Rroxscaffold_5G00384020

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000663
Physical Location & Seq
Reverse (-)
63551995 .. 63555592
3598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384020.1

Sequence Viewer

Length: 1494 bp
ATGGCGCGAAATGGCCTTTGCTTCCCGGGAAATGTTCCCGCATTTCGCGCAGCACTAGTCCTGTCGCTGCTCCTCCTGCTTCTCCACCCAACCAGCGCCGGCCACGACTACCACGACGCCCTCCGCAAGAGCATCCTCTTCTTCGAAGGCCAGCGCTCCGGCAAGCTCCCACCTGATCAGCGCCTCAAATGGCGCCGCGACTCCGCATTGCACGACGGCTCCACCGCCGGCGTAGACTTATCCGGCGGTTACTACGACGCCGGCGACAACGTCAAGTTCGGCTTTCCAATGGCGTTCACGACGACTTTGCTGGCGTGGAGCATTATAGACTTCGGGAGGATCATGGGGTCGGAGCAGAGGAACGCCGTCAAGTCCTTACGTTGGGGAACCGACTACCTCCTGAAGGCGACGGCGGTTCCCGGGGTTGTCTTCGTCCAGGTCGGCGACCCCTACTCCGACCACAACTGCTGGGAGAGGCCGGAAGACATGGACACGCGTCGCACTGTGTACAAAATCGACCGGAACAACCCGGGATCCGACGTGGCAGGCGAAACCGCCGCTGCGCTCGCCGCTGCCTCCATCGTGTTCAGGTCACGTGACCCCGCTTACTCGAGACTGCTTCTCAATCGAGCCGTTAGGGTTTTCGAGTTCGCTGACACCCATCGTGGTGCGTACAGCTCCAGCCTCAGAAACGCCGTGTGCCCTTTTTACTGCGACGTGAACGGCTTCCAGGATGAGTTACTGTGGGGAGCAGCGTGGTTGCACAAGGCATCAAGAAGGCGCCATTACAGAGAATACATAGTGAGAAACGAGGTCGTGTTGAGAGCTGGAGACACCATTAACGAGTTTGGTTGGGATAACAAGCATGCTGGGATTAATGTCCTCATTTCTAAGGAAGTGCTTATGGGAAAAGCAGATTATTTCGAATCTTTCAAGCAGAATGCAGATGGATTTATATGCTCCGTTTTGCCTGGACTTACCCATACCCAAGTCCAATATTCTCCAGGTGGTTTGATCTTCAAGCCTGGAGGGAGTAACATGCAGCATGTAACTTCGCTTTCGTTCCTACTTTTGACTTATTCGAACTATCTAAGCCACGCCAATAAGAACGTGCCATGTGGCATGTCCTCCGCCTCCCCTGCCTTCCTCAAACAATTGGCTAAACGCCAGGTGGACTACATTTTGGGTGACAATCCATTGAGGATGTCTTACATGGTTGGATATGGGCCGCGTTACCCACAGAGGATACACCACCGGGGCAGCTCACTTCCGTCGGTTCAGGCCCATCCTGCTCGTATCGGATGCAAAGCCGGTTCTCGCTATTTTCTGAGTCCAAATCCGAACCCGAACCTGCTGGTTGGGGCGGTCGTGGGGGGACCCAATAGCTCGGATGCATTTCCAGACTCAAGGCCTTACTTTCAAGAATCTGAGCCCACGACGTACATCAATGCGCCGCTTGTGGGCCTACTTTCATATTTTGCAGCCCATTATTGA

Protein Analysis

497

Amino Acids

55.06

Weight (kDa)

9.14

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 37 - 490 7e-157 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23210 AT1G70710
fragaria_vesca FvH4_4g33940 FvH4_6g41450 FvH4_7g27772 FvH4_7g27773 FvH4_7g27774 FvH4_7g27775
malus_domestica MD00G1036700.v1.1 MD07G1097500.v1.1 MD11G1195000.v1.1 MD16G1021500.v1.1
prunus_persica Prupe.1G331000_v2.0.a1 Prupe.1G331000_v2.0.a1 Prupe.2G121700_v2.0.a1 Prupe.2G278700_v2.0.a1 Prupe.2G278800_v2.0.a1
pyrus_communis pycom01g19480 pycom03g11560 pycom06g08760 pycom16g01920
