RLG00000026726

Endoglucanase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
5342558 .. 5347102
4545 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026726

Sequence Viewer

Length: 1770 bp
ATGGACGATCCATCGGTGCTAGTTGTTGGTTGGCCGGCAGATTTTGTTGGATCTCCACGGGGGCCGACCAAGGACGGCGGAGATTGGGGGTTGATTTCGATGCGATCTTTTAGGGTCGCTAACATGGGTGTGGCTGCTCGTGAAGATTTGATCCAATGTGCTTCTGATAGTGGCTGGGACGGCATCGCACGGGGACACGGTGGTGGCAGCTTCTCGGCGGCGGTGCAAGCACTCAATGGTGGAGATCTTGTAGCGGCAGCGCGGGTTCACTGTGCTGGTGGCCTAAATCTGTCTGAAGGGATGCTCACAGCAGCAAGTTTGGCTTCGTCACACAACTACACTGATGCTTTGTCGAAGTGCATATTGTTTTTTGAAGGGCAGAGATCTGGAAACTTACCGCCTTCGCAAAGAATGACTTGGAGGAAAGATTCAGCCTTGAAGGATGGCTCTGATGTTGGTATGGATCTTGTAGGGGGTTACTATGATGCAGGTGACAATGTGAAGTTCAACTTTCCCATGGCCTTCACAACAACAATGTTGTCGTGGAGCGTGCTAGAGTTTGGAAATCTAATGGGATCGGACCTTCAACATGCTATGGAAGCTATAAGATGGGGGACTGATTATTTTCTGAAAGCCACAAACGTTCCTGATTCTGTTGTGGGTGTAGTTGGCGATCCTATTGGTGACCACAGTTGTTCTCAAAGGCCTGAGGACATGGACACCCCAAGAACCTCTTATGTAGTCACCAAAGAAAAGCCAGGTTCAGAAGTCTCAGCCGAAATTGCAGCTGCATTTGCAGCTTCTTCCGTGGTGTTCAAAGATTCAGACAATAACTACTCTACTTTGCTTCTTAACCGATCAATGCAGGTTTTTGAATTTGCAGATAAGTATAGGGGGTCTTACAATGACAGTATTGCGGAAGGAGCCTGCCCCTTTTACTGTGATTTTAGTGGCTACATGGATGAATTGCTCTGGGGAGCTTCTTGGCTATACAAGGCAACCGGAGCAGCTGATTATTGGAATTATGTGAGAGAGAACATAGACAAAATGGAGTCCACTGTAATAAGAAATTTCAATGGGGATCCTGTTTCATACATAAATGGTGCTGTCACTGAATTTGGATGGGATTCAAAGCATTCCGGGATTAACGTGCTTGTTTCTCAGTGGGTAATGACTGATCCGAACAATTCTAGTCCTTTTATTCTCAATGCGGATAAGTTTGTATGCTCGATTTTGCCAGAATCACCCACTCAAAAATCGGTCACATATTCACCAGGAGGGCTGTTGTTCAAACCAGGAGGAAGCAACCTGCAACATTCAACCTCAATATCATATCTTCTTATGGTTTATGCTGGATACATGAAAGCTGCGAACAAAGTCGTGAATTGTGGCAATAATGTGGTCATCACTCCAGATCGGCTAGCAAATTTCACCAAAGGACAGGTTGATTATATACTAGGAAGCAACCCATTAGGCATGTCATACATGGTCGGATTCGGGCCACAGTTCCCTCAGAAAATACATCACCGCGGTTCTGTTCTACCATGCCTTGATCAACACCCACAACACATCGATTGCCGCGGAGGAGACGTGTATTGGCAAAGCCAAGGTCCTAATCTGAACTTGCTAACAGGTGCAATTGTGGGAGGTCCTGCTGAAAATGATACATTCCAAGATTCTCGATATAATGTTCCACAATCAGAGCCAACTACATACATCAACGCTCCTTTTGTGGGAGTTTTGGCTTACTTTAAATCACTATTTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

590

Amino Acids

63.8

Weight (kDa)

