Rmu_co8114132.1_g000001

cellulase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8114132.1
OG0000663
Physical Location & Seq
Reverse (-)
1 .. 579
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8114132.1_g000001.1.cds

Sequence Viewer

Length: 333 bp
atgcgcttggcaaatctatattgttcttcgaaggccaacgctccgggaagttgccgaccatccagcgagtatcttggagaggagactctgcactttccgatggccagcttgaaggagtacgtaaatttgactggaggatactatgatgcaggcgacaacgtgaagttcgtgtggccaatggcatatagtgtgaccttgttgagttggagtctcattgagtaccagcagcagatatcttcagcaaaccagcttgcatacgtccagagagcaatccgctggggcacagacttcataataaaagctcacctttcgcccaccaccttctatactcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

111

Amino Acids

12.57

Weight (kDa)

6.7

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23210 AT1G70710
fragaria_vesca FvH4_4g33940 FvH4_6g41450 FvH4_7g27772 FvH4_7g27773 FvH4_7g27774 FvH4_7g27775
malus_domestica MD00G1036700.v1.1 MD07G1097500.v1.1 MD11G1195000.v1.1 MD16G1021500.v1.1
prunus_persica Prupe.1G331000_v2.0.a1 Prupe.1G331000_v2.0.a1 Prupe.2G121700_v2.0.a1 Prupe.2G278700_v2.0.a1 Prupe.2G278800_v2.0.a1
pyrus_communis pycom01g19480 pycom03g11560 pycom06g08760 pycom16g01920
rosa_chinensis RchiOBHm_Chr1g0374571 RchiOBHm_Chr1g0374581 RchiOBHm_Chr1g0374591 RchiOBHm_Chr1g0374601 RchiOBHm_Chr1g0374611 RchiOBHm_Chr2g0157011 RchiOBHm_Chr4g0443471
rosa_laevigata RLG00000005926 RLG00000026724 RLG00000026725 RLG00000026726 RLG00000026727
rosa_multiflora Rmu_co8114132.1_g000001 Rmu_sc0004947.1_g000005 Rmu_sc0004947.1_g000006 Rmu_sc0004947.1_g000007 Rmu_sc0004947.1_g000008 Rmu_sc0009670.1_g000003 Rmu_sc0034696.1_g000001 Rmu_sc0037664.1_g000001 Rmu_ssc0000408.1_g000014
rosa_roxburghii Rroxscaffold_4G00283360 Rroxscaffold_4G00283370 Rroxscaffold_4G00283380 Rroxscaffold_5G00384020
rosa_rugosa Rorug01G0059600 Rorug01G0384100 Rorug01G0384200 Rorug01G0384200 Rorug02G0457500 Rorug04G0346500 Rorug04G0346500 Rorug07G0215300
rosa_samantha Rh1AG395000 Rh1AG395100 Rh1AG395200 Rh1AG395400 Rh1CG372800 Rh1CG372900 Rh1CG373000 Rh1CG373100 Rh1DG390300 Rh1DG390400 Rh1DG390500 Rh1DG390600 Rh2BG536600 Rh2DG545500 Rh4AG402000 Rh4CG429100 Rh4DG409100
rosa_wichuraiana Rw1G035030 Rw1G035040 Rw1G035050 Rw1G035060 Rw4G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 274
AcoI YGGCCR 2 cut(s) 102, 173
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 2 cut(s) 119, 221
AgsI TTSAA 1 cut(s) 112
AluBI AGCT 3 cut(s) 108, 250, 302
AluI AGCT 3 cut(s) 108, 250, 302
Alw26I GTCTC 2 cut(s) 77, 215
AoxI GGCC 3 cut(s) 33, 102, 173
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 1 cut(s) 124
AspLEI GCGC 1 cut(s) 6
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 296
AsuII TTCGAA 1 cut(s) 29
BaeGI GKGCMC 1 cut(s) 284
BalI TGGCCA 2 cut(s) 104, 175
BbvI GCAGC 1 cut(s) 238
BccI CCATC 2 cut(s) 67, 94
BciVI GTATCC 1 cut(s) 131
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 2 cut(s) 77, 215
BfuI GTATCC 1 cut(s) 131
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 95
BseSI GKGCMC 1 cut(s) 284
BseXI GCAGC 1 cut(s) 238
BseYI CCCAGC 1 cut(s) 276
BsgI GTGCAG 1 cut(s) 74
BshFI GGCC 3 cut(s) 35, 104, 175
BsiSI CCGG 1 cut(s) 44
BsmAI GTCTC 2 cut(s) 77, 215
BsnI GGCC 3 cut(s) 35, 104, 175
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 284
