Rh1CG373000

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000663
Physical Location & Seq
Forward (+)
64248722 .. 64250437
1716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG373000.1

Sequence Viewer

Length: 1065 bp
ATGGATACCCCAAGAACCACATATGTAGTAACTAAAGAAAAACCAGGTTCAGAAGTTTCTGCGGAGATCGCAGCCGCGCTTGCAGCTTCCTCCATAGTGTTTAACCAATCAGACAAAGCGTACTCTGACTCGCTTCTTAAGCAAGCCATCCAAGTGTTTCAATTTGGAGATCAGTATCAGGGATCTTACAATACTAGTATTGGCGACGGAGCCTGCCCATTTTACTGCGATTTTAGTGGCTACATGGATGAATTGATTTGGGGAGCTTCATGGCTATACAAGGCAACAAAGGAACCAAATTATTGGAAATATGTCAAAGACCACATACACAATCTGGAGTCGTCAAACACTGTAGTGAGAAATGTGGATGGTTCTCCTGTTCCATTTGTTGGTGGTGACATTACTGAATTCGGATGGGATAGCAAGCATGCCGGCATCAACATACTTGTTTCTCAATGGGTTATGACTGATCCAGCCAATTCCAATCCGTTCATTCCCAAAGCTGACCAGCTTATATGCTCCATTCTGCCTGAATCACCAGCTCCCAAATCAGTCACGTATTCACCAGGTGGACTCTTGTTCAAACCTGGATCTTGTAACCTGCAACACACGACATCCTTATCATTTCTTCTTATAGTTTATGCTCGATACCTGAAAGGTGCCAACAGAACCATAAACTGTGGCAATAATGTTGTTCTTGGTCCAGCTCATTTGATAAATTTCACAAGAAAACAGGTTGATTATATACTCGGAAGCAACCCATTGGGGATGTCTTATATGGTGGGATATGGTACACAATTTCCTCAAAGAATACATCATCGTGCTTCTGTGGTACCTTCCATGGATAAGCATCCACAGCACATGAGGTGCCATGACGGTGATCAGTATTTCAAAAGCCAAGCTCCGAATCAAAACTTGCTAATAGGAGCAGTTGTCGGGGGACCAGCCGAGAATGATACATTTGAAGATTCTCGATATGATCCTGGACAATCAGAGCCAGTTACATACAACAATGCCCCTTTTGTTGGTGTTTTGGCATTCTTTAAGGCTCTATATAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

354

Amino Acids

39.02

Weight (kDa)

6.04

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 1 - 345 9.7e-89 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23210 AT1G70710
fragaria_vesca FvH4_4g33940 FvH4_6g41450 FvH4_7g27772 FvH4_7g27773 FvH4_7g27774 FvH4_7g27775
malus_domestica MD00G1036700.v1.1 MD07G1097500.v1.1 MD11G1195000.v1.1 MD16G1021500.v1.1
prunus_persica Prupe.1G331000_v2.0.a1 Prupe.1G331000_v2.0.a1 Prupe.2G121700_v2.0.a1 Prupe.2G278700_v2.0.a1 Prupe.2G278800_v2.0.a1
pyrus_communis pycom01g19480 pycom03g11560 pycom06g08760 pycom16g01920
rosa_chinensis RchiOBHm_Chr1g0374571 RchiOBHm_Chr1g0374581 RchiOBHm_Chr1g0374591 RchiOBHm_Chr1g0374601 RchiOBHm_Chr1g0374611 RchiOBHm_Chr2g0157011 RchiOBHm_Chr4g0443471
rosa_laevigata RLG00000005926 RLG00000026724 RLG00000026725 RLG00000026726 RLG00000026727
rosa_multiflora Rmu_co8114132.1_g000001 Rmu_sc0004947.1_g000005 Rmu_sc0004947.1_g000006 Rmu_sc0004947.1_g000007 Rmu_sc0004947.1_g000008 Rmu_sc0009670.1_g000003 Rmu_sc0034696.1_g000001 Rmu_sc0037664.1_g000001 Rmu_ssc0000408.1_g000014
rosa_roxburghii Rroxscaffold_4G00283360 Rroxscaffold_4G00283370 Rroxscaffold_4G00283380 Rroxscaffold_5G00384020
rosa_rugosa Rorug01G0059600 Rorug01G0384100 Rorug01G0384200 Rorug01G0384200 Rorug02G0457500 Rorug04G0346500 Rorug04G0346500 Rorug07G0215300
rosa_samantha Rh1AG395000 Rh1AG395100 Rh1AG395200 Rh1AG395400 Rh1CG372800 Rh1CG372900 Rh1CG373000 Rh1CG373100 Rh1DG390300 Rh1DG390400 Rh1DG390500 Rh1DG390600 Rh2BG536600 Rh2DG545500 Rh4AG402000 Rh4CG429100 Rh4DG409100
rosa_wichuraiana Rw1G035030 Rw1G035040 Rw1G035050 Rw1G035060 Rw4G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 609
Acc65I GGTACC 1 cut(s) 832
AccB1I GGYRCC 3 cut(s) 659, 832, 867
AccB7I CCANNNNNTGG 1 cut(s) 389
AccII CGCG 1 cut(s) 77
AciI CCGC 2 cut(s) 62, 75
AclWI GGATC 4 cut(s) 190, 464, 598, 974
AcsI RAATTY 2 cut(s) 407, 718
AdeI CACNNNGTG 1 cut(s) 569
AfaI GTAC 3 cut(s) 122, 793, 834
AfiI CCNNNNNNNGG 2 cut(s) 389, 1025
AflII CTTAAG 1 cut(s) 137
AgsI TTSAA 4 cut(s) 161, 583, 892, 965
AhlI ACTAGT 1 cut(s) 194
AjnI CCWGG 4 cut(s) 43, 565, 586, 982
AleI CACNNNNGTG 1 cut(s) 353
AluBI AGCT 7 cut(s) 86, 266, 503, 511, 542, 707, 902
AluI AGCT 7 cut(s) 86, 266, 503, 511, 542, 707, 902
AlwI GGATC 4 cut(s) 190, 464, 598, 974
ApeKI GCWGC 2 cut(s) 71, 83
ApoI RAATTY 2 cut(s) 407, 718
Asp718I GGTACC 1 cut(s) 832
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 2 cut(s) 701, 941
AsuHPI GGTGA 4 cut(s) 407, 528, 555, 890
AvaII GGWCC 2 cut(s) 701, 941
BanI GGYRCC 3 cut(s) 659, 832, 867
BbvI GCAGC 2 cut(s) 83, 95
BccI CCATC 3 cut(s) 155, 362, 408
BciT130I CCWGG 4 cut(s) 45, 567, 588, 984