rosa_chinensis RchiOBHm_Chr1g0374571 RchiOBHm_Chr1g0374581 RchiOBHm_Chr1g0374591 RchiOBHm_Chr1g0374601 RchiOBHm_Chr1g0374611 RchiOBHm_Chr2g0157011 RchiOBHm_Chr4g0443471
rosa_laevigata RLG00000005926 RLG00000026724 RLG00000026725 RLG00000026726 RLG00000026727
rosa_multiflora Rmu_co8114132.1_g000001 Rmu_sc0004947.1_g000005 Rmu_sc0004947.1_g000006 Rmu_sc0004947.1_g000007 Rmu_sc0004947.1_g000008 Rmu_sc0009670.1_g000003 Rmu_sc0034696.1_g000001 Rmu_sc0037664.1_g000001 Rmu_ssc0000408.1_g000014
rosa_roxburghii Rroxscaffold_4G00283360 Rroxscaffold_4G00283370 Rroxscaffold_4G00283380 Rroxscaffold_5G00384020
rosa_rugosa Rorug01G0059600 Rorug01G0384100 Rorug01G0384200 Rorug01G0384200 Rorug02G0457500 Rorug04G0346500 Rorug04G0346500 Rorug07G0215300
rosa_samantha Rh1AG395000 Rh1AG395100 Rh1AG395200 Rh1AG395400 Rh1CG372800 Rh1CG372900 Rh1CG373000 Rh1CG373100 Rh1DG390300 Rh1DG390400 Rh1DG390500 Rh1DG390600 Rh2BG536600 Rh2DG545500 Rh4AG402000 Rh4CG429100 Rh4DG409100
rosa_wichuraiana Rw1G035030 Rw1G035040 Rw1G035050 Rw1G035060 Rw4G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1359
AccB1I GGYRCC 2 cut(s) 192, 780
AccI GTMKAC 1 cut(s) 234
AccII CGCG 5 cut(s) 7, 48, 198, 496, 1231
AclWI GGATC 3 cut(s) 347, 528, 541
AcoI YGGCCR 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 422
AcvI CACGTG 1 cut(s) 596
AcyI GRCGYC 4 cut(s) 117, 193, 258, 781
AfaI GTAC 3 cut(s) 509, 674, 1442
AfeI AGCGCT 1 cut(s) 155
AfiI CCNNNNNNNGG 3 cut(s) 381, 403, 1460
AflIII ACRYGT 1 cut(s) 494
AgsI TTSAA 3 cut(s) 934, 1021, 1421
AhlI ACTAGT 1 cut(s) 55
AjiI CACGTC 2 cut(s) 541, 718
AjnI CCWGG 6 cut(s) 435, 729, 970, 1003, 1024, 1167
AluBI AGCT 5 cut(s) 166, 678, 827, 1263, 1386
AluI AGCT 5 cut(s) 166, 678, 827, 1263, 1386
Alw26I GTCTC 2 cut(s) 607, 825
AlwI GGATC 3 cut(s) 347, 528, 541
Ama87I CYCGRG 4 cut(s) 25, 419, 529, 610
Aor51HI AGCGCT 1 cut(s) 155
AoxI GGCC 8 cut(s) 13, 100, 148, 476, 1226, 1281, 1409, 1462
ApeKI GCWGC 8 cut(s) 50, 67, 560, 572, 752, 1042, 1260, 1481
AseI ATTAAT 1 cut(s) 876
Asp700I GAANNNNTTC 1 cut(s) 725
AspLEI GCGC 9 cut(s) 7, 50, 98, 156, 183, 195, 565, 783, 1453
AspS9I GGNCC 4 cut(s) 1226, 1282, 1376, 1462
AsuC2I CCSGG 7 cut(s) 26, 27, 420, 421, 530, 531, 1256
AsuHPI GGTGA 1 cut(s) 1199
AsuII TTCGAA 3 cut(s) 144, 924, 1082
AvaI CYCGRG 4 cut(s) 25, 419, 529, 610
AvaII GGWCC 1 cut(s) 1376
BaeGI GKGCMC 1 cut(s) 704
BamHI GGATCC 1 cut(s) 533
BanI GGYRCC 2 cut(s) 192, 780
BanII GRGCYC 1 cut(s) 1434
