RchiOBHm_Chr1g0374611

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000663
Physical Location & Seq
Forward (+)
62377392 .. 62379270
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59841

Sequence Viewer

Length: 735 bp
ATGGACACTCCTCGAACATCTTACATAGTAACCACACAAAAGCCAAGTTCTAAAGTTTCAACAGAGACTGCAGCCGCATTTGCAGCTTCTTCCATAGTGTTTAGTGGTTCTGACAAAGGATATTCTACCTTGCTTCTTACCCGAGCAAGACAGGTGTTTGAATTTGCTGATAAATATAGGCGTTCTTACAATGACAGTATTGGGAGTGGAGCATGCCCATTTTACTGTGACTTTAATGGCTACAAGGTAAAATATTTATTCAATCAGCTGACCTCAACTTGTGTTTCCAACTTTGCTAATCAATTTGCCTTACAGGATGAATTGATTTGGGGAGCAGCATGGTTATACAAGGCAACAAGGAATCCTATTTATTGGAACTATGTAAAACAGAACACAGATGCCATGAATTTGGAGTCCAATGTAGTCCTAAGAAATGTGGAAGGCCAAGCAGTTGTATACAATGGCGGAGATGTTACCGAATTTGGATGGGATGCAAAGCCTGCTGGCATTAACATCCTTGTTTCTCAACTAAATACTTGTTTCTCTTTCATAATGAGGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGAAGGAGAAGGAACTGAAAGCCTGGATGAACCGGCCCGTTTTGTGCCGGTCCCTATTCTCTGCATCTGCAAGTCCGGCCTGAAGTACCTCTGCCGGTCCCGGTCCCGGTCCCGGCCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

244

Amino Acids

27.46

Weight (kDa)

4.87

Isoelectric Point (pI)