BclI TGATCA 1 cut(s) 880
BcuI ACTAGT 1 cut(s) 194
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 351
BfrI CTTAAG 1 cut(s) 137
BfuAI ACCTGC 1 cut(s) 609
BisI GCNGC 3 cut(s) 72, 75, 84
BlsI GCNGC 3 cut(s) 73, 76, 85
Bme1390I CCNGG 4 cut(s) 45, 567, 588, 984
Bme18I GGWCC 2 cut(s) 701, 941
BmgT120I GGNCC 2 cut(s) 701, 941
BmiI GGNNCC 6 cut(s) 211, 294, 661, 834, 869, 942
BmrFI CCNGG 4 cut(s) 45, 567, 588, 984
BmsI GCATC 2 cut(s) 444, 859
BpmI CTGGAG 1 cut(s) 356
BsaAI YACGTR 1 cut(s) 558
BsaBI GATNNNNATC 2 cut(s) 174, 849
BsaJI CCNNGG 1 cut(s) 840
BsaXI ACNNNNNCTCC 2 cut(s) 918, 948
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 1025
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 1 cut(s) 998
Bse8I GATNNNNATC 2 cut(s) 174, 849
BseBI CCWGG 4 cut(s) 45, 567, 588, 984
BseDI CCNNGG 1 cut(s) 840
BseGI GGATG 7 cut(s) 147, 253, 373, 419, 614, 774, 850
BseJI GATNNNNATC 2 cut(s) 174, 849
BseLI CCNNNNNNNGG 2 cut(s) 389, 1025
BseNI ACTGG 1 cut(s) 998
BseXI GCAGC 2 cut(s) 83, 95
Bsh1236I CGCG 1 cut(s) 77
BshNI GGYRCC 3 cut(s) 659, 832, 867
BsiSI CCGG 1 cut(s) 432
BslFI GGGAC 1 cut(s) 954
BslI CCNNNNNNNGG 2 cut(s) 389, 1025
BsmFI GGGAC 1 cut(s) 954
BsmI GAATGC 1 cut(s) 1037
Bsp143I GATC 7 cut(s) 66, 169, 182, 469, 590, 880, 979
Bsp19I CCATGG 1 cut(s) 840
BspACI CCGC 2 cut(s) 62, 75
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 6 cut(s) 211, 294, 661, 834, 869, 942
BspMI ACCTGC 1 cut(s) 609
BspPI GGATC 4 cut(s) 190, 464, 598, 974
BspT107I GGYRCC 3 cut(s) 659, 832, 867
BspTI CTTAAG 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 431
BsrI ACTGG 1 cut(s) 998
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 1 cut(s) 840
BssMI GATC 7 cut(s) 66, 169, 182, 469, 590, 880, 979
BssT1I CCWWGG 1 cut(s) 840
Bst2UI CCWGG 4 cut(s) 45, 567, 588, 984
Bst4CI ACNGT 3 cut(s) 352, 680, 878
BstAFI CTTAAG 1 cut(s) 137
BstBAI YACGTR 1 cut(s) 558
BstC8I GCNNGC 6 cut(s) 81, 144, 214, 425, 429, 433
BstDSI CCRYGG 1 cut(s) 840
BstF5I GGATG 7 cut(s) 147, 253, 373, 419, 614, 774, 850
BstFNI CGCG 1 cut(s) 77
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 7 cut(s) 69, 172, 185, 472, 593, 883, 982
BstMBI GATC 7 cut(s) 66, 169, 182, 469, 590, 880, 979
BstMWI GCNNNNNNNGC 5 cut(s) 68, 80, 83, 139, 856
BstNI CCWGG 4 cut(s) 45, 567, 588, 984
BstNSI RCATGY 1 cut(s) 431
BstSCI CCNGG 4 cut(s) 43, 565, 586, 982
BstSFI CTRYAG 1 cut(s) 351
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 83, 95
BstX2I RGATCY 2 cut(s) 182, 590
BstXI CCANNNNNNTGG 1 cut(s) 303
BstYI RGATCY 2 cut(s) 182, 590
BtgI CCRYGG 1 cut(s) 840
BtsCI GGATG 7 cut(s) 147, 253, 373, 419, 614, 774, 850