BbrPI CACGTG 1 cut(s) 596
BbsI GAAGAC 2 cut(s) 421, 489
BbvI GCAGC 7 cut(s) 54, 62, 547, 559, 764, 1054, 1272
BccI CCATC 4 cut(s) 587, 669, 941, 1293
BceAI ACGGC 6 cut(s) 232, 350, 426, 617, 680, 739
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BciT130I CCWGG 6 cut(s) 437, 731, 972, 1005, 1026, 1169
BciVI GTATCC 1 cut(s) 1239
BclI TGATCA 1 cut(s) 175
BcnI CCSGG 7 cut(s) 26, 27, 420, 421, 530, 531, 1256
BcoDI GTCTC 2 cut(s) 607, 825
BcuI ACTAGT 1 cut(s) 55
BfaI CTAG 1 cut(s) 56
BfoI RGCGCY 5 cut(s) 99, 157, 184, 196, 784
BfuAI ACCTGC 1 cut(s) 1359
BfuI GTATCC 1 cut(s) 1239
Bme18I GGWCC 1 cut(s) 1376
BmeT110I CYCGRG 4 cut(s) 25, 419, 529, 610
BmgBI CACGTC 2 cut(s) 541, 718
BmgT120I GGNCC 4 cut(s) 1226, 1282, 1376, 1462
BmiI GGNNCC 8 cut(s) 194, 220, 388, 417, 535, 782, 1377, 1378
BmsI GCATC 4 cut(s) 141, 779, 1292, 1381
BoxI GACNNNNGTC 1 cut(s) 495
BpiI GAAGAC 2 cut(s) 421, 489
BpmI CTGGAG 4 cut(s) 664, 849, 987, 1047
Bpu14I TTCGAA 3 cut(s) 144, 924, 1082
BpuEI CTTGAG 1 cut(s) 1390
BpuMI CCSGG 7 cut(s) 26, 27, 420, 421, 530, 531, 1256
BsaAI YACGTR 1 cut(s) 596
BsaHI GRCGYC 4 cut(s) 117, 193, 258, 781
BsaJI CCNNGG 5 cut(s) 25, 419, 420, 529, 1255
BsaWI WCCGGW 1 cut(s) 519
BsaXI ACNNNNNCTCC 4 cut(s) 203, 233, 437, 467
Bsc4I CCNNNNNNNGG 3 cut(s) 381, 403, 1460
Bse118I RCCGGY 4 cut(s) 98, 227, 260, 1310
Bse3DI GCAATG 1 cut(s) 206
BseBI CCWGG 6 cut(s) 437, 731, 972, 1005, 1026, 1169
BseDI CCNNGG 5 cut(s) 25, 419, 420, 529, 1255
BseGI GGATG 6 cut(s) 132, 739, 1209, 1285, 1307, 1396
BseLI CCNNNNNNNGG 3 cut(s) 381, 403, 1460
BseMI GCAATG 1 cut(s) 206
BseMII CTCAG 3 cut(s) 700, 1319, 1419
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 1 cut(s) 704
BseXI GCAGC 7 cut(s) 54, 62, 547, 559, 764, 1054, 1272
BseYI CCCAGC 2 cut(s) 468, 869
Bsh1236I CGCG 5 cut(s) 7, 48, 198, 496, 1231
Bsh1285I CGRYCG 2 cut(s) 520, 1368
BshFI GGCC 8 cut(s) 15, 102, 150, 478, 1228, 1283, 1411, 1464
BshNI GGYRCC 2 cut(s) 192, 780
BsiEI CGRYCG 2 cut(s) 520, 1368
BsiHKCI CYCGRG 4 cut(s) 25, 419, 529, 610
BslFI GGGAC 1 cut(s) 1389
BslI CCNNNNNNNGG 3 cut(s) 381, 403, 1460
BsmAI GTCTC 2 cut(s) 607, 825
BsmFI GGGAC 1 cut(s) 1389
BsmI GAATGC 1 cut(s) 946
BsnI GGCC 8 cut(s) 15, 102, 150, 478, 1228, 1283, 1411, 1464
BsoBI CYCGRG 4 cut(s) 25, 419, 529, 610
Bsp119I TTCGAA 3 cut(s) 144, 924, 1082
Bsp1286I GDGCHC 2 cut(s) 704, 1434
Bsp1407I TGTACA 1 cut(s) 507
