Rmu_sc0034696.1_g000001

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034696.1
OG0000663
Physical Location & Seq
Reverse (-)
1 .. 2141
2141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034696.1_g000001.1.cds

Sequence Viewer

Length: 905 bp
atgacagctaactctgggagtcctggtgcaagaatctctccattcccagcttcaattaaagttgttgatactagcagcactagcaatgtctgccacgccttcccacaactacgcggatcgatatactctttgtccaagagtattttgtttttcgaagggcagaggtcgggatcgttaccgagtacccaacgagtgacttggaggaaagattcagctctccattatggcaatgacgttcatatggatctggtagggggttactatgatgctggagacaacgtgaagttcaactttcccatggcattcacaacaacaatgttgtcttggagtgttctagagtttggtgaatcaatgggctcaaaacttccatatgcttcggaagctataagatggggcactgattacttgcttaaatccacagatgcttctggttctgttgccggctttgttggcaaccccgtaggcgaccacacttgttcggacgactggtactctggtttgctacttgaccgagccaaggaggttttcgagtttgcagataagtacagaggatcttataacgacagcattggagaaacggcgtgcccgttttactgcgatttcaatggctacatggatgagttgatttggagtgcttcatggatgatcgacttcaccaaaggacaggttgactatatactaggaagcaacccattgggaatgtcatacatggtgggatatggttcaaagtttccaaagagaatacaccaccgcgcttcggtgctacgttctatggatcagcagccgggcaacattgaatgtcacgcaggaacgccatatttcgagactcaagctccaaatcagagcttgctaataggcgcgattgtgggaggacctgctgagaacgattctttcgaagactctcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

302

Amino Acids

33.17

Weight (kDa)

