGAT 1 cut(s) 1137
BsiSI CCGG 2 cut(s) 567, 705
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 2 cut(s) 25, 1298
BsmAI GTCTC 3 cut(s) 51, 340, 1146
BsmBI CGTCTC 1 cut(s) 1146
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 700
BsnI GGCC 4 cut(s) 9, 86, 271, 1066
Bsp143I GATC 8 cut(s) 28, 140, 238, 422, 646, 742, 979, 1117
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 5 cut(s) 776, 1093, 1095, 1144, 1146
BspANI GGCC 4 cut(s) 9, 86, 271, 1066
BspCNI CTCAG 5 cut(s) 34, 265, 350, 739, 1090
BspDI ATCGAT 1 cut(s) 1137
BspFNI CGCG 2 cut(s) 1095, 1146
BspLI GGNNCC 1 cut(s) 648
BspMI ACCTGC 2 cut(s) 421, 882
BspPI GGATC 6 cut(s) 36, 148, 233, 641, 654, 737
BssECI CCNNGG 5 cut(s) 81, 372, 1093, 1144, 1171
BssMI GATC 8 cut(s) 28, 140, 238, 422, 646, 742, 979, 1117
BssT1I CCWWGG 3 cut(s) 81, 372, 1171
Bst2UI CCWGG 3 cut(s) 324, 840, 861
Bst4CI ACNGT 5 cut(s) 257, 476, 506, 625, 1071
BstC8I GCNNGC 2 cut(s) 116, 493
BstDEI CTNAG 5 cut(s) 21, 273, 337, 726, 1077
BstDSI CCRYGG 3 cut(s) 81, 1093, 1144
BstEII GGTNACC 1 cut(s) 248
BstF5I GGATG 3 cut(s) 532, 692, 1109
BstFNI CGCG 2 cut(s) 1095, 1146
BstKTI GATC 8 cut(s) 31, 143, 241, 425, 649, 745, 982, 1120
BstMAI GTCTC 3 cut(s) 51, 340, 1146
BstMBI GATC 8 cut(s) 28, 140, 238, 422, 646, 742, 979, 1117
BstMWI GCNNNNNNNGC 5 cut(s) 164, 347, 359, 362, 569
BstNI CCWGG 3 cut(s) 324, 840, 861
BstNSI RCATGY 3 cut(s) 158, 495, 1045
BstPI GGTNACC 1 cut(s) 248
BstSCI CCNGG 4 cut(s) 322, 704, 838, 859
BstUI CGCG 2 cut(s) 1095, 1146
BstV1I GCAGC 4 cut(s) 340, 362, 374, 584
BstX2I RGATCY 2 cut(s) 28, 646
BstYI RGATCY 2 cut(s) 28, 646
Bsu15I ATCGAT 1 cut(s) 1137
Bsu36I CCTNAGG 1 cut(s) 273
BsuRI GGCC 4 cut(s) 9, 86, 271, 1066
BsuTUI ATCGAT 1 cut(s) 1137
BtgI CCRYGG 3 cut(s) 81, 1093, 1144
BtrI CACGTC 1 cut(s) 1156
BtsCI GGATG 3 cut(s) 532, 692, 1109
BtsIMutI CAGTG 3 cut(s) 621, 675, 734
BveI ACCTGC 2 cut(s) 421, 882
Cac8I GCNNGC 2 cut(s) 116, 493
Cfr13I GGNCC 4 cut(s) 145, 1064, 1175, 1214
Cfr42I CCGCGG 2 cut(s) 1096, 1147
ClaI ATCGAT 1 cut(s) 1137
Csp6I GTAC 2 cut(s) 716, 922
CviAII CATG 8 cut(s) 82, 155, 280, 492, 523, 925, 1042, 1051
CviQI GTAC 2 cut(s) 716, 922
DdeI CTNAG 5 cut(s) 21, 273, 337, 726, 1077
DpnI GATC 8 cut(s) 30, 142, 240, 424, 648, 744, 981, 1119
DpnII GATC 8 cut(s) 28, 140, 238, 422, 646, 742, 979, 1117
DraI TTTAAA 1 cut(s) 1318
Eco130I CCWWGG 3 cut(s) 81, 372, 1171
Eco147I AGGCCT 2 cut(s) 9, 271
Eco47I GGWCC 3 cut(s) 145, 1175, 1214