4.96

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 113 - 581 3.4e-145 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000663)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 479
Acc36I ACCTGC 3 cut(s) 479, 856, 1317
AccII CGCG 3 cut(s) 262, 1530, 1581
AclI AACGTT 1 cut(s) 642
AclWI GGATC 9 cut(s) 2, 58, 145, 471, 583, 668, 1076, 1089, 1172
AcoI YGGCCR 1 cut(s) 32
AcsI RAATTY 4 cut(s) 875, 1069, 1115, 1426
AcuI CTGAAG 1 cut(s) 315
AfiI CCNNNNNNNGG 1 cut(s) 1733
AflIII ACRYGT 1 cut(s) 1590
AjiI CACGTC 1 cut(s) 1591
AjnI CCWGG 3 cut(s) 757, 1273, 1294
AleI CACNNNNGTG 1 cut(s) 201
AluBI AGCT 7 cut(s) 210, 602, 788, 800, 980, 1010, 1367
AluI AGCT 7 cut(s) 210, 602, 788, 800, 980, 1010, 1367
Alw26I GTCTC 2 cut(s) 775, 1581
AlwI GGATC 9 cut(s) 2, 58, 145, 471, 583, 668, 1076, 1089, 1172
AoxI GGCC 6 cut(s) 32, 62, 280, 519, 704, 1499
ApeKI GCWGC 9 cut(s) 134, 207, 257, 311, 785, 788, 797, 1007, 1367
ApoI RAATTY 4 cut(s) 875, 1069, 1115, 1426
ArsI GACNNNNNNTTYG 2 cut(s) 1594, 1626
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 5 cut(s) 62, 580, 1499, 1610, 1649
AsuC2I CCSGG 1 cut(s) 1141
AsuHPI GGTGA 7 cut(s) 503, 695, 736, 1236, 1263, 1423, 1517
AsuNHI GCTAGC 1 cut(s) 1420
AvaII GGWCC 3 cut(s) 580, 1610, 1649
AxyI CCTNAGG 1 cut(s) 708
BamHI GGATCC 1 cut(s) 1081
BauI CACGAG 1 cut(s) 138
BbvI GCAGC 9 cut(s) 121, 219, 269, 323, 775, 797, 809, 1019, 1354
BccI CCATC 4 cut(s) 19, 437, 603, 1116
BceAI ACGGC 2 cut(s) 91, 196
BciT130I CCWGG 3 cut(s) 759, 1275, 1296
BciVI GTATCC 1 cut(s) 1349
BclI TGATCA 1 cut(s) 1552
BcnI CCSGG 1 cut(s) 1141
BcoDI GTCTC 2 cut(s) 775, 1581
BfaI CTAG 5 cut(s) 20, 554, 1191, 1421, 1457
BfuAI ACCTGC 3 cut(s) 479, 856, 1317
BfuI GTATCC 1 cut(s) 1349
BglII AGATCT 2 cut(s) 244, 383
Bme1390I CCNGG 4 cut(s) 759, 1141, 1275, 1296
Bme18I GGWCC 3 cut(s) 580, 1610, 1649
BmgBI CACGTC 1 cut(s) 1591
BmgT120I GGNCC 5 cut(s) 62, 580, 1499, 1610, 1649
BmiI GGNNCC 3 cut(s) 63, 925, 1083
BmrFI CCNGG 4 cut(s) 759, 1141, 1275, 1296
BmsI GCATC 5 cut(s) 90, 192, 291, 334, 475
BmtI GCTAGC 1 cut(s) 1424
BpmI CTGGAG 1 cut(s) 1395
BpuMI CCSGG 1 cut(s) 1141
Bsa29I ATCGAT 1 cut(s) 1572
BsaJI CCNNGG 7 cut(s) 56, 69, 516, 807, 1528, 1579, 1606
BsaWI WCCGGW 1 cut(s) 1001
BsaXI ACNNNNNCTCC 4 cut(s) 234, 264, 1575, 1605
Bsc4I CCNNNNNNNGG 1 cut(s) 1733
Bse118I RCCGGY 1 cut(s) 34
Bse21I CCTNAGG 1 cut(s) 708
BseBI CCWGG 3 cut(s) 759, 1275, 1296
BseCI ATCGAT 1 cut(s) 1572
BseDI CCNNGG 7 cut(s) 56, 69, 516, 807, 1528, 1579, 1606
BseGI GGATG 4 cut(s) 306, 448, 967, 1127
BseLI CCNNNNNNNGG 1 cut(s) 1733
BseMII CTCAG 4 cut(s) 699, 786, 1175, 1526
BseRI GAGGAG 1 cut(s) 1599