Bsp143I GATC 4 cut(s) 175, 339, 533, 1014
BspANI GGCC 8 cut(s) 15, 102, 150, 478, 1228, 1283, 1411, 1464
BspCNI CTCAG 3 cut(s) 699, 1320, 1420
BspFNI CGCG 5 cut(s) 7, 48, 198, 496, 1231
BspLI GGNNCC 8 cut(s) 194, 220, 388, 417, 535, 782, 1377, 1378
BspMI ACCTGC 1 cut(s) 1359
BspPI GGATC 3 cut(s) 347, 528, 541
BspT104I TTCGAA 3 cut(s) 144, 924, 1082
BspT107I GGYRCC 2 cut(s) 192, 780
BsrDI GCAATG 1 cut(s) 206
BsrFI RCCGGY 4 cut(s) 98, 227, 260, 1310
BsrGI TGTACA 1 cut(s) 507
BssAI RCCGGY 4 cut(s) 98, 227, 260, 1310
BssECI CCNNGG 5 cut(s) 25, 419, 420, 529, 1255
BssMI GATC 4 cut(s) 175, 339, 533, 1014
BssNI GRCGYC 4 cut(s) 117, 193, 258, 781
Bst2UI CCWGG 6 cut(s) 437, 731, 972, 1005, 1026, 1169
Bst4CI ACNGT 2 cut(s) 505, 744
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 4 cut(s) 117, 193, 258, 781
BstAUI TGTACA 1 cut(s) 507
BstBAI YACGTR 1 cut(s) 596
BstBI TTCGAA 3 cut(s) 144, 924, 1082
BstC8I GCNNGC 9 cut(s) 100, 152, 164, 229, 262, 312, 547, 567, 867
BstDEI CTNAG 5 cut(s) 686, 891, 1091, 1328, 1428
BstENI CCTNNNNNAGG 1 cut(s) 401
BstF5I GGATG 6 cut(s) 132, 739, 1209, 1285, 1307, 1396
BstFNI CGCG 5 cut(s) 7, 48, 198, 496, 1231
BstH2I RGCGCY 5 cut(s) 99, 157, 184, 196, 784
BstHHI GCGC 9 cut(s) 7, 50, 98, 156, 183, 195, 565, 783, 1453
BstKTI GATC 4 cut(s) 178, 342, 536, 1017
BstMAI GTCTC 2 cut(s) 607, 825
BstMBI GATC 4 cut(s) 175, 339, 533, 1014
BstMCI CGRYCG 2 cut(s) 520, 1368
BstMWI GCNNNNNNNGC 6 cut(s) 47, 76, 566, 569, 1139, 1289
BstNI CCWGG 6 cut(s) 437, 731, 972, 1005, 1026, 1169
BstNSI RCATGY 4 cut(s) 869, 1042, 1049, 1126
BstPAI GACNNNNGTC 1 cut(s) 495
BstSLI GKGCMC 1 cut(s) 704
BstUI CGCG 5 cut(s) 7, 48, 198, 496, 1231
BstV1I GCAGC 7 cut(s) 54, 62, 547, 559, 764, 1054, 1272
BstV2I GAAGAC 2 cut(s) 421, 489
BstX2I RGATCY 1 cut(s) 533
BstYI RGATCY 1 cut(s) 533
BsuI GTATCC 1 cut(s) 1239
BsuRI GGCC 8 cut(s) 15, 102, 150, 478, 1228, 1283, 1411, 1464
BtrI CACGTC 2 cut(s) 541, 718
BtsCI GGATG 6 cut(s) 132, 739, 1209, 1285, 1307, 1396
BtsIMutI CAGTG 1 cut(s) 501
BveI ACCTGC 1 cut(s) 1359
Cac8I GCNNGC 9 cut(s) 100, 152, 164, 229, 262, 312, 547, 567, 867
CfoI GCGC 9 cut(s) 7, 50, 98, 156, 183, 195, 565, 783, 1453
Cfr10I RCCGGY 4 cut(s) 98, 227, 260, 1310
Cfr13I GGNCC 4 cut(s) 1226, 1282, 1376, 1462
Cfr9I CCCGGG 3 cut(s) 25, 419, 529
CseI GACGC 3 cut(s) 125, 266, 485
Csp6I GTAC 3 cut(s) 508, 673, 1441
CviAII CATG 8 cut(s) 343, 487, 866, 1039, 1046, 1116, 1123, 1213
