RchiOBHm_Chr1g0374601

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000663
Physical Location & Seq
Forward (+)
62376603 .. 62377285
683 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59840

Sequence Viewer

Length: 378 bp
ATGTCTAGTAGTAATATTAAACAACCATTAAGGTTGTTGATGGTAGAAGAAGGGATGTTGGCAATGGCAACACTAGTAAGCTCTGCGGTTCAACATAACTACGCGGATGCTTTGTCAAAAAGTATTTTGTTTTTTGAAGGGCAGAGATCGGGCAGGTTGCCGCATACACAACGAATGATATGGAGGAAAGATTCGGCTCTATGTGATGGCCTAGATGTTAAAAGGGATCTGACCGGGGGTTACTATGATGCGGGTGACAATGTGAAATTTAACTTTCCAATGGCTTTCACCACAACAATGTTGTCATGGAGTGTTATAGAATTTGGAAAATCAATGGGCTCAGAACTTCCACATGCCTTGGAACTTGGAAGCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

125

Amino Acids

13.89

Weight (kDa)

6.4

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 34 - 120 1.4e-33 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23210 AT1G70710
fragaria_vesca FvH4_4g33940 FvH4_6g41450 FvH4_7g27772 FvH4_7g27773 FvH4_7g27774 FvH4_7g27775
malus_domestica MD00G1036700.v1.1 MD07G1097500.v1.1 MD11G1195000.v1.1 MD16G1021500.v1.1
prunus_persica Prupe.1G331000_v2.0.a1 Prupe.1G331000_v2.0.a1 Prupe.2G121700_v2.0.a1 Prupe.2G278700_v2.0.a1 Prupe.2G278800_v2.0.a1
pyrus_communis pycom01g19480 pycom03g11560 pycom06g08760 pycom16g01920
rosa_chinensis RchiOBHm_Chr1g0374571 RchiOBHm_Chr1g0374581 RchiOBHm_Chr1g0374591 RchiOBHm_Chr1g0374601 RchiOBHm_Chr1g0374611 RchiOBHm_Chr2g0157011 RchiOBHm_Chr4g0443471
rosa_laevigata RLG00000005926 RLG00000026724 RLG00000026725 RLG00000026726 RLG00000026727
rosa_multiflora Rmu_co8114132.1_g000001 Rmu_sc0004947.1_g000005 Rmu_sc0004947.1_g000006 Rmu_sc0004947.1_g000007 Rmu_sc0004947.1_g000008 Rmu_sc0009670.1_g000003 Rmu_sc0034696.1_g000001 Rmu_sc0037664.1_g000001 Rmu_ssc0000408.1_g000014
rosa_roxburghii Rroxscaffold_4G00283360 Rroxscaffold_4G00283370 Rroxscaffold_4G00283380 Rroxscaffold_5G00384020
rosa_rugosa Rorug01G0059600 Rorug01G0384100 Rorug01G0384200 Rorug01G0384200 Rorug02G0457500 Rorug04G0346500 Rorug04G0346500 Rorug07G0215300
rosa_samantha Rh1AG395000 Rh1AG395100 Rh1AG395200 Rh1AG395400 Rh1CG372800 Rh1CG372900 Rh1CG373000 Rh1CG373100 Rh1DG390300 Rh1DG390400 Rh1DG390500 Rh1DG390600 Rh2BG536600 Rh2DG545500 Rh4AG402000 Rh4CG429100 Rh4DG409100
rosa_wichuraiana Rw1G035030 Rw1G035040 Rw1G035050 Rw1G035060 Rw4G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 144
AccII CGCG 1 cut(s) 104
AciI CCGC 4 cut(s) 86, 104, 161, 251
AclWI GGATC 1 cut(s) 234
AcsI RAATTY 2 cut(s) 266, 320
AgsI TTSAA 2 cut(s) 92, 137
AhlI ACTAGT 1 cut(s) 73
AluBI AGCT 1 cut(s) 81
AluI AGCT 1 cut(s) 81
AlwI GGATC 1 cut(s) 234
AoxI GGCC 1 cut(s) 208
ApoI RAATTY 2 cut(s) 266, 320
AsuC2I CCSGG 1 cut(s) 235
AsuHPI GGTGA 2 cut(s) 266, 280
BanII GRGCYC 1 cut(s) 341
BccI CCATC 2 cut(s) 34, 200
BcnI CCSGG 1 cut(s) 235
BcuI ACTAGT 1 cut(s) 73
BfaI CTAG 3 cut(s) 6, 74, 212
BfuAI ACCTGC 1 cut(s) 144
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 2 cut(s) 97, 238
BpuMI CCSGG 1 cut(s) 235
BsaJI CCNNGG 2 cut(s) 234, 357
Bse3DI GCAATG 1 cut(s) 69
BseDI CCNNGG 2 cut(s) 234, 357
BseGI GGATG 2 cut(s) 60, 112
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 354
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 234
BsnI GGCC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 341