BseXI GCAGC 9 cut(s) 121, 219, 269, 323, 775, 797, 809, 1019, 1354
BseYI CCCAGC 1 cut(s) 174
Bsh1236I CGCG 3 cut(s) 262, 1530, 1581
BshFI GGCC 6 cut(s) 34, 64, 282, 521, 706, 1501
BshVI ATCGAT 1 cut(s) 1572
BsiSI CCGG 3 cut(s) 35, 1002, 1140
BslFI GGGAC 3 cut(s) 191, 207, 628
BslI CCNNNNNNNGG 1 cut(s) 1733
BsmAI GTCTC 2 cut(s) 775, 1581
BsmBI CGTCTC 1 cut(s) 1581
BsmFI GGGAC 3 cut(s) 191, 207, 628
BsmI GAATGC 1 cut(s) 1135
BsnI GGCC 6 cut(s) 34, 64, 282, 521, 706, 1501
Bsp19I CCATGG 1 cut(s) 516
BspANI GGCC 6 cut(s) 34, 64, 282, 521, 706, 1501
BspCNI CTCAG 4 cut(s) 700, 785, 1174, 1525
BspDI ATCGAT 1 cut(s) 1572
BspFNI CGCG 3 cut(s) 262, 1530, 1581
BspLI GGNNCC 3 cut(s) 63, 925, 1083
BspMI ACCTGC 3 cut(s) 479, 856, 1317
BspOI GCTAGC 1 cut(s) 1424
BspPI GGATC 9 cut(s) 2, 58, 145, 471, 583, 668, 1076, 1089, 1172
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 7 cut(s) 56, 69, 516, 807, 1528, 1579, 1606
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 3 cut(s) 69, 516, 1606
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 3 cut(s) 759, 1275, 1296
Bst4CI ACNGT 7 cut(s) 200, 272, 692, 911, 941, 1060, 1506
BstC8I GCNNGC 5 cut(s) 36, 228, 551, 928, 1422
BstDEI CTNAG 4 cut(s) 708, 772, 1161, 1512
BstDSI CCRYGG 5 cut(s) 56, 516, 807, 1528, 1579
BstEII GGTNACC 1 cut(s) 683
BstF5I GGATG 4 cut(s) 306, 448, 967, 1127
BstFNI CGCG 3 cut(s) 262, 1530, 1581
BstHHI GCGC 1 cut(s) 262
BstMAI GTCTC 2 cut(s) 775, 1581
BstMWI GCNNNNNNNGC 9 cut(s) 180, 227, 320, 599, 782, 794, 797, 923, 1004
BstNI CCWGG 3 cut(s) 759, 1275, 1296
BstNSI RCATGY 2 cut(s) 593, 1480
BstPI GGTNACC 1 cut(s) 683
BstSCI CCNGG 4 cut(s) 757, 1139, 1273, 1294
BstUI CGCG 3 cut(s) 262, 1530, 1581
BstV1I GCAGC 9 cut(s) 121, 219, 269, 323, 775, 797, 809, 1019, 1354
BstX2I RGATCY 5 cut(s) 50, 244, 383, 463, 1081
BstYI RGATCY 5 cut(s) 50, 244, 383, 463, 1081
Bsu15I ATCGAT 1 cut(s) 1572
Bsu36I CCTNAGG 1 cut(s) 708
BsuI GTATCC 1 cut(s) 1349
BsuRI GGCC 6 cut(s) 34, 64, 282, 521, 706, 1501
BsuTUI ATCGAT 1 cut(s) 1572
BtgI CCRYGG 5 cut(s) 56, 516, 807, 1528, 1579
BtgZI GCGATG 1 cut(s) 169
BtrI CACGTC 1 cut(s) 1591
BtsCI GGATG 4 cut(s) 306, 448, 967, 1127
BtsIMutI CAGTG 5 cut(s) 268, 339, 1056, 1110, 1169
BveI ACCTGC 3 cut(s) 479, 856, 1317
Cac8I GCNNGC 5 cut(s) 36, 228, 551, 928, 1422
CfoI GCGC 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 5 cut(s) 62, 580, 1499, 1610, 1649
Cfr42I CCGCGG 2 cut(s) 1531, 1582
ClaI ATCGAT 1 cut(s) 1572
CviAII CATG 9 cut(s) 124, 517, 590, 715, 958, 1360, 1477, 1486, 1545
DdeI CTNAG 4 cut(s) 708, 772, 1161, 1512
DraI TTTAAA 1 cut(s) 1753
EaeI YGGCCR 1 cut(s) 32
EciI GGCGGA 1 cut(s) 93
Eco130I CCWWGG 3 cut(s) 69, 516, 1606