BtsIMutI CAGTG 1 cut(s) 348
BveI ACCTGC 1 cut(s) 609
Cac8I GCNNGC 6 cut(s) 81, 144, 214, 425, 429, 433
CfoI GCGC 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 2 cut(s) 701, 941
CsiI ACCWGGT 2 cut(s) 43, 565
Csp6I GTAC 3 cut(s) 121, 792, 833
CviAII CATG 6 cut(s) 244, 270, 428, 841, 862, 872
CviQI GTAC 3 cut(s) 121, 792, 833
DpnI GATC 7 cut(s) 68, 171, 184, 471, 592, 882, 981
DpnII GATC 7 cut(s) 66, 169, 182, 469, 590, 880, 979
DraIII CACNNNGTG 1 cut(s) 569
Eco130I CCWWGG 1 cut(s) 840
Eco47I GGWCC 2 cut(s) 701, 941
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 4 cut(s) 43, 565, 586, 982
EcoT14I CCWWGG 1 cut(s) 840
ErhI CCWWGG 1 cut(s) 840
FaeI CATG 6 cut(s) 247, 273, 431, 844, 865, 875
FaqI GGGAC 1 cut(s) 954
FatI CATG 6 cut(s) 243, 269, 427, 840, 861, 871
FauNDI CATATG 1 cut(s) 22
FbaI TGATCA 1 cut(s) 880
Fnu4HI GCNGC 3 cut(s) 72, 75, 84
FokI GGATG 7 cut(s) 134, 260, 380, 426, 601, 781, 837
Fsp4HI GCNGC 3 cut(s) 72, 75, 84
FspBI CTAG 1 cut(s) 195
GlaI GCGC 1 cut(s) 78
GluI GCNGC 3 cut(s) 72, 75, 84
GsuI CTGGAG 1 cut(s) 356
HapII CCGG 1 cut(s) 432
HhaI GCGC 1 cut(s) 79
Hin1II CATG 6 cut(s) 247, 273, 431, 844, 865, 875
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HinfI GANTC 6 cut(s) 128, 338, 533, 573, 907, 968
HpaII CCGG 1 cut(s) 432
HphI GGTGA 4 cut(s) 407, 528, 555, 890
Hpy166II GTNNAC 2 cut(s) 572, 794
Hpy188I TCNGA 7 cut(s) 52, 112, 127, 413, 752, 906, 994
Hpy188III TCNNGA 2 cut(s) 335, 972
Hpy8I GTNNAC 2 cut(s) 572, 794
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 846
HpyCH4III ACNGT 3 cut(s) 352, 680, 878
HpyCH4IV ACGT 1 cut(s) 557
HpyCH4V TGCA 2 cut(s) 83, 604
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 80, 83, 139, 856
HpySE526I ACGT 1 cut(s) 557
Hsp92II CATG 6 cut(s) 247, 273, 431, 844, 865, 875
HspAI GCGC 1 cut(s) 77
KpnI GGTACC 1 cut(s) 836
KroI GCCGGC 1 cut(s) 431
KroNI GCCGGC 1 cut(s) 433
Ksp22I TGATCA 1 cut(s) 880
Kzo9I GATC 7 cut(s) 66, 169, 182, 469, 590, 880, 979
LmnI GCTCC 6 cut(s) 209, 263, 524, 547, 907, 926
Lsp1109I GCAGC 2 cut(s) 83, 95
LweI GCATC 2 cut(s) 444, 859
MabI ACCWGGT 2 cut(s) 43, 565
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 557
MaeIII GTNAC 5 cut(s) 28, 395, 553, 596, 1000
MalI GATC 7 cut(s) 68, 171, 184, 471, 592, 882, 981
MboI GATC 7 cut(s) 66, 169, 182, 469, 590, 880, 979
MboII GAAGA 2 cut(s) 620, 977
MflI RGATCY 2 cut(s) 182, 590
MluCI AATT 8 cut(s) 161, 251, 298, 407, 478, 718, 797, 1057
MlyI GAGTC 3 cut(s) 122, 347, 567
MnlI CCTC 3 cut(s) 100, 813, 858
MroNI GCCGGC 1 cut(s) 431
MseI TTAA 3 cut(s) 102, 138, 1044
MslI CAYNNNNRTG 4 cut(s) 152, 353, 819, 876