BspACI CCGC 1 cut(s) 274
BspANI GGCC 3 cut(s) 35, 104, 175
BspT104I TTCGAA 1 cut(s) 29
BsrI ACTGG 1 cut(s) 136
BstBAI YACGTR 1 cut(s) 121
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 3 cut(s) 106, 151, 252
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 59
BstHHI GCGC 1 cut(s) 6
BstMAI GTCTC 2 cut(s) 77, 215
BstSCI CCNGG 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 284
BstSNI TACGTA 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 238
BsuI GTATCC 1 cut(s) 131
BsuRI GGCC 3 cut(s) 35, 104, 175
BtsCI GGATG 1 cut(s) 59
Cac8I GCNNGC 3 cut(s) 106, 151, 252
CfoI GCGC 1 cut(s) 6
Csp6I GTAC 2 cut(s) 118, 220
CviJI RGCY 6 cut(s) 35, 104, 108, 175, 250, 302
CviKI_1 RGCY 6 cut(s) 35, 104, 108, 175, 250, 302
CviQI GTAC 2 cut(s) 118, 220
DdeI CTNAG 1 cut(s) 330
EaeI YGGCCR 2 cut(s) 102, 173
Eco105I TACGTA 1 cut(s) 121
Eco32I GATATC 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 222
EcoRV GATATC 1 cut(s) 234
FaiI YATR 7 cut(s) 19, 144, 184, 186, 256, 293, 327
FalI AAGNNNNNCTT 2 cut(s) 291, 323
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 227
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 227
GsaI CCCAGC 1 cut(s) 280
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 3 cut(s) 35, 104, 175
HapII CCGG 1 cut(s) 44
HhaI GCGC 1 cut(s) 6
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 2 cut(s) 85, 208
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 296
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 1 cut(s) 262
HpyAV CCTTC 3 cut(s) 25, 106, 331
HpyCH4IV ACGT 3 cut(s) 120, 159, 258
HpyCH4V TGCA 3 cut(s) 91, 149, 254
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 3 cut(s) 120, 159, 258
HspAI GCGC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 9 cut(s) 57, 76, 117, 118, 135, 236, 260, 262, 275
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 136
MaeII ACGT 3 cut(s) 120, 159, 258
MaeIII GTNAC 1 cut(s) 190
MboII GAAGA 2 cut(s) 18, 228
MhlI GDGCHC 1 cut(s) 284
MlsI TGGCCA 2 cut(s) 104, 175
MluCI AATT 1 cut(s) 124
MluNI TGGCCA 2 cut(s) 104, 175
MlyI GAGTC 2 cut(s) 79, 217
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 2 cut(s) 73, 128
Mox20I TGGCCA 2 cut(s) 104, 175
MscI TGGCCA 2 cut(s) 104, 175
Msp20I TGGCCA 2 cut(s) 104, 175
MspA1I CMGCKG 1 cut(s) 276
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 45
NciI CCSGG 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 190
NspV TTCGAA 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfoI TCCNGGA 1 cut(s) 43
PkrI GCNGC 1 cut(s) 228
PleI GAGTC 2 cut(s) 79, 216
PpsI GAGTC 2 cut(s) 79, 216
Ppu21I YACGTR 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 276
RsaI GTAC 2 cut(s) 119, 221
RsaNI GTAC 2 cut(s) 118, 220
SatI GCNGC 1 cut(s) 227
SchI GAGTC 2 cut(s) 79, 217
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 284
SetI ASST 9 cut(s) 110, 123, 162, 197, 252, 261, 304, 309, 323
SfaNI GCATC 1 cut(s) 136
SfuI TTCGAA 1 cut(s) 29
SnaBI TACGTA 1 cut(s) 121
Sse9I AATT 1 cut(s) 124
SsiI CCGC 1 cut(s) 274
StyD4I CCNGG 1 cut(s) 43
TaiI ACGT 3 cut(s) 123, 162, 261
TaqI TCGA 1 cut(s) 29
TasI AATT 1 cut(s) 124
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 280
XapI RAATTY 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.