CviQI GTAC 3 cut(s) 508, 673, 1441
DdeI CTNAG 5 cut(s) 686, 891, 1091, 1328, 1428
DinI GGCGCC 2 cut(s) 194, 782
DpnI GATC 4 cut(s) 177, 341, 535, 1016
DpnII GATC 4 cut(s) 175, 339, 533, 1014
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
EciI GGCGGA 1 cut(s) 1120
Eco147I AGGCCT 1 cut(s) 1411
Eco24I GRGCYC 1 cut(s) 1434
Eco47I GGWCC 1 cut(s) 1376
Eco47III AGCGCT 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 422
Eco72I CACGTG 1 cut(s) 596
Eco88I CYCGRG 4 cut(s) 25, 419, 529, 610
EcoNI CCTNNNNNAGG 1 cut(s) 401
EcoO109I RGGNCCY 1 cut(s) 1376
EcoRII CCWGG 6 cut(s) 435, 729, 970, 1003, 1024, 1167
EcoT22I ATGCAT 1 cut(s) 1396
EcoT38I GRGCYC 1 cut(s) 1434
EgeI GGCGCC 2 cut(s) 194, 782
EheI GGCGCC 2 cut(s) 194, 782
FaeI CATG 8 cut(s) 346, 490, 869, 1042, 1049, 1119, 1126, 1216
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FaqI GGGAC 1 cut(s) 1389
FatI CATG 8 cut(s) 342, 486, 865, 1038, 1045, 1115, 1122, 1212
FauI CCCGC 2 cut(s) 46, 610
FbaI TGATCA 1 cut(s) 175
FblI GTMKAC 1 cut(s) 234
FokI GGATG 6 cut(s) 119, 746, 1216, 1272, 1314, 1403
FriOI GRGCYC 1 cut(s) 1434
FspBI CTAG 1 cut(s) 56
GlaI GCGC 9 cut(s) 6, 49, 97, 155, 182, 194, 564, 782, 1452
GsaI CCCAGC 2 cut(s) 472, 873
GsuI CTGGAG 4 cut(s) 664, 849, 987, 1047
HaeII RGCGCY 5 cut(s) 99, 157, 184, 196, 784
HaeIII GGCC 8 cut(s) 15, 102, 150, 478, 1228, 1283, 1411, 1464
HgaI GACGC 3 cut(s) 125, 266, 485
HhaI GCGC 9 cut(s) 7, 50, 98, 156, 183, 195, 565, 783, 1453
Hin1I GRCGYC 4 cut(s) 117, 193, 258, 781
Hin1II CATG 8 cut(s) 346, 490, 869, 1042, 1049, 1119, 1126, 1216
Hin6I GCGC 9 cut(s) 5, 48, 96, 154, 181, 193, 563, 781, 1451
HinP1I GCGC 9 cut(s) 5, 48, 96, 154, 181, 193, 563, 781, 1451
HinfI GANTC 5 cut(s) 200, 926, 1330, 1403, 1424
HphI GGTGA 1 cut(s) 1199
Hpy166II GTNNAC 5 cut(s) 235, 297, 508, 721, 1174
Hpy188I TCNGA 9 cut(s) 352, 457, 538, 689, 1301, 1329, 1341, 1390, 1429
Hpy188III TCNNGA 7 cut(s) 298, 334, 400, 612, 774, 1400, 1421
Hpy8I GTNNAC 5 cut(s) 235, 297, 508, 721, 1174
HpyAV CCTTC 4 cut(s) 140, 397, 771, 1153
HpyCH4III ACNGT 2 cut(s) 505, 744
HpyCH4IV ACGT 7 cut(s) 270, 379, 540, 595, 717, 1110, 1439
HpyCH4V TGCA 7 cut(s) 211, 763, 944, 1042, 1305, 1394, 1481
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 76, 566, 569, 1139, 1289
HpyF3I CTNAG 5 cut(s) 686, 891, 1091, 1328, 1428
HpySE526I ACGT 7 cut(s) 270, 379, 540, 595, 717, 1110, 1439
