RLG00000026725

Endoglucanase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
5337531 .. 5340728
3198 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026725

Sequence Viewer

Length: 1530 bp
ATGTGTACCAATTTCCTTCTGTTAAGGCTGTTGATAGCAGCAGGGTTGTTGGCAATGGCAACCGCCGCAAAAGTGACTCCACATAACTACGCAGATGCTTTGTCGAAGTCCATTTTGTTTTTTGAAGGCCAGAGATCTGGCAAGTTACCGAATTCTCAACGAATGAATTGGAGGAAAGATTCTGCCCTACATGATGGCAGCGATGTTCATAGGGATCTGGTGGGAGGTTACTATGATGCTGGTGACAATGTGAAGTTCAACTTTCCCATGGCCTTCACAACAACATTGTTGTCATGGAGCGTTCTAGAGTTTGGAGATTTGATGGGATCTGAACTTCAACATGCTTTGGAAGCTATAAGATGGGCAACTGATTATTTTCTTAAAGCCACAAATGATCCCGGTTCGGTAGTTGGCGTAGTAGGCGACCCCAACGGAGATCATGCTTGTTGGCAGAGGCCTGAAGACATGGATACCCCAAGAACCACATATