RchiOBHm_Chr2g0157011

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000663
Physical Location & Seq
Reverse (-)
73494921 .. 73495663
743 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52577

Sequence Viewer

Length: 696 bp
ATGGATCTGGTAGGGGGTTACTATGATGCTGGAGACAACGTGAAGTTCAACTTTCCCATGGCATTCACAACAACAATGTTGTCTTGGAGTGTTCTAGAGTTTGGTGAATCAATGGGCTCAGAACTTCCATATGCTTCGGAAGCTATAAGATGGGGCACTGATTACTTGCTTAAATCCACAGATGCTTTTGGTTCTGTTGCCGGCTTTGTTGGCGACCCCGTAGGCGACCACACTTGTTGGGAAAGACCCGAAGATATGGACACTCCTCGAACATCCTACATAATAACCAGAGAAAAGCCAGGCAAAGAAGTATCTGCCGAAACACCGAAACTGCAGCTGCCCTTGCAGTTTCTTCCATGGTTTTACAGGTTTTCGAGTTTGCAGATAAGTACAGAGGATCTTATAACGACAGCATTGGGGAAGCGGCGTGCCCGTCTGCCGAAACACCGAAACTGCAGCTGCCCTTGCAGTTTCTTCCATGGTTTTACAGGTTCGGACGACTGGTACTCTGGTTTGCTACTTGACCGAGCCAAGGAGGTTTTCGAGTTTGCAGATAAGTACAGAGGATCTTATAACGACAGCATTGGGGAAGCGGCGTGCCCGTTTTACTGCGATTTCAATGGCTACATGGATGAGTTGATTTGGAGTGCTTCATGGTTGTACAAGGCTACAAAGGATCCCTATTATTTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

231

Amino Acids

26.32

Weight (kDa)

4.79

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 1 - 108 1.5e-38 Glycosyl hydrolase family 9
Glyco_hydro_9 PF00759 162 - 231 1.1e-17 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23210 AT1G70710
fragaria_vesca FvH4_4g33940 FvH4_6g41450 FvH4_7g27772 FvH4_7g27773 FvH4_7g27774 FvH4_7g27775
malus_domestica MD00G1036700.v1.1 MD07G1097500.v1.1 MD11G1195000.v1.1 MD16G1021500.v1.1
prunus_persica Prupe.1G331000_v2.0.a1 Prupe.1G331000_v2.0.a1 Prupe.2G121700_v2.0.a1 Prupe.2G278700_v2.0.a1 Prupe.2G278800_v2.0.a1
pyrus_communis pycom01g19480 pycom03g11560 pycom06g08760 pycom16g01920
rosa_chinensis RchiOBHm_Chr1g0374571 RchiOBHm_Chr1g0374581 RchiOBHm_Chr1g0374591 RchiOBHm_Chr1g0374601 RchiOBHm_Chr1g0374611 RchiOBHm_Chr2g0157011 RchiOBHm_Chr4g0443471
rosa_laevigata RLG00000005926 RLG00000026724 RLG00000026725 RLG00000026726 RLG00000026727
rosa_multiflora Rmu_co8114132.1_g000001 Rmu_sc0004947.1_g000005 Rmu_sc0004947.1_g000006 Rmu_sc0004947.1_g000007 Rmu_sc0004947.1_g000008 Rmu_sc0009670.1_g000003 Rmu_sc0034696.1_g000001 Rmu_sc0037664.1_g000001 Rmu_ssc0000408.1_g000014
rosa_roxburghii Rroxscaffold_4G00283360 Rroxscaffold_4G00283370 Rroxscaffold_4G00283380 Rroxscaffold_5G00384020
rosa_rugosa Rorug01G0059600 Rorug01G0384100 Rorug01G0384200 Rorug01G0384200 Rorug02G0457500 Rorug04G0346500 Rorug04G0346500 Rorug07G0215300
rosa_samantha Rh1AG395000 Rh1AG395100 Rh1AG395200 Rh1AG395400 Rh1CG372800 Rh1CG372900 Rh1CG373000 Rh1CG373100 Rh1DG390300 Rh1DG390400 Rh1DG390500 Rh1DG390600 Rh2BG536600 Rh2DG545500 Rh4AG402000 Rh4CG429100 Rh4DG409100
rosa_wichuraiana Rw1G035030 Rw1G035040 Rw1G035050 Rw1G035060 Rw4G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 404, 573
AciI CCGC 2 cut(s) 424, 593
AclWI GGATC 5 cut(s) 12, 405, 574, 671, 684
AfaI GTAC 4 cut(s) 391, 506, 560, 662
AfiI CCNNNNNNNGG 1 cut(s) 532
AgsI TTSAA 3 cut(s) 49, 619, 691
AjnI CCWGG 1 cut(s) 298
AjuI GAANNNNNNNTTGG 2 cut(s) 524, 556
AluBI AGCT 3 cut(s) 143, 337, 459
AluI AGCT 3 cut(s) 143, 337, 459
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 5 cut(s) 12, 405, 574, 671, 684
ApeKI GCWGC 4 cut(s) 334, 337, 456, 459
AsuHPI GGTGA 1 cut(s) 116
BaeGI GKGCMC 3 cut(s) 158, 433, 602
BaeI ACNNNNGTAYC 2 cut(s) 496, 529
BamHI GGATCC 1 cut(s) 676
BanII GRGCYC 1 cut(s) 119
BbvI GCAGC 4 cut(s) 324, 346, 446, 468
BccI CCATC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 2 cut(s) 95, 694
BfmI CTRYAG 2 cut(s) 332, 454
BisI GCNGC 6 cut(s) 335, 338, 425, 457, 460, 594
BlsI GCNGC 6 cut(s) 336, 339, 426, 458, 461, 595
Bme1390I CCNGG 1 cut(s) 300
BmiI GGNNCC 1 cut(s) 678
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 2 cut(s) 16, 172
BpmI CTGGAG 1 cut(s) 51
BsaJI CCNNGG 4 cut(s) 57, 356, 478, 531
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 1 cut(s) 532
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 506
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 4 cut(s) 57, 356, 478, 531
BseGI GGATG 2 cut(s) 272, 637
BseLI CCNNNNNNNGG 1 cut(s) 532
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 1 cut(s) 255
BseSI GKGCMC 3 cut(s) 158, 433, 602
BseXI GCAGC 4 cut(s) 324, 346, 446, 468
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 532
BsmAI GTCTC 1 cut(s) 27
BsmI GAATGC 1 cut(s) 62
Bsp1286I GDGCHC 4 cut(s) 119, 158, 433, 602
Bsp1407I TGTACA 1 cut(s) 660
Bsp143I GATC 4 cut(s) 4, 397, 566, 676
Bsp19I CCATGG 3 cut(s) 57, 356, 478
BspACI CCGC 2 cut(s) 424, 593
BspCNI CTCAG 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 678
BspMAI CTGCAG 2 cut(s) 336, 458
BspPI GGATC 5 cut(s) 12, 405, 574, 671, 684
BsrFI RCCGGY 1 cut(s) 200
BsrGI TGTACA 1 cut(s) 660
BsrI ACTGG 1 cut(s) 506
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 4 cut(s) 57, 356, 478, 531
BssMI GATC 4 cut(s) 4, 397, 566, 676
BssT1I CCWWGG 4 cut(s) 57, 356, 478, 531
Bst2UI CCWGG 1 cut(s) 300
BstAUI TGTACA 1 cut(s) 660
BstC8I GCNNGC 3 cut(s) 202, 429, 598
BstDEI CTNAG 1 cut(s) 118
BstDSI CCRYGG 3 cut(s) 57, 356, 478
BstF5I GGATG 2 cut(s) 272, 637
BstKTI GATC 4 cut(s) 7, 400, 569, 679
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 4 cut(s) 4, 397, 566, 676