Hsp92I GRCGYC 4 cut(s) 117, 193, 258, 781
Hsp92II CATG 8 cut(s) 346, 490, 869, 1042, 1049, 1119, 1126, 1216
HspAI GCGC 9 cut(s) 5, 48, 96, 154, 181, 193, 563, 781, 1451
KasI GGCGCC 2 cut(s) 192, 780
KflI GGGWCCC 1 cut(s) 1376
KroI GCCGGC 3 cut(s) 98, 227, 260
KroNI GCCGGC 3 cut(s) 100, 229, 262
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 4 cut(s) 175, 339, 533, 1014
LmnI GCTCC 9 cut(s) 75, 161, 171, 224, 318, 352, 683, 749, 965
Lsp1109I GCAGC 7 cut(s) 54, 62, 547, 559, 764, 1054, 1272
LweI GCATC 4 cut(s) 141, 779, 1292, 1381
MaeI CTAG 1 cut(s) 56
MaeII ACGT 7 cut(s) 270, 379, 540, 595, 717, 1110, 1439
MaeIII GTNAC 8 cut(s) 248, 591, 596, 738, 1034, 1048, 1187, 1232
MalI GATC 4 cut(s) 177, 341, 535, 1016
MboI GATC 4 cut(s) 175, 339, 533, 1014
MboII GAAGA 5 cut(s) 130, 133, 421, 494, 1009
MfeI CAATTG 1 cut(s) 1154
MflI RGATCY 1 cut(s) 533
MhlI GDGCHC 2 cut(s) 704, 1434
MluCI AATT 1 cut(s) 1154
MluI ACGCGT 1 cut(s) 494
Mly113I GGCGCC 2 cut(s) 193, 781
MlyI GAGTC 3 cut(s) 194, 1339, 1397
MmeI TCCRAC 4 cut(s) 330, 480, 561, 1198
Mph1103I ATGCAT 1 cut(s) 1396
MreI CGCCGGCG 2 cut(s) 227, 260
MroNI GCCGGC 3 cut(s) 98, 227, 260
MroXI GAANNNNTTC 1 cut(s) 725
MseI TTAA 2 cut(s) 840, 876
MslI CAYNNNNRTG 1 cut(s) 666
MspA1I CMGCKG 2 cut(s) 560, 572
MunI CAATTG 1 cut(s) 1154
Mva1269I GAATGC 1 cut(s) 946
MvaI CCWGG 6 cut(s) 437, 731, 972, 1005, 1026, 1169
MvnI CGCG 5 cut(s) 7, 48, 198, 496, 1231
MwoI GCNNNNNNNGC 6 cut(s) 47, 76, 566, 569, 1139, 1289
NaeI GCCGGC 3 cut(s) 100, 229, 262
NarI GGCGCC 2 cut(s) 193, 781
NciI CCSGG 7 cut(s) 26, 27, 420, 421, 530, 531, 1256
NdeII GATC 4 cut(s) 175, 339, 533, 1014
NgoMIV GCCGGC 3 cut(s) 98, 227, 260
NlaIII CATG 8 cut(s) 346, 490, 869, 1042, 1049, 1119, 1126, 1216
NlaIV GGNNCC 8 cut(s) 194, 220, 388, 417, 535, 782, 1377, 1378
NmuCI GTSAC 3 cut(s) 591, 596, 1187
NsiI ATGCAT 1 cut(s) 1396
NspI RCATGY 4 cut(s) 869, 1042, 1049, 1126
NspV TTCGAA 3 cut(s) 144, 924, 1082
PaeI GCATGC 1 cut(s) 869
PaeR7I CTCGAG 1 cut(s) 610
PceI AGGCCT 1 cut(s) 1411
PcsI WCGNNNNNNNCGW 3 cut(s) 111, 261, 546
PctI GAATGC 1 cut(s) 946
PdiI GCCGGC 3 cut(s) 100, 229, 262
PdmI GAANNNNTTC 1 cut(s) 725
PfeI GAWTC 2 cut(s) 926, 1424
PflFI GACNNNGTC 1 cut(s) 269
PfoI TCCNGGA 1 cut(s) 729
PleI GAGTC 3 cut(s) 194, 1338, 1397
PluTI GGCGCC 2 cut(s) 196, 784
PmaCI CACGTG 1 cut(s) 596
PmlI CACGTG 1 cut(s) 596
PpsI GAGTC 3 cut(s) 194, 1338, 1397