5.11

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23210 AT1G70710
fragaria_vesca FvH4_4g33940 FvH4_6g41450 FvH4_7g27772 FvH4_7g27773 FvH4_7g27774 FvH4_7g27775
malus_domestica MD00G1036700.v1.1 MD07G1097500.v1.1 MD11G1195000.v1.1 MD16G1021500.v1.1
prunus_persica Prupe.1G331000_v2.0.a1 Prupe.1G331000_v2.0.a1 Prupe.2G121700_v2.0.a1 Prupe.2G278700_v2.0.a1 Prupe.2G278800_v2.0.a1
pyrus_communis pycom01g19480 pycom03g11560 pycom06g08760 pycom16g01920
rosa_chinensis RchiOBHm_Chr1g0374571 RchiOBHm_Chr1g0374581 RchiOBHm_Chr1g0374591 RchiOBHm_Chr1g0374601 RchiOBHm_Chr1g0374611 RchiOBHm_Chr2g0157011 RchiOBHm_Chr4g0443471
rosa_laevigata RLG00000005926 RLG00000026724 RLG00000026725 RLG00000026726 RLG00000026727
rosa_multiflora Rmu_co8114132.1_g000001 Rmu_sc0004947.1_g000005 Rmu_sc0004947.1_g000006 Rmu_sc0004947.1_g000007 Rmu_sc0004947.1_g000008 Rmu_sc0009670.1_g000003 Rmu_sc0034696.1_g000001 Rmu_sc0037664.1_g000001 Rmu_ssc0000408.1_g000014
rosa_roxburghii Rroxscaffold_4G00283360 Rroxscaffold_4G00283370 Rroxscaffold_4G00283380 Rroxscaffold_5G00384020
rosa_rugosa Rorug01G0059600 Rorug01G0384100 Rorug01G0384200 Rorug01G0384200 Rorug02G0457500 Rorug04G0346500 Rorug04G0346500 Rorug07G0215300
rosa_samantha Rh1AG395000 Rh1AG395100 Rh1AG395200 Rh1AG395400 Rh1CG372800 Rh1CG372900 Rh1CG373000 Rh1CG373100 Rh1DG390300 Rh1DG390400 Rh1DG390500 Rh1DG390600 Rh2BG536600 Rh2DG545500 Rh4AG402000 Rh4CG429100 Rh4DG409100
rosa_wichuraiana Rw1G035030 Rw1G035040 Rw1G035050 Rw1G035060 Rw4G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 558
Acc36I ACCTGC 1 cut(s) 883
AccII CGCG 3 cut(s) 114, 753, 860
AciI CCGC 2 cut(s) 114, 751
AclWI GGATC 5 cut(s) 124, 178, 252, 559, 783
AfaI GTAC 3 cut(s) 184, 491, 545
AfiI CCNNNNNNNGG 2 cut(s) 517, 757
AgsI TTSAA 5 cut(s) 54, 289, 604, 726, 797
AjnI CCWGG 1 cut(s) 22
AjuI GAANNNNNNNTTGG 2 cut(s) 509, 541
AluBI AGCT 6 cut(s) 8, 50, 215, 383, 833, 846
AluI AGCT 6 cut(s) 8, 50, 215, 383, 833, 846
Alw26I GTCTC 2 cut(s) 267, 818
AlwI GGATC 5 cut(s) 124, 178, 252, 559, 783
ApeKI GCWGC 2 cut(s) 75, 781
AspLEI GCGC 2 cut(s) 755, 860
AspS9I GGNCC 1 cut(s) 872
AsuC2I CCSGG 1 cut(s) 786
AsuHPI GGTGA 2 cut(s) 356, 646
AsuII TTCGAA 2 cut(s) 153, 894
AvaII GGWCC 1 cut(s) 872
BaeGI GKGCMC 2 cut(s) 398, 587
BaeI ACNNNNGTAYC 2 cut(s) 481, 514
BanII GRGCYC 1 cut(s) 359
BbvI GCAGC 2 cut(s) 87, 793
BccI CCATC 1 cut(s) 384
BceAI ACGGC 1 cut(s) 594
BciT130I CCWGG 1 cut(s) 24
BcnI CCSGG 1 cut(s) 786
BcoDI GTCTC 2 cut(s) 267, 818
BfaI CTAG 4 cut(s) 72, 81, 335, 680
BfuAI ACCTGC 1 cut(s) 883
BisI GCNGC 2 cut(s) 76, 782
BlsI GCNGC 2 cut(s) 77, 783
Bme1390I CCNGG 2 cut(s) 24, 786
Bme18I GGWCC 1 cut(s) 872
BmgT120I GGNCC 1 cut(s) 872
BmrFI CCNGG 2 cut(s) 24, 786
BmsI GCATC 2 cut(s) 256, 412
BpmI CTGGAG 1 cut(s) 291
Bpu14I TTCGAA 2 cut(s) 153, 894
BpuEI CTTGAG 1 cut(s) 813
BpuMI CCSGG 1 cut(s) 786
Bsa29I ATCGAT 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 297, 516
BsaXI ACNNNNNCTCC 6 cut(s) 10, 40, 264, 294, 817, 847
Bsc4I CCNNNNNNNGG 2 cut(s) 517, 757
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 1 cut(s) 491
Bse3DI GCAATG 2 cut(s) 91, 235
BseBI CCWGG 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 297, 516
BseGI GGATG 2 cut(s) 622, 648
