Rmu_ssc0000408.1_g000014

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000408.1
OG0000663
Physical Location & Seq
Reverse (-)
63869 .. 64931
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000408.1_g000014.1.cds

Sequence Viewer

Length: 702 bp
atgagctacagcatggaaccaaaatggttttggaagtttagcagcagacatcaaagtaatgcaagtttcaacaatgtgcctgttctttctctcagcaaccccattttgttgaggggacatgctgctcttgattgccatcacaggagtaactttgcatatcaaggagctgaaccgccatccacactcactgcaatgacagctaactctgggagtcctggtgcaagaatctctccattcccagcttcaattaaagttgttgatactagcagtactagcaatgtctgccacgccttcccacaactacgcggatcgatatacgctttgtccaagggtattttgtttttcgaagggcagaggtcgggatcgttaccgagtacccaacgagtgacttggaggaaagattcagctctccattatggcaatgacgttcatatggatctggtagggggttactatgatgctggagacaacgtgaagttcaactttcccatggcattcacaacaacaatgttgtcttggagtgttctagagtttggtgaatcaatgggctcagaacttccatatgcttcggaagctataagatggggcactgattacttgcttaaatccacagatgcttctggttctgttgccggctttgttggcgaccccgtaggcgaccacacttgttgggaaagacccgaagatatggacactccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

233

Amino Acids

25.54

Weight (kDa)