Ppu21I YACGTR 1 cut(s) 596
PpuMI RGGWCCY 1 cut(s) 1376
PshAI GACNNNNGTC 1 cut(s) 495
PshBI ATTAAT 1 cut(s) 876
Psp5II RGGWCCY 1 cut(s) 1376
Psp6I CCWGG 6 cut(s) 435, 729, 970, 1003, 1024, 1167
PspCI CACGTG 1 cut(s) 596
PspFI CCCAGC 2 cut(s) 468, 869
PspGI CCWGG 6 cut(s) 435, 729, 970, 1003, 1024, 1167
PspN4I GGNNCC 8 cut(s) 194, 220, 388, 417, 535, 782, 1377, 1378
PspPI GGNCC 4 cut(s) 1226, 1282, 1376, 1462
PspPPI RGGWCCY 1 cut(s) 1376
PsuI RGATCY 1 cut(s) 533
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 3 cut(s) 509, 674, 1442
RsaNI GTAC 3 cut(s) 508, 673, 1441
RseI CAYNNNNRTG 1 cut(s) 666
SaqAI TTAA 2 cut(s) 840, 876
Sau3AI GATC 4 cut(s) 175, 339, 533, 1014
Sau96I GGNCC 4 cut(s) 1226, 1282, 1376, 1462
SchI GAGTC 3 cut(s) 194, 1339, 1397
SduI GDGCHC 2 cut(s) 704, 1434
SfaNI GCATC 4 cut(s) 141, 779, 1292, 1381
SfoI GGCGCC 2 cut(s) 194, 782
Sfr274I CTCGAG 1 cut(s) 610
SfuI TTCGAA 3 cut(s) 144, 924, 1082
SgrAI CRCCGGYG 2 cut(s) 227, 260
SinI GGWCC 1 cut(s) 1376
SlaI CTCGAG 1 cut(s) 610
SmaI CCCGGG 3 cut(s) 27, 421, 531
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 2 cut(s) 610, 1405
SmoI CTYRAG 2 cut(s) 610, 1405
SpeI ACTAGT 1 cut(s) 55
SphI GCATGC 1 cut(s) 869
Sse9I AATT 1 cut(s) 1154
SseBI AGGCCT 1 cut(s) 1411
SspDI GGCGCC 2 cut(s) 192, 780
SspI AATATT 1 cut(s) 998
SspMI CTAG 1 cut(s) 56
StuI AGGCCT 1 cut(s) 1411
TaaI ACNGT 2 cut(s) 505, 744
TaiI ACGT 7 cut(s) 273, 382, 543, 598, 720, 1113, 1442
TaqI TCGA 7 cut(s) 144, 516, 611, 628, 645, 924, 1082
TasI AATT 1 cut(s) 1154
TatI WGTACW 1 cut(s) 507
TauI GCSGC 5 cut(s) 198, 560, 572, 1231, 1456
TfiI GAWTC 2 cut(s) 926, 1424
Tru1I TTAA 2 cut(s) 840, 876
Tru9I TTAA 2 cut(s) 840, 876
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 3 cut(s) 591, 596, 1187
TseI GCWGC 8 cut(s) 50, 67, 560, 572, 752, 1042, 1260, 1481
Tsp45I GTSAC 3 cut(s) 591, 596, 1187
TspDTI ATGAA 1 cut(s) 1461
TspGWI ACGGA 2 cut(s) 952, 1260
TspMI CCCGGG 3 cut(s) 25, 419, 529
TspRI CASTG 1 cut(s) 508
Tth111I GACNNNGTC 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 1376
VspI ATTAAT 1 cut(s) 876
XagI CCTNNNNNAGG 1 cut(s) 401
XceI RCATGY 4 cut(s) 869, 1042, 1049, 1126
XhoI CTCGAG 1 cut(s) 610
XmaI CCCGGG 3 cut(s) 25, 419, 529
XmiI GTMKAC 1 cut(s) 234
XmnI GAANNNNTTC 1 cut(s) 725
XspI CTAG 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 1396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.