Eco81I CCTNAGG 1 cut(s) 273
Eco91I GGTNACC 1 cut(s) 248
EcoO109I RGGNCCY 2 cut(s) 1175, 1214
EcoO65I GGTNACC 1 cut(s) 248
EcoRII CCWGG 3 cut(s) 322, 838, 859
EcoT14I CCWWGG 3 cut(s) 81, 372, 1171
ErhI CCWWGG 3 cut(s) 81, 372, 1171
Esp3I CGTCTC 1 cut(s) 1146
FaeI CATG 8 cut(s) 85, 158, 283, 495, 526, 928, 1045, 1054
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 283, 315
FaqI GGGAC 1 cut(s) 193
FatI CATG 8 cut(s) 81, 154, 279, 491, 522, 924, 1041, 1050
FbaI TGATCA 1 cut(s) 1117
Fnu4HI GCNGC 5 cut(s) 351, 354, 363, 573, 1144
FokI GGATG 3 cut(s) 539, 699, 1096
Fsp4HI GCNGC 5 cut(s) 351, 354, 363, 573, 1144
FspBI CTAG 4 cut(s) 119, 756, 986, 1022
GluI GCNGC 5 cut(s) 351, 354, 363, 573, 1144
GsaI CCCAGC 1 cut(s) 921
GsuI CTGGAG 1 cut(s) 960
HaeIII GGCC 4 cut(s) 9, 86, 271, 1066
HapII CCGG 2 cut(s) 567, 705
Hin1II CATG 8 cut(s) 85, 158, 283, 495, 526, 928, 1045, 1054
HinfI GANTC 7 cut(s) 215, 617, 692, 806, 1059, 1241, 1339
HpaII CCGG 2 cut(s) 567, 705
HphI GGTGA 6 cut(s) 260, 301, 801, 828, 988, 1082
Hpy166II GTNNAC 1 cut(s) 621
Hpy188III TCNNGA 3 cut(s) 212, 977, 1245
Hpy8I GTNNAC 1 cut(s) 621
HpyAV CCTTC 3 cut(s) 97, 158, 479
HpyCH4III ACNGT 5 cut(s) 257, 476, 506, 625, 1071
HpyCH4IV ACGT 4 cut(s) 207, 714, 1155, 1232
HpyCH4V TGCA 8 cut(s) 53, 350, 356, 362, 430, 446, 877, 1202
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 347, 359, 362, 569
HpyF3I CTNAG 5 cut(s) 21, 273, 337, 726, 1077
HpySE526I ACGT 4 cut(s) 207, 714, 1155, 1232
Hsp92II CATG 8 cut(s) 85, 158, 283, 495, 526, 928, 1045, 1054
Ksp22I TGATCA 1 cut(s) 1117
KspI CCGCGG 2 cut(s) 1096, 1147
Kzo9I GATC 8 cut(s) 28, 140, 238, 422, 646, 742, 979, 1117
LmnI GCTCC 5 cut(s) 111, 488, 542, 569, 1294
Lsp1109I GCAGC 4 cut(s) 340, 362, 374, 584
LweI GCATC 1 cut(s) 40
MaeI CTAG 4 cut(s) 119, 756, 986, 1022
MaeII ACGT 4 cut(s) 207, 714, 1155, 1232
MaeIII GTNAC 6 cut(s) 41, 248, 307, 673, 826, 869
MalI GATC 8 cut(s) 30, 142, 240, 424, 648, 744, 981, 1119
MboI GATC 8 cut(s) 28, 140, 238, 422, 646, 742, 979, 1117
MboII GAAGA 2 cut(s) 360, 893
MfeI CAATTG 1 cut(s) 1203
MflI RGATCY 2 cut(s) 28, 646
MlyI GAGTC 1 cut(s) 626
MmeI TCCRAC 1 cut(s) 1036
MnlI CCTC 9 cut(s) 30, 268, 307, 836, 857, 898, 1086, 1142, 1205
MseI TTAA 3 cut(s) 417, 711, 1317
MspA1I CMGCKG 4 cut(s) 353, 575, 1095, 1146
MspI CCGG 2 cut(s) 567, 705
MspR9I CCNGG 4 cut(s) 324, 706, 840, 861
MunI CAATTG 1 cut(s) 1203
Mva1269I GAATGC 1 cut(s) 700
MvaI CCWGG 3 cut(s) 324, 840, 861