BstMWI GCNNNNNNNGC 4 cut(s) 140, 210, 343, 465
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 298
BstSFI CTRYAG 2 cut(s) 332, 454
BstSLI GKGCMC 3 cut(s) 158, 433, 602
BstV1I GCAGC 4 cut(s) 324, 346, 446, 468
BstX2I RGATCY 4 cut(s) 4, 397, 566, 676
BstYI RGATCY 4 cut(s) 4, 397, 566, 676
BtgI CCRYGG 3 cut(s) 57, 356, 478
BtsCI GGATG 2 cut(s) 272, 637
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 3 cut(s) 202, 429, 598
Cfr10I RCCGGY 1 cut(s) 200
Csp6I GTAC 4 cut(s) 390, 505, 559, 661
CspCI CAANNNNNGTGG 2 cut(s) 218, 253
CviAII CATG 5 cut(s) 58, 357, 479, 628, 654
CviJI RGCY 9 cut(s) 117, 143, 204, 298, 337, 459, 530, 624, 668
CviKI_1 RGCY 9 cut(s) 117, 143, 204, 298, 337, 459, 530, 624, 668
CviQI GTAC 4 cut(s) 390, 505, 559, 661
DdeI CTNAG 1 cut(s) 118
DpnI GATC 4 cut(s) 6, 399, 568, 678
DpnII GATC 4 cut(s) 4, 397, 566, 676
Eco130I CCWWGG 4 cut(s) 57, 356, 478, 531
Eco24I GRGCYC 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 4 cut(s) 57, 356, 478, 531
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 4 cut(s) 57, 356, 478, 531
FaeI CATG 5 cut(s) 61, 360, 482, 631, 657
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FatI CATG 5 cut(s) 57, 356, 478, 627, 653
FauNDI CATATG 1 cut(s) 130
Fnu4HI GCNGC 6 cut(s) 335, 338, 425, 457, 460, 594
FokI GGATG 2 cut(s) 259, 644
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 6 cut(s) 335, 338, 425, 457, 460, 594
FspBI CTAG 2 cut(s) 95, 694
GluI GCNGC 6 cut(s) 335, 338, 425, 457, 460, 594
GsuI CTGGAG 1 cut(s) 51
HapII CCGG 1 cut(s) 201
Hin1II CATG 5 cut(s) 61, 360, 482, 631, 657
HinfI GANTC 1 cut(s) 107
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 116
Hpy188I TCNGA 3 cut(s) 121, 139, 496
Hpy188III TCNNGA 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 6 cut(s) 334, 346, 382, 456, 468, 551
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 210, 343, 465
HpyF3I CTNAG 1 cut(s) 118
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 5 cut(s) 61, 360, 482, 631, 657
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 4 cut(s) 4, 397, 566, 676
LpnPI CCDG 9 cut(s) 15, 214, 285, 301, 312, 352, 474, 487, 495
Lsp1109I GCAGC 4 cut(s) 324, 346, 446, 468
LweI GCATC 2 cut(s) 16, 172
MaeI CTAG 2 cut(s) 95, 694
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 17
MalI GATC 4 cut(s) 6, 399, 568, 678
MboI GATC 4 cut(s) 4, 397, 566, 676
MboII GAAGA 3 cut(s) 263, 344, 466
MflI RGATCY 4 cut(s) 4, 397, 566, 676
MhlI GDGCHC 4 cut(s) 119, 158, 433, 602
MnlI CCTC 4 cut(s) 276, 388, 529, 557
MroNI GCCGGC 1 cut(s) 200
MseI TTAA 1 cut(s) 171
MspA1I CMGCKG 2 cut(s) 337, 459
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 4 cut(s) 140, 210, 343, 465
NaeI GCCGGC 1 cut(s) 202
NcoI CCATGG 3 cut(s) 57, 356, 478
NdeI CATATG 1 cut(s) 130
NdeII GATC 4 cut(s) 4, 397, 566, 676
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 5 cut(s) 61, 360, 482, 631, 657
NlaIV GGNNCC 1 cut(s) 678
PctI GAATGC 1 cut(s) 62
PdiI GCCGGC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 6 cut(s) 336, 339, 426, 458, 461, 595
PsiI TTATAA 2 cut(s) 404, 573
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 678
PstI CTGCAG 2 cut(s) 336, 458
PsuI RGATCY 4 cut(s) 4, 397, 566, 676
PvuII CAGCTG 2 cut(s) 337, 459
RsaI GTAC 4 cut(s) 391, 506, 560, 662
RsaNI GTAC 4 cut(s) 390, 505, 559, 661
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 6 cut(s) 335, 338, 425, 457, 460, 594
Sau3AI GATC 4 cut(s) 4, 397, 566, 676
ScrFI CCNGG 1 cut(s) 300
SduI GDGCHC 4 cut(s) 119, 158, 433, 602
SetI ASST 7 cut(s) 42, 145, 339, 371, 461, 493, 540
SfaNI GCATC 2 cut(s) 16, 172
SfcI CTRYAG 2 cut(s) 332, 454
SsiI CCGC 2 cut(s) 424, 593
SspMI CTAG 2 cut(s) 95, 694
StyD4I CCNGG 1 cut(s) 298
StyI CCWWGG 4 cut(s) 57, 356, 478, 531
TaiI ACGT 1 cut(s) 42
TaqI TCGA 3 cut(s) 268, 374, 543
TaqII GACCGA 1 cut(s) 540
TatI WGTACW 3 cut(s) 389, 558, 660
TauI GCSGC 2 cut(s) 427, 596
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 1 cut(s) 163
TseI GCWGC 4 cut(s) 334, 337, 456, 459
TspDTI ATGAA 1 cut(s) 642
TspRI CASTG 1 cut(s) 163
XbaI TCTAGA 1 cut(s) 94
XspI CTAG 2 cut(s) 95, 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.