54.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 1 - 180 9.8e-34 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23210 AT1G70710
fragaria_vesca FvH4_4g33940 FvH4_6g41450 FvH4_7g27772 FvH4_7g27773 FvH4_7g27774 FvH4_7g27775
malus_domestica MD00G1036700.v1.1 MD07G1097500.v1.1 MD11G1195000.v1.1 MD16G1021500.v1.1
prunus_persica Prupe.1G331000_v2.0.a1 Prupe.1G331000_v2.0.a1 Prupe.2G121700_v2.0.a1 Prupe.2G278700_v2.0.a1 Prupe.2G278800_v2.0.a1
pyrus_communis pycom01g19480 pycom03g11560 pycom06g08760 pycom16g01920
rosa_chinensis RchiOBHm_Chr1g0374571 RchiOBHm_Chr1g0374581 RchiOBHm_Chr1g0374591 RchiOBHm_Chr1g0374601 RchiOBHm_Chr1g0374611 RchiOBHm_Chr2g0157011 RchiOBHm_Chr4g0443471
rosa_laevigata RLG00000005926 RLG00000026724 RLG00000026725 RLG00000026726 RLG00000026727
rosa_multiflora Rmu_co8114132.1_g000001 Rmu_sc0004947.1_g000005 Rmu_sc0004947.1_g000006 Rmu_sc0004947.1_g000007 Rmu_sc0004947.1_g000008 Rmu_sc0009670.1_g000003 Rmu_sc0034696.1_g000001 Rmu_sc0037664.1_g000001 Rmu_ssc0000408.1_g000014
rosa_roxburghii Rroxscaffold_4G00283360 Rroxscaffold_4G00283370 Rroxscaffold_4G00283380 Rroxscaffold_5G00384020
rosa_rugosa Rorug01G0059600 Rorug01G0384100 Rorug01G0384200 Rorug01G0384200 Rorug02G0457500 Rorug04G0346500 Rorug04G0346500 Rorug07G0215300
rosa_samantha Rh1AG395000 Rh1AG395100 Rh1AG395200 Rh1AG395400 Rh1CG372800 Rh1CG372900 Rh1CG373000 Rh1CG373100 Rh1DG390300 Rh1DG390400 Rh1DG390500 Rh1DG390600 Rh2BG536600 Rh2DG545500 Rh4AG402000 Rh4CG429100 Rh4DG409100
rosa_wichuraiana Rw1G035030 Rw1G035040 Rw1G035050 Rw1G035060 Rw4G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 456
AciI CCGC 2 cut(s) 75, 465
AcsI RAATTY 3 cut(s) 161, 406, 479
AcuI CTGAAG 1 cut(s) 713
AfaI GTAC 1 cut(s) 698
AfiI CCNNNNNNNGG 2 cut(s) 717, 723
AgsI TTSAA 3 cut(s) 60, 161, 262
AjnI CCWGG 1 cut(s) 633
AluBI AGCT 2 cut(s) 86, 268
AluI AGCT 2 cut(s) 86, 268
Alw26I GTCTC 1 cut(s) 59
AlwNI CAGNNNCTG 1 cut(s) 68
Ama87I CYCGRG 1 cut(s) 141
AoxI GGCC 4 cut(s) 442, 645, 688, 725
ApeKI GCWGC 3 cut(s) 71, 83, 335
ApoI RAATTY 3 cut(s) 161, 406, 479
AspS9I GGNCC 6 cut(s) 646, 661, 708, 714, 720, 726
AsuC2I CCSGG 3 cut(s) 712, 718, 724
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 4 cut(s) 661, 708, 714, 720
BbvI GCAGC 3 cut(s) 83, 95, 347
BccI CCATC 1 cut(s) 480
BciT130I CCWGG 1 cut(s) 635
BcnI CCSGG 3 cut(s) 712, 718, 724
BcoDI GTCTC 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 69
BisI GCNGC 4 cut(s) 72, 75, 84, 336
BlsI GCNGC 4 cut(s) 73, 76, 85, 337
Bme1390I CCNGG 4 cut(s) 635, 712, 718, 724
Bme18I GGWCC 4 cut(s) 661, 708, 714, 720
BmeT110I CYCGRG 1 cut(s) 141
BmgT120I GGNCC 6 cut(s) 646, 661, 708, 714, 720, 726
BmiI GGNNCC 5 cut(s) 663, 710, 716, 722, 728
BmrFI CCNGG 4 cut(s) 635, 712, 718, 724
BmsI GCATC 3 cut(s) 388, 481, 684
BpuMI CCSGG 3 cut(s) 712, 718, 724
Bsc4I CCNNNNNNNGG 2 cut(s) 717, 723
Bse118I RCCGGY 3 cut(s) 643, 658, 705
BseBI CCWGG 1 cut(s) 635
BseGI GGATG 5 cut(s) 322, 491, 496, 513, 643
BseLI CCNNNNNNNGG 2 cut(s) 717, 723
BseRI GAGGAG 1 cut(s) 624
BseXI GCAGC 3 cut(s) 83, 95, 347
BshFI GGCC 4 cut(s) 444, 647, 690, 727
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 7 cut(s) 644, 659, 687, 706, 712, 718, 724
BslFI GGGAC 4 cut(s) 647, 694, 700, 706
BslI CCNNNNNNNGG 2 cut(s) 717, 723
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 4 cut(s) 647, 694, 700, 706
BsnI GGCC 4 cut(s) 444, 647, 690, 727
BsoBI CYCGRG 1 cut(s) 141
BspACI CCGC 2 cut(s) 75, 465
BspANI GGCC 4 cut(s) 444, 647, 690, 727
BspLI GGNNCC 5 cut(s) 663, 710, 716, 722, 728
BspMAI CTGCAG 1 cut(s) 73
BsrFI RCCGGY 3 cut(s) 643, 658, 705
BssAI RCCGGY 3 cut(s) 643, 658, 705
BssNAI GTATAC 1 cut(s) 457
Bst1107I GTATAC 1 cut(s) 457
Bst2UI CCWGG 1 cut(s) 635
Bst4CI ACNGT 2 cut(s) 197, 227
BstAPI GCANNNNNTGC 1 cut(s) 500
BstC8I GCNNGC 3 cut(s) 214, 501, 505
BstDEI CTNAG 1 cut(s) 428