Bsp143I GATC 2 cut(s) 146, 226
BspACI CCGC 4 cut(s) 86, 104, 161, 251
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 353
BspFNI CGCG 1 cut(s) 104
BspMI ACCTGC 1 cut(s) 144
BspPI GGATC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 69
BssECI CCNNGG 2 cut(s) 234, 357
BssMI GATC 2 cut(s) 146, 226
BssT1I CCWWGG 1 cut(s) 357
BstDEI CTNAG 1 cut(s) 340
BstF5I GGATG 2 cut(s) 60, 112
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 2 cut(s) 149, 229
BstMBI GATC 2 cut(s) 146, 226
BstNSI RCATGY 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 233
BstUI CGCG 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 1 cut(s) 210
BtsCI GGATG 2 cut(s) 60, 112
BveI ACCTGC 1 cut(s) 144
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 2 cut(s) 306, 353
CviJI RGCY 6 cut(s) 81, 197, 210, 284, 339, 372
CviKI_1 RGCY 6 cut(s) 81, 197, 210, 284, 339, 372
DdeI CTNAG 1 cut(s) 340
DpnI GATC 2 cut(s) 148, 228
DpnII GATC 2 cut(s) 146, 226
Eco130I CCWWGG 1 cut(s) 357
Eco24I GRGCYC 1 cut(s) 341
EcoT14I CCWWGG 1 cut(s) 357
EcoT38I GRGCYC 1 cut(s) 341
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 2 cut(s) 309, 356
FaiI YATR 8 cut(s) 96, 165, 181, 202, 246, 307, 317, 354
FatI CATG 2 cut(s) 305, 352
FauI CCCGC 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 2 cut(s) 67, 119
FriOI GRGCYC 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 3 cut(s) 6, 74, 212
GluI GCNGC 1 cut(s) 161
HaeIII GGCC 1 cut(s) 210
HapII CCGG 1 cut(s) 234
Hin1II CATG 2 cut(s) 309, 356
HinfI GANTC 1 cut(s) 191
HpaII CCGG 1 cut(s) 234
HphI GGTGA 2 cut(s) 266, 280
Hpy188I TCNGA 2 cut(s) 231, 343
HpyAV CCTTC 2 cut(s) 44, 131
HpyF3I CTNAG 1 cut(s) 340
Hsp92II CATG 2 cut(s) 309, 356
Kzo9I GATC 2 cut(s) 146, 226
LpnPI CCDG 2 cut(s) 139, 247
LweI GCATC 2 cut(s) 97, 238
MaeI CTAG 3 cut(s) 6, 74, 212
MaeIII GTNAC 2 cut(s) 239, 254
MalI GATC 2 cut(s) 148, 228
MboI GATC 2 cut(s) 146, 226
MboII GAAGA 1 cut(s) 59
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 341
MluCI AATT 2 cut(s) 266, 320
MnlI CCTC 1 cut(s) 177
MseI TTAA 4 cut(s) 18, 29, 219, 270
MslI CAYNNNNRTG 1 cut(s) 296
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 235
MvnI CGCG 1 cut(s) 104
NciI CCSGG 1 cut(s) 235
NdeII GATC 2 cut(s) 146, 226
NlaIII CATG 2 cut(s) 309, 356
NmuCI GTSAC 1 cut(s) 254
NspI RCATGY 1 cut(s) 356
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 1 cut(s) 162
PsuI RGATCY 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 4 cut(s) 18, 29, 219, 270
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 2 cut(s) 146, 226
ScrFI CCNGG 1 cut(s) 235
SduI GDGCHC 1 cut(s) 341
SetI ASST 3 cut(s) 35, 83, 158
SfaNI GCATC 2 cut(s) 97, 238
SmiMI CAYNNNNRTG 1 cut(s) 296
SpeI ACTAGT 1 cut(s) 73
Sse9I AATT 2 cut(s) 266, 320
SsiI CCGC 4 cut(s) 86, 104, 161, 251
SspI AATATT 1 cut(s) 16
SspMI CTAG 3 cut(s) 6, 74, 212
StyD4I CCNGG 1 cut(s) 233
StyI CCWWGG 1 cut(s) 357
TasI AATT 2 cut(s) 266, 320
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 4 cut(s) 18, 29, 219, 270
Tru9I TTAA 4 cut(s) 18, 29, 219, 270
TseFI GTSAC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 254
XapI RAATTY 2 cut(s) 266, 320
XceI RCATGY 1 cut(s) 356
XspI CTAG 3 cut(s) 6, 74, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.