MvnI CGCG 2 cut(s) 1095, 1146
MwoI GCNNNNNNNGC 5 cut(s) 164, 347, 359, 362, 569
NciI CCSGG 1 cut(s) 706
NcoI CCATGG 1 cut(s) 81
NdeII GATC 8 cut(s) 28, 140, 238, 422, 646, 742, 979, 1117
NlaIII CATG 8 cut(s) 85, 158, 283, 495, 526, 928, 1045, 1054
NlaIV GGNNCC 1 cut(s) 648
NmuCI GTSAC 4 cut(s) 248, 307, 673, 826
NspI RCATGY 3 cut(s) 158, 495, 1045
PaeI GCATGC 1 cut(s) 495
PceI AGGCCT 2 cut(s) 9, 271
PctI GAATGC 1 cut(s) 700
PfeI GAWTC 6 cut(s) 215, 692, 806, 1059, 1241, 1339
PfoI TCCNGGA 1 cut(s) 704
PkrI GCNGC 5 cut(s) 352, 355, 364, 574, 1145
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
PpuMI RGGWCCY 2 cut(s) 1175, 1214
Psp1406I AACGTT 1 cut(s) 207
Psp5II RGGWCCY 2 cut(s) 1175, 1214
Psp6I CCWGG 3 cut(s) 322, 838, 859
PspEI GGTNACC 1 cut(s) 248
PspFI CCCAGC 1 cut(s) 917
PspGI CCWGG 3 cut(s) 322, 838, 859
PspN4I GGNNCC 1 cut(s) 648
PspPI GGNCC 4 cut(s) 145, 1064, 1175, 1214
PspPPI RGGWCCY 2 cut(s) 1175, 1214
PsuI RGATCY 2 cut(s) 28, 646
PvuII CAGCTG 2 cut(s) 353, 575
RsaI GTAC 2 cut(s) 717, 923
RsaNI GTAC 2 cut(s) 716, 922
SacII CCGCGG 2 cut(s) 1096, 1147
SaqAI TTAA 3 cut(s) 417, 711, 1317
SatI GCNGC 5 cut(s) 351, 354, 363, 573, 1144
Sau3AI GATC 8 cut(s) 28, 140, 238, 422, 646, 742, 979, 1117
Sau96I GGNCC 4 cut(s) 145, 1064, 1175, 1214
SchI GAGTC 1 cut(s) 626
ScrFI CCNGG 4 cut(s) 324, 706, 840, 861
SfaNI GCATC 1 cut(s) 40
Sfr303I CCGCGG 2 cut(s) 1096, 1147
SgrBI CCGCGG 2 cut(s) 1096, 1147
SinI GGWCC 3 cut(s) 145, 1175, 1214
SphI GCATGC 1 cut(s) 495
SseBI AGGCCT 2 cut(s) 9, 271
SsiI CCGC 5 cut(s) 776, 1093, 1095, 1144, 1146
SspI AATATT 1 cut(s) 386
SspMI CTAG 4 cut(s) 119, 756, 986, 1022
StuI AGGCCT 2 cut(s) 9, 271
StyD4I CCNGG 4 cut(s) 322, 704, 838, 859
StyI CCWWGG 3 cut(s) 81, 372, 1171
TaaI ACNGT 5 cut(s) 257, 476, 506, 625, 1071
TaiI ACGT 4 cut(s) 210, 717, 1158, 1235
TaqI TCGA 3 cut(s) 794, 1137, 1246
TaqII GACCGA 1 cut(s) 814
TauI GCSGC 1 cut(s) 1146
TfiI GAWTC 6 cut(s) 215, 692, 806, 1059, 1241, 1339
Tru1I TTAA 3 cut(s) 417, 711, 1317
Tru9I TTAA 3 cut(s) 417, 711, 1317
TscAI CASTG 3 cut(s) 628, 682, 734
TseFI GTSAC 4 cut(s) 248, 307, 673, 826
TseI GCWGC 4 cut(s) 350, 353, 362, 572
Tsp45I GTSAC 4 cut(s) 248, 307, 673, 826
TspDTI ATGAA 3 cut(s) 543, 645, 941
TspRI CASTG 3 cut(s) 628, 682, 734
VpaK11BI GGWCC 3 cut(s) 145, 1175, 1214
XapI RAATTY 5 cut(s) 440, 634, 680, 991, 1186
XceI RCATGY 3 cut(s) 158, 495, 1045
XspI CTAG 4 cut(s) 119, 756, 986, 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.