Eco147I AGGCCT 1 cut(s) 706
Eco47I GGWCC 3 cut(s) 580, 1610, 1649
Eco57I CTGAAG 1 cut(s) 315
Eco81I CCTNAGG 1 cut(s) 708
Eco91I GGTNACC 1 cut(s) 683
EcoO109I RGGNCCY 2 cut(s) 1610, 1649
EcoO65I GGTNACC 1 cut(s) 683
EcoRII CCWGG 3 cut(s) 757, 1273, 1294
EcoT14I CCWWGG 3 cut(s) 69, 516, 1606
ErhI CCWWGG 3 cut(s) 69, 516, 1606
Esp3I CGTCTC 1 cut(s) 1581
FaeI CATG 9 cut(s) 127, 520, 593, 718, 961, 1363, 1480, 1489, 1548
FalI AAGNNNNNCTT 8 cut(s) 307, 339, 400, 432, 494, 526, 718, 750
FaqI GGGAC 3 cut(s) 191, 207, 628
FatI CATG 9 cut(s) 123, 516, 589, 714, 957, 1359, 1476, 1485, 1544
FauI CCCGC 1 cut(s) 255
FbaI TGATCA 1 cut(s) 1552
FokI GGATG 4 cut(s) 313, 455, 974, 1134
FspBI CTAG 5 cut(s) 20, 554, 1191, 1421, 1457
GlaI GCGC 1 cut(s) 261
GsaI CCCAGC 1 cut(s) 178
GsuI CTGGAG 1 cut(s) 1395
HaeIII GGCC 6 cut(s) 34, 64, 282, 521, 706, 1501
HapII CCGG 3 cut(s) 35, 1002, 1140
HhaI GCGC 1 cut(s) 262
Hin1II CATG 9 cut(s) 127, 520, 593, 718, 961, 1363, 1480, 1489, 1548
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 8 cut(s) 428, 650, 821, 1052, 1127, 1241, 1494, 1676
HpaII CCGG 3 cut(s) 35, 1002, 1140
HphI GGTGA 7 cut(s) 503, 695, 736, 1236, 1263, 1423, 1517
Hpy166II GTNNAC 2 cut(s) 268, 1056
Hpy188III TCNNGA 6 cut(s) 140, 387, 647, 1381, 1412, 1680
Hpy8I GTNNAC 2 cut(s) 268, 1056
HpyAV CCTTC 7 cut(s) 290, 368, 411, 433, 532, 593, 914
HpyCH4III ACNGT 7 cut(s) 200, 272, 692, 911, 941, 1060, 1506
HpyCH4IV ACGT 3 cut(s) 642, 1149, 1590
HpyF10VI GCNNNNNNNGC 9 cut(s) 180, 227, 320, 599, 782, 794, 797, 923, 1004
HpyF3I CTNAG 4 cut(s) 708, 772, 1161, 1512
HpySE526I ACGT 3 cut(s) 642, 1149, 1590
Hsp92II CATG 9 cut(s) 127, 520, 593, 718, 961, 1363, 1480, 1489, 1548
HspAI GCGC 1 cut(s) 260
KroI GCCGGC 1 cut(s) 34
KroNI GCCGGC 1 cut(s) 36
Ksp22I TGATCA 1 cut(s) 1552
KspI CCGCGG 2 cut(s) 1531, 1582
LmnI GCTCC 5 cut(s) 546, 923, 977, 1004, 1729
Lsp1109I GCAGC 9 cut(s) 121, 219, 269, 323, 775, 797, 809, 1019, 1354
LweI GCATC 5 cut(s) 90, 192, 291, 334, 475
MaeI CTAG 5 cut(s) 20, 554, 1191, 1421, 1457
MaeII ACGT 3 cut(s) 642, 1149, 1590
MaeIII GTNAC 7 cut(s) 327, 476, 491, 683, 742, 1108, 1261
MboII GAAGA 3 cut(s) 155, 795, 1328
MfeI CAATTG 1 cut(s) 1638
MflI RGATCY 5 cut(s) 50, 244, 383, 463, 1081
MlyI GAGTC 1 cut(s) 1061
MmeI TCCRAC 2 cut(s) 28, 1471
MnlI CCTC 9 cut(s) 414, 703, 742, 1271, 1292, 1333, 1521, 1577, 1640
MroNI GCCGGC 1 cut(s) 34
MseI TTAA 3 cut(s) 852, 1146, 1752
MslI CAYNNNNRTG 2 cut(s) 128, 201
MspA1I CMGCKG 4 cut(s) 788, 1010, 1530, 1581
MspI CCGG 3 cut(s) 35, 1002, 1140
MspR9I CCNGG 4 cut(s) 759, 1141, 1275, 1296
MunI CAATTG 1 cut(s) 1638
Mva1269I GAATGC 1 cut(s) 1135