5.86

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23210 AT1G70710
fragaria_vesca FvH4_4g33940 FvH4_6g41450 FvH4_7g27772 FvH4_7g27773 FvH4_7g27774 FvH4_7g27775
malus_domestica MD00G1036700.v1.1 MD07G1097500.v1.1 MD11G1195000.v1.1 MD16G1021500.v1.1
prunus_persica Prupe.1G331000_v2.0.a1 Prupe.1G331000_v2.0.a1 Prupe.2G121700_v2.0.a1 Prupe.2G278700_v2.0.a1 Prupe.2G278800_v2.0.a1
pyrus_communis pycom01g19480 pycom03g11560 pycom06g08760 pycom16g01920
rosa_chinensis RchiOBHm_Chr1g0374571 RchiOBHm_Chr1g0374581 RchiOBHm_Chr1g0374591 RchiOBHm_Chr1g0374601 RchiOBHm_Chr1g0374611 RchiOBHm_Chr2g0157011 RchiOBHm_Chr4g0443471
rosa_laevigata RLG00000005926 RLG00000026724 RLG00000026725 RLG00000026726 RLG00000026727
rosa_multiflora Rmu_co8114132.1_g000001 Rmu_sc0004947.1_g000005 Rmu_sc0004947.1_g000006 Rmu_sc0004947.1_g000007 Rmu_sc0004947.1_g000008 Rmu_sc0009670.1_g000003 Rmu_sc0034696.1_g000001 Rmu_sc0037664.1_g000001 Rmu_ssc0000408.1_g000014
rosa_roxburghii Rroxscaffold_4G00283360 Rroxscaffold_4G00283370 Rroxscaffold_4G00283380 Rroxscaffold_5G00384020
rosa_rugosa Rorug01G0059600 Rorug01G0384100 Rorug01G0384200 Rorug01G0384200 Rorug02G0457500 Rorug04G0346500 Rorug04G0346500 Rorug07G0215300
rosa_samantha Rh1AG395000 Rh1AG395100 Rh1AG395200 Rh1AG395400 Rh1CG372800 Rh1CG372900 Rh1CG373000 Rh1CG373100 Rh1DG390300 Rh1DG390400 Rh1DG390500 Rh1DG390600 Rh2BG536600 Rh2DG545500 Rh4AG402000 Rh4CG429100 Rh4DG409100
rosa_wichuraiana Rw1G035030 Rw1G035040 Rw1G035050 Rw1G035060 Rw4G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 306
AciI CCGC 2 cut(s) 173, 306
AclWI GGATC 3 cut(s) 316, 370, 444
AfaI GTAC 2 cut(s) 271, 376
AgsI TTSAA 3 cut(s) 70, 246, 481
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 6 cut(s) 6, 167, 200, 242, 407, 575
AluI AGCT 6 cut(s) 6, 167, 200, 242, 407, 575
Alw26I GTCTC 1 cut(s) 459
AlwI GGATC 3 cut(s) 316, 370, 444
ApeKI GCWGC 2 cut(s) 42, 122
AsuHPI GGTGA 1 cut(s) 548
AsuII TTCGAA 1 cut(s) 345
BaeGI GKGCMC 1 cut(s) 590
BanII GRGCYC 1 cut(s) 551
BbvI GCAGC 2 cut(s) 54, 109
BccI CCATC 3 cut(s) 144, 184, 576
BciT130I CCWGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 459
BfaI CTAG 3 cut(s) 264, 273, 527
BfmI CTRYAG 1 cut(s) 7
BisI GCNGC 2 cut(s) 43, 123
BlsI GCNGC 2 cut(s) 44, 124
BmcAI AGTACT 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 2 cut(s) 448, 604
BpmI CTGGAG 1 cut(s) 483
Bpu14I TTCGAA 1 cut(s) 345
Bsa29I ATCGAT 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 327, 489
BsaXI ACNNNNNCTCC 4 cut(s) 202, 232, 456, 486
Bse118I RCCGGY 1 cut(s) 632
Bse3DI GCAATG 3 cut(s) 198, 283, 427
Bse8I GATNNNNATC 1 cut(s) 135
BseBI CCWGG 1 cut(s) 216
BseCI ATCGAT 1 cut(s) 311
BseDI CCNNGG 2 cut(s) 327, 489
BseGI GGATG 1 cut(s) 176
BseJI GATNNNNATC 1 cut(s) 135
BseMI GCAATG 3 cut(s) 198, 283, 427
BseMII CTCAG 2 cut(s) 106, 564
BseSI GKGCMC 1 cut(s) 590
BseXI GCAGC 2 cut(s) 54, 109
BseYI CCCAGC 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 306
BshVI ATCGAT 1 cut(s) 311
BsiSI CCGG 1 cut(s) 633
BslFI GGGAC 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 459
BsmFI GGGAC 1 cut(s) 129
BsmI GAATGC 1 cut(s) 494
Bsp119I TTCGAA 1 cut(s) 345
Bsp1286I GDGCHC 2 cut(s) 551, 590
Bsp143I GATC 3 cut(s) 308, 362, 436
Bsp19I CCATGG 1 cut(s) 489
BspACI CCGC 2 cut(s) 173, 306
BspCNI CTCAG 2 cut(s) 105, 563
BspDI ATCGAT 1 cut(s) 311
BspFNI CGCG 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 18
BspPI GGATC 3 cut(s) 316, 370, 444
BspT104I TTCGAA 1 cut(s) 345
BsrDI GCAATG 3 cut(s) 198, 283, 427
BsrFI RCCGGY 1 cut(s) 632
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 2 cut(s) 327, 489
BssMI GATC 3 cut(s) 308, 362, 436
BssT1I CCWWGG 2 cut(s) 327, 489
Bst2UI CCWGG 1 cut(s) 216
BstAPI GCANNNNNTGC 1 cut(s) 282
BstBI TTCGAA 1 cut(s) 345
BstC8I GCNNGC 1 cut(s) 634
BstDEI CTNAG 2 cut(s) 92, 550
BstDSI CCRYGG 1 cut(s) 489
BstF5I GGATG 1 cut(s) 176
BstFNI CGCG 1 cut(s) 306
BstKTI GATC 3 cut(s) 311, 365, 439
BstMAI GTCTC 1 cut(s) 459
BstMBI GATC 3 cut(s) 308, 362, 436
BstMWI GCNNNNNNNGC 5 cut(s) 197, 273, 282, 572, 642
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 7
BstSLI GKGCMC 1 cut(s) 590
BstUI CGCG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 54, 109
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