BseLI CCNNNNNNNGG 2 cut(s) 517, 757
BseMI GCAATG 2 cut(s) 91, 235
BseMII CTCAG 1 cut(s) 870
BseNI ACTGG 1 cut(s) 491
BseSI GKGCMC 2 cut(s) 398, 587
BseXI GCAGC 2 cut(s) 87, 793
BseYI CCCAGC 1 cut(s) 46
Bsh1236I CGCG 3 cut(s) 114, 753, 860
BshVI ATCGAT 1 cut(s) 119
BsiSI CCGG 2 cut(s) 441, 785
BslI CCNNNNNNNGG 2 cut(s) 517, 757
BsmAI GTCTC 2 cut(s) 267, 818
BsmI GAATGC 1 cut(s) 302
Bsp119I TTCGAA 2 cut(s) 153, 894
Bsp1286I GDGCHC 3 cut(s) 359, 398, 587
Bsp143I GATC 6 cut(s) 116, 170, 244, 551, 645, 775
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 2 cut(s) 114, 751
BspCNI CTCAG 1 cut(s) 871
BspDI ATCGAT 1 cut(s) 119
BspFNI CGCG 3 cut(s) 114, 753, 860
BspMI ACCTGC 1 cut(s) 883
BspPI GGATC 5 cut(s) 124, 178, 252, 559, 783
BspT104I TTCGAA 2 cut(s) 153, 894
BsrDI GCAATG 2 cut(s) 91, 235
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 1 cut(s) 491
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 2 cut(s) 297, 516
BssMI GATC 6 cut(s) 116, 170, 244, 551, 645, 775
BssT1I CCWWGG 2 cut(s) 297, 516
Bst2UI CCWGG 1 cut(s) 24
BstAPI GCANNNNNTGC 1 cut(s) 90
BstBI TTCGAA 2 cut(s) 153, 894
BstC8I GCNNGC 3 cut(s) 442, 583, 848
BstDEI CTNAG 1 cut(s) 879
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 2 cut(s) 622, 648
BstFNI CGCG 3 cut(s) 114, 753, 860
BstHHI GCGC 2 cut(s) 755, 860
BstKTI GATC 6 cut(s) 119, 173, 247, 554, 648, 778
BstMAI GTCTC 2 cut(s) 267, 818
BstMBI GATC 6 cut(s) 116, 170, 244, 551, 645, 775
BstMWI GCNNNNNNNGC 4 cut(s) 81, 90, 380, 450
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 2 cut(s) 22, 784
BstSLI GKGCMC 2 cut(s) 398, 587
BstUI CGCG 3 cut(s) 114, 753, 860
BstV1I GCAGC 2 cut(s) 87, 793
BstX2I RGATCY 2 cut(s) 244, 551
BstYI RGATCY 2 cut(s) 244, 551
Bsu15I ATCGAT 1 cut(s) 119
BsuTUI ATCGAT 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 297
BtsCI GGATG 2 cut(s) 622, 648
BtsIMutI CAGTG 1 cut(s) 396
BveI ACCTGC 1 cut(s) 883
Cac8I GCNNGC 3 cut(s) 442, 583, 848
CfoI GCGC 2 cut(s) 755, 860
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 1 cut(s) 872
ClaI ATCGAT 1 cut(s) 119
Csp6I GTAC 3 cut(s) 183, 490, 544
CviAII CATG 4 cut(s) 298, 613, 639, 709
CviQI GTAC 3 cut(s) 183, 490, 544
DdeI CTNAG 1 cut(s) 879
DpnI GATC 6 cut(s) 118, 172, 246, 553, 647, 777
DpnII GATC 6 cut(s) 116, 170, 244, 551, 645, 775
Eco130I CCWWGG 2 cut(s) 297, 516
Eco24I GRGCYC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 872
EcoO109I RGGNCCY 1 cut(s) 872
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 2 cut(s) 297, 516
EcoT38I GRGCYC 1 cut(s) 359
ErhI CCWWGG 2 cut(s) 297, 516
FaeI CATG 4 cut(s) 301, 616, 642, 712
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 4 cut(s) 297, 612, 638, 708
FauNDI CATATG 2 cut(s) 240, 370
Fnu4HI GCNGC 2 cut(s) 76, 782
FokI GGATG 2 cut(s) 629, 655
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 2 cut(s) 76, 782
FspBI CTAG 4 cut(s) 72, 81, 335, 680
GlaI GCGC 2 cut(s) 754, 859
GluI GCNGC 2 cut(s) 76, 782
GsaI CCCAGC 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 291
HapII CCGG 2 cut(s) 441, 785
HhaI GCGC 2 cut(s) 755, 860
Hin1II CATG 4 cut(s) 301, 616, 642, 712
Hin6I GCGC 2 cut(s) 753, 858
HinP1I GCGC 2 cut(s) 753, 858
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HinfI GANTC 7 cut(s) 19, 33, 209, 347, 826, 887, 899