MvaI CCWGG 3 cut(s) 759, 1275, 1296
MvnI CGCG 3 cut(s) 262, 1530, 1581
MwoI GCNNNNNNNGC 9 cut(s) 180, 227, 320, 599, 782, 794, 797, 923, 1004
NaeI GCCGGC 1 cut(s) 36
NciI CCSGG 1 cut(s) 1141
NcoI CCATGG 1 cut(s) 516
NgoMIV GCCGGC 1 cut(s) 34
NheI GCTAGC 1 cut(s) 1420
NlaIII CATG 9 cut(s) 127, 520, 593, 718, 961, 1363, 1480, 1489, 1548
NlaIV GGNNCC 3 cut(s) 63, 925, 1083
NmeAIII GCCGAG 1 cut(s) 194
NmuCI GTSAC 6 cut(s) 327, 491, 683, 742, 1108, 1261
NspI RCATGY 2 cut(s) 593, 1480
OliI CACNNNNGTG 1 cut(s) 201
PaqCI CACCTGC 1 cut(s) 479
PceI AGGCCT 1 cut(s) 706
PctI GAATGC 1 cut(s) 1135
PdiI GCCGGC 1 cut(s) 36
PfeI GAWTC 7 cut(s) 428, 650, 821, 1127, 1241, 1494, 1676
PfoI TCCNGGA 1 cut(s) 1139
PleI GAGTC 1 cut(s) 1060
PpsI GAGTC 1 cut(s) 1060
PpuMI RGGWCCY 2 cut(s) 1610, 1649
Psp1406I AACGTT 1 cut(s) 642
Psp5II RGGWCCY 2 cut(s) 1610, 1649
Psp6I CCWGG 3 cut(s) 757, 1273, 1294
PspEI GGTNACC 1 cut(s) 683
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 3 cut(s) 757, 1273, 1294
PspN4I GGNNCC 3 cut(s) 63, 925, 1083
PspPI GGNCC 5 cut(s) 62, 580, 1499, 1610, 1649
PspPPI RGGWCCY 2 cut(s) 1610, 1649
PsuI RGATCY 5 cut(s) 50, 244, 383, 463, 1081
PvuII CAGCTG 2 cut(s) 788, 1010
RseI CAYNNNNRTG 2 cut(s) 128, 201
SacII CCGCGG 2 cut(s) 1531, 1582
SaqAI TTAA 3 cut(s) 852, 1146, 1752
Sau96I GGNCC 5 cut(s) 62, 580, 1499, 1610, 1649
SchI GAGTC 1 cut(s) 1061
ScrFI CCNGG 4 cut(s) 759, 1141, 1275, 1296
SfaNI GCATC 5 cut(s) 90, 192, 291, 334, 475
Sfr303I CCGCGG 2 cut(s) 1531, 1582
SgrBI CCGCGG 2 cut(s) 1531, 1582
SinI GGWCC 3 cut(s) 580, 1610, 1649
SmiMI CAYNNNNRTG 2 cut(s) 128, 201
SseBI AGGCCT 1 cut(s) 706
SspMI CTAG 5 cut(s) 20, 554, 1191, 1421, 1457
StuI AGGCCT 1 cut(s) 706
StyD4I CCNGG 4 cut(s) 757, 1139, 1273, 1294
StyI CCWWGG 3 cut(s) 69, 516, 1606
TaaI ACNGT 7 cut(s) 200, 272, 692, 911, 941, 1060, 1506
TaiI ACGT 3 cut(s) 645, 1152, 1593
TaqI TCGA 5 cut(s) 98, 353, 1229, 1572, 1681
TaqII GACCGA 1 cut(s) 1249
TauI GCSGC 3 cut(s) 221, 257, 1581
TfiI GAWTC 7 cut(s) 428, 650, 821, 1127, 1241, 1494, 1676
Tru1I TTAA 3 cut(s) 852, 1146, 1752
Tru9I TTAA 3 cut(s) 852, 1146, 1752
TscAI CASTG 5 cut(s) 275, 346, 1063, 1117, 1169
TseFI GTSAC 6 cut(s) 327, 491, 683, 742, 1108, 1261
TseI GCWGC 9 cut(s) 134, 207, 257, 311, 785, 788, 797, 1007, 1367
Tsp45I GTSAC 6 cut(s) 327, 491, 683, 742, 1108, 1261
TspDTI ATGAA 3 cut(s) 978, 1080, 1376
TspGWI ACGGA 1 cut(s) 796
TspRI CASTG 5 cut(s) 275, 346, 1063, 1117, 1169
VpaK11BI GGWCC 3 cut(s) 580, 1610, 1649
XapI RAATTY 4 cut(s) 875, 1069, 1115, 1426
XceI RCATGY 2 cut(s) 593, 1480
XspI CTAG 5 cut(s) 20, 554, 1191, 1421, 1457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.