Bsu15I ATCGAT 1 cut(s) 311
BsuTUI ATCGAT 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 489
BtsCI GGATG 1 cut(s) 176
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 2 cut(s) 186, 588
Cac8I GCNNGC 1 cut(s) 634
Cfr10I RCCGGY 1 cut(s) 632
ClaI ATCGAT 1 cut(s) 311
Csp6I GTAC 2 cut(s) 270, 375
CspCI CAANNNNNGTGG 2 cut(s) 650, 685
CviAII CATG 3 cut(s) 13, 119, 490
CviJI RGCY 8 cut(s) 6, 167, 200, 242, 407, 549, 575, 636
CviKI_1 RGCY 8 cut(s) 6, 167, 200, 242, 407, 549, 575, 636
CviQI GTAC 2 cut(s) 270, 375
DdeI CTNAG 2 cut(s) 92, 550
DpnI GATC 3 cut(s) 310, 364, 438
DpnII GATC 3 cut(s) 308, 362, 436
Eco130I CCWWGG 2 cut(s) 327, 489
Eco24I GRGCYC 1 cut(s) 551
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 327, 489
EcoT38I GRGCYC 1 cut(s) 551
ErhI CCWWGG 2 cut(s) 327, 489
FaeI CATG 3 cut(s) 16, 122, 493
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FaqI GGGAC 1 cut(s) 129
FatI CATG 3 cut(s) 12, 118, 489
FauNDI CATATG 2 cut(s) 432, 562
Fnu4HI GCNGC 2 cut(s) 43, 123
FokI GGATG 1 cut(s) 163
FriOI GRGCYC 1 cut(s) 551
Fsp4HI GCNGC 2 cut(s) 43, 123
FspBI CTAG 3 cut(s) 264, 273, 527
GluI GCNGC 2 cut(s) 43, 123
GsaI CCCAGC 1 cut(s) 242
GsuI CTGGAG 1 cut(s) 483
HapII CCGG 1 cut(s) 633
Hin1II CATG 3 cut(s) 16, 122, 493
HinfI GANTC 4 cut(s) 211, 225, 401, 539
HpaII CCGG 1 cut(s) 633
HphI GGTGA 1 cut(s) 548
Hpy188I TCNGA 2 cut(s) 553, 571
Hpy188III TCNNGA 3 cut(s) 128, 360, 527
HpyAV CCTTC 2 cut(s) 301, 341
HpyCH4IV ACGT 2 cut(s) 426, 471
HpyCH4V TGCA 4 cut(s) 62, 155, 191, 221
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 273, 282, 572, 642
HpyF3I CTNAG 2 cut(s) 92, 550
HpySE526I ACGT 2 cut(s) 426, 471
Hsp92II CATG 3 cut(s) 16, 122, 493
KroI GCCGGC 1 cut(s) 632
KroNI GCCGGC 1 cut(s) 634
Kzo9I GATC 3 cut(s) 308, 362, 436
LmnI GCTCC 1 cut(s) 164
Lsp1109I GCAGC 2 cut(s) 54, 109
LweI GCATC 2 cut(s) 448, 604
MaeI CTAG 3 cut(s) 264, 273, 527
MaeII ACGT 2 cut(s) 426, 471
MaeIII GTNAC 4 cut(s) 146, 366, 385, 449
MalI GATC 3 cut(s) 310, 364, 438
MboI GATC 3 cut(s) 308, 362, 436
MboII GAAGA 1 cut(s) 695
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 2 cut(s) 551, 590
MluCI AATT 1 cut(s) 246
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 3 cut(s) 105, 348, 387
MroNI GCCGGC 1 cut(s) 632
MseI TTAA 2 cut(s) 249, 603
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 1 cut(s) 633
MspR9I CCNGG 1 cut(s) 216
Mva1269I GAATGC 1 cut(s) 494
MvaI CCWGG 1 cut(s) 216
MvnI CGCG 1 cut(s) 306
MwoI GCNNNNNNNGC 5 cut(s) 197, 273, 282, 572, 642
NaeI GCCGGC 1 cut(s) 634
NcoI CCATGG 1 cut(s) 489
NdeI CATATG 2 cut(s) 432, 562
NdeII GATC 3 cut(s) 308, 362, 436
NgoMIV GCCGGC 1 cut(s) 632
NlaIII CATG 3 cut(s) 16, 122, 493
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 385
NspI RCATGY 1 cut(s) 122
NspV TTCGAA 1 cut(s) 345
PctI GAATGC 1 cut(s) 494
PdiI GCCGGC 1 cut(s) 634
PfeI GAWTC 3 cut(s) 225, 401, 539
PkrI GCNGC 2 cut(s) 44, 124
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 214
PspFI CCCAGC 1 cut(s) 238
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 2 cut(s) 271, 376
RsaNI GTAC 2 cut(s) 270, 375
RseI CAYNNNNRTG 1 cut(s) 191
SaqAI TTAA 2 cut(s) 249, 603
SatI GCNGC 2 cut(s) 43, 123
Sau3AI GATC 3 cut(s) 308, 362, 436
ScaI AGTACT 1 cut(s) 271
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 2 cut(s) 551, 590
SetI ASST 9 cut(s) 8, 169, 202, 244, 359, 409, 429, 474, 577
SfaNI GCATC 2 cut(s) 448, 604
SfcI CTRYAG 1 cut(s) 7
SfuI TTCGAA 1 cut(s) 345
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 1 cut(s) 246
SsiI CCGC 2 cut(s) 173, 306
SspMI CTAG 3 cut(s) 264, 273, 527
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 2 cut(s) 327, 489
TaiI ACGT 2 cut(s) 429, 474
TaqI TCGA 2 cut(s) 311, 345
TasI AATT 1 cut(s) 246
TatI WGTACW 1 cut(s) 269
TfiI GAWTC 3 cut(s) 225, 401, 539
Tru1I TTAA 2 cut(s) 249, 603
Tru9I TTAA 2 cut(s) 249, 603
TscAI CASTG 2 cut(s) 193, 595
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 2 cut(s) 42, 122
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 1 cut(s) 419
TspRI CASTG 2 cut(s) 193, 595
XbaI TCTAGA 1 cut(s) 526
XceI RCATGY 1 cut(s) 122
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XspI CTAG 3 cut(s) 264, 273, 527
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.