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 1 cut(s) 432
MspR9I CCNGG 4 cut(s) 45, 567, 588, 984
Mva1269I GAATGC 1 cut(s) 1037
MvaI CCWGG 4 cut(s) 45, 567, 588, 984
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 5 cut(s) 68, 80, 83, 139, 856
NaeI GCCGGC 1 cut(s) 433
NcoI CCATGG 1 cut(s) 840
NdeI CATATG 1 cut(s) 22
NdeII GATC 7 cut(s) 66, 169, 182, 469, 590, 880, 979
NgoMIV GCCGGC 1 cut(s) 431
NlaIII CATG 6 cut(s) 247, 273, 431, 844, 865, 875
NlaIV GGNNCC 6 cut(s) 211, 294, 661, 834, 869, 942
NmeAIII GCCGAG 1 cut(s) 973
NmuCI GTSAC 2 cut(s) 395, 553
NspI RCATGY 1 cut(s) 431
OliI CACNNNNGTG 1 cut(s) 353
PaeI GCATGC 1 cut(s) 431
PctI GAATGC 1 cut(s) 1037
PdiI GCCGGC 1 cut(s) 433
PfeI GAWTC 3 cut(s) 533, 907, 968
PflMI CCANNNNNTGG 1 cut(s) 389
PfoI TCCNGGA 1 cut(s) 982
PkrI GCNGC 3 cut(s) 73, 76, 85
PleI GAGTC 3 cut(s) 122, 346, 567
PpsI GAGTC 3 cut(s) 122, 346, 567
Ppu21I YACGTR 1 cut(s) 558
Psp6I CCWGG 4 cut(s) 43, 565, 586, 982
PspGI CCWGG 4 cut(s) 43, 565, 586, 982
PspN4I GGNNCC 6 cut(s) 211, 294, 661, 834, 869, 942
PspPI GGNCC 2 cut(s) 701, 941
PsuI RGATCY 2 cut(s) 182, 590
RsaI GTAC 3 cut(s) 122, 793, 834
RsaNI GTAC 3 cut(s) 121, 792, 833
RseI CAYNNNNRTG 4 cut(s) 152, 353, 819, 876
SaqAI TTAA 3 cut(s) 102, 138, 1044
SatI GCNGC 3 cut(s) 72, 75, 84
Sau3AI GATC 7 cut(s) 66, 169, 182, 469, 590, 880, 979
Sau96I GGNCC 2 cut(s) 701, 941
SchI GAGTC 3 cut(s) 122, 347, 567
ScrFI CCNGG 4 cut(s) 45, 567, 588, 984
SexAI ACCWGGT 2 cut(s) 43, 565
SfaNI GCATC 2 cut(s) 444, 859
SfcI CTRYAG 1 cut(s) 351
SinI GGWCC 2 cut(s) 701, 941
SmiMI CAYNNNNRTG 4 cut(s) 152, 353, 819, 876
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SpeI ACTAGT 1 cut(s) 194
SphI GCATGC 1 cut(s) 431
Sse9I AATT 8 cut(s) 161, 251, 298, 407, 478, 718, 797, 1057
SsiI CCGC 2 cut(s) 62, 75
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 4 cut(s) 43, 565, 586, 982
StyI CCWWGG 1 cut(s) 840
TaaI ACNGT 3 cut(s) 352, 680, 878
TaiI ACGT 1 cut(s) 560
TaqI TCGA 2 cut(s) 646, 973
TasI AATT 8 cut(s) 161, 251, 298, 407, 478, 718, 797, 1057
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 3 cut(s) 533, 907, 968
Tru1I TTAA 3 cut(s) 102, 138, 1044
Tru9I TTAA 3 cut(s) 102, 138, 1044
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 2 cut(s) 395, 553
TseI GCWGC 2 cut(s) 71, 83
Tsp45I GTSAC 2 cut(s) 395, 553
TspDTI ATGAA 3 cut(s) 258, 264, 481
TspGWI ACGGA 2 cut(s) 222, 477
TspRI CASTG 1 cut(s) 355
Van91I CCANNNNNTGG 1 cut(s) 389
Vha464I CTTAAG 1 cut(s) 137
VpaK11BI GGWCC 2 cut(s) 701, 941
XapI RAATTY 2 cut(s) 407, 718
XceI RCATGY 1 cut(s) 431
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.