BstF5I GGATG 5 cut(s) 322, 491, 496, 513, 643
BstMAI GTCTC 1 cut(s) 59
BstMWI GCNNNNNNNGC 4 cut(s) 80, 83, 500, 687
BstNI CCWGG 1 cut(s) 635
BstNSI RCATGY 1 cut(s) 216
BstSCI CCNGG 4 cut(s) 633, 710, 716, 722
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 3 cut(s) 83, 95, 347
BstXI CCANNNNNNTGG 1 cut(s) 409
BstZ17I GTATAC 1 cut(s) 457
BsuRI GGCC 4 cut(s) 444, 647, 690, 727
BtsCI GGATG 5 cut(s) 322, 491, 496, 513, 643
Cac8I GCNNGC 3 cut(s) 214, 501, 505
CaiI CAGNNNCTG 1 cut(s) 68
Cfr10I RCCGGY 3 cut(s) 643, 658, 705
Cfr13I GGNCC 6 cut(s) 646, 661, 708, 714, 720, 726
Csp6I GTAC 1 cut(s) 697
CviAII CATG 3 cut(s) 213, 339, 403
CviQI GTAC 1 cut(s) 697
DdeI CTNAG 1 cut(s) 428
EciI GGCGGA 1 cut(s) 480
Eco47I GGWCC 4 cut(s) 661, 708, 714, 720
Eco57I CTGAAG 1 cut(s) 713
Eco88I CYCGRG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 633
FaeI CATG 3 cut(s) 216, 342, 406
FaqI GGGAC 4 cut(s) 647, 694, 700, 706
FatI CATG 3 cut(s) 212, 338, 402
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 4 cut(s) 72, 75, 84, 336
FokI GGATG 5 cut(s) 329, 498, 500, 503, 650
Fsp4HI GCNGC 4 cut(s) 72, 75, 84, 336
GluI GCNGC 4 cut(s) 72, 75, 84, 336
HaeIII GGCC 4 cut(s) 444, 647, 690, 727
HapII CCGG 7 cut(s) 644, 659, 687, 706, 712, 718, 724
Hin1II CATG 3 cut(s) 216, 342, 406
HinfI GANTC 2 cut(s) 361, 413
HpaII CCGG 7 cut(s) 644, 659, 687, 706, 712, 718, 724
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 457
HpyAV CCTTC 4 cut(s) 434, 599, 608, 614
HpyCH4III ACNGT 2 cut(s) 197, 227
HpyCH4V TGCA 5 cut(s) 71, 83, 494, 675, 681
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 83, 500, 687
HpyF3I CTNAG 1 cut(s) 428
Hsp92II CATG 3 cut(s) 216, 342, 406
LmnI GCTCC 2 cut(s) 209, 332
Lsp1109I GCAGC 3 cut(s) 83, 95, 347
LweI GCATC 3 cut(s) 388, 481, 684
MaeIII GTNAC 3 cut(s) 28, 227, 472
MluCI AATT 5 cut(s) 161, 302, 320, 406, 479
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 5 cut(s) 21, 283, 549, 602, 710
MseI TTAA 2 cut(s) 234, 510
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 7 cut(s) 644, 659, 687, 706, 712, 718, 724
MspR9I CCNGG 4 cut(s) 635, 712, 718, 724
MvaI CCWGG 1 cut(s) 635
MwoI GCNNNNNNNGC 4 cut(s) 80, 83, 500, 687
NciI CCSGG 3 cut(s) 712, 718, 724
NlaIII CATG 3 cut(s) 216, 342, 406
NlaIV GGNNCC 5 cut(s) 663, 710, 716, 722, 728
NmuCI GTSAC 1 cut(s) 227
NspI RCATGY 1 cut(s) 216
PaeI GCATGC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 361
PkrI GCNGC 4 cut(s) 73, 76, 85, 337
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
Psp6I CCWGG 1 cut(s) 633
PspGI CCWGG 1 cut(s) 633
PspN4I GGNNCC 5 cut(s) 663, 710, 716, 722, 728
PspPI GGNCC 6 cut(s) 646, 661, 708, 714, 720, 726
PstI CTGCAG 1 cut(s) 73
PstNI CAGNNNCTG 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 1 cut(s) 698
RsaNI GTAC 1 cut(s) 697
SaqAI TTAA 2 cut(s) 234, 510
SatI GCNGC 4 cut(s) 72, 75, 84, 336
Sau96I GGNCC 6 cut(s) 646, 661, 708, 714, 720, 726
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 4 cut(s) 635, 712, 718, 724
SetI ASST 7 cut(s) 88, 131, 156, 249, 270, 275, 702
SfaNI GCATC 3 cut(s) 388, 481, 684
SfcI CTRYAG 1 cut(s) 69
SinI GGWCC 4 cut(s) 661, 708, 714, 720
SphI GCATGC 1 cut(s) 216
Sse9I AATT 5 cut(s) 161, 302, 320, 406, 479
SsiI CCGC 2 cut(s) 75, 465
SspI AATATT 1 cut(s) 254
StyD4I CCNGG 4 cut(s) 633, 710, 716, 722
TaaI ACNGT 2 cut(s) 197, 227
TaqI TCGA 1 cut(s) 13
TasI AATT 5 cut(s) 161, 302, 320, 406, 479
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 2 cut(s) 234, 510
Tru9I TTAA 2 cut(s) 234, 510
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 3 cut(s) 71, 83, 335
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 4 cut(s) 333, 419, 538, 654
VpaK11BI GGWCC 4 cut(s) 661, 708, 714, 720
XapI RAATTY 3 cut(s) 161, 406, 479
XceI RCATGY 1 cut(s) 216
XmiI GTMKAC 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.