HpaII CCGG 2 cut(s) 441, 785
HphI GGTGA 2 cut(s) 356, 646
Hpy166II GTNNAC 1 cut(s) 670
Hpy188I TCNGA 3 cut(s) 379, 481, 843
Hpy188III TCNNGA 3 cut(s) 168, 335, 823
Hpy8I GTNNAC 1 cut(s) 670
HpyAV CCTTC 2 cut(s) 109, 149
HpyCH4IV ACGT 3 cut(s) 234, 279, 766
HpyCH4V TGCA 2 cut(s) 29, 536
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 90, 380, 450
HpyF3I CTNAG 1 cut(s) 879
HpySE526I ACGT 3 cut(s) 234, 279, 766
Hsp92II CATG 4 cut(s) 301, 616, 642, 712
HspAI GCGC 2 cut(s) 753, 858
KroI GCCGGC 1 cut(s) 440
KroNI GCCGGC 1 cut(s) 442
Kzo9I GATC 6 cut(s) 116, 170, 244, 551, 645, 775
LmnI GCTCC 1 cut(s) 838
Lsp1109I GCAGC 2 cut(s) 87, 793
LweI GCATC 2 cut(s) 256, 412
MaeI CTAG 4 cut(s) 72, 81, 335, 680
MaeII ACGT 3 cut(s) 234, 279, 766
MaeIII GTNAC 4 cut(s) 174, 193, 257, 800
MalI GATC 6 cut(s) 118, 172, 246, 553, 647, 777
MboI GATC 6 cut(s) 116, 170, 244, 551, 645, 775
MflI RGATCY 2 cut(s) 244, 551
MhlI GDGCHC 3 cut(s) 359, 398, 587
MluCI AATT 1 cut(s) 54
MlyI GAGTC 3 cut(s) 28, 820, 893
MnlI CCTC 5 cut(s) 156, 195, 514, 542, 863
MroNI GCCGGC 1 cut(s) 440
MseI TTAA 2 cut(s) 57, 411
MspI CCGG 2 cut(s) 441, 785
MspR9I CCNGG 2 cut(s) 24, 786
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 1 cut(s) 24
MvnI CGCG 3 cut(s) 114, 753, 860
MwoI GCNNNNNNNGC 4 cut(s) 81, 90, 380, 450
NaeI GCCGGC 1 cut(s) 442
NciI CCSGG 1 cut(s) 786
NcoI CCATGG 1 cut(s) 297
NdeI CATATG 2 cut(s) 240, 370
NdeII GATC 6 cut(s) 116, 170, 244, 551, 645, 775
NgoMIV GCCGGC 1 cut(s) 440
NlaIII CATG 4 cut(s) 301, 616, 642, 712
NmuCI GTSAC 2 cut(s) 193, 800
NspV TTCGAA 2 cut(s) 153, 894
PcsI WCGNNNNNNNCGW 2 cut(s) 584, 891
PctI GAATGC 1 cut(s) 302
PdiI GCCGGC 1 cut(s) 442
PfeI GAWTC 4 cut(s) 33, 209, 347, 887
PkrI GCNGC 2 cut(s) 77, 783
PleI GAGTC 3 cut(s) 27, 820, 893
PpsI GAGTC 3 cut(s) 27, 820, 893
PpuMI RGGWCCY 1 cut(s) 872
PsiI TTATAA 1 cut(s) 558
Psp5II RGGWCCY 1 cut(s) 872
Psp6I CCWGG 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 1 cut(s) 22
PspPI GGNCC 1 cut(s) 872
PspPPI RGGWCCY 1 cut(s) 872
PsuI RGATCY 2 cut(s) 244, 551
RsaI GTAC 3 cut(s) 184, 491, 545
RsaNI GTAC 3 cut(s) 183, 490, 544
SaqAI TTAA 2 cut(s) 57, 411
SatI GCNGC 2 cut(s) 76, 782
Sau3AI GATC 6 cut(s) 116, 170, 244, 551, 645, 775
Sau96I GGNCC 1 cut(s) 872
SchI GAGTC 3 cut(s) 28, 820, 893
ScrFI CCNGG 2 cut(s) 24, 786
SduI GDGCHC 3 cut(s) 359, 398, 587
SfaNI GCATC 2 cut(s) 256, 412
SfuI TTCGAA 2 cut(s) 153, 894
SinI GGWCC 1 cut(s) 872
SmlI CTYRAG 1 cut(s) 828
SmoI CTYRAG 1 cut(s) 828
Sse9I AATT 1 cut(s) 54
SsiI CCGC 2 cut(s) 114, 751
SspMI CTAG 4 cut(s) 72, 81, 335, 680
StyD4I CCNGG 2 cut(s) 22, 784
StyI CCWWGG 2 cut(s) 297, 516
TaiI ACGT 3 cut(s) 237, 282, 769
TaqI TCGA 6 cut(s) 119, 153, 528, 648, 822, 894
TaqII GACCGA 1 cut(s) 525
TasI AATT 1 cut(s) 54
TatI WGTACW 1 cut(s) 543
TfiI GAWTC 4 cut(s) 33, 209, 347, 887
Tru1I TTAA 2 cut(s) 57, 411
Tru9I TTAA 2 cut(s) 57, 411
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 2 cut(s) 193, 800
TseI GCWGC 2 cut(s) 75, 781
Tsp45I GTSAC 2 cut(s) 193, 800
TspDTI ATGAA 2 cut(s) 227, 627
TspRI CASTG 1 cut(s) 403
VpaK11BI GGWCC 1 cut(s) 872
XbaI TCTAGA 1 cut(s) 334
XspI CTAG 4 cut(s) 72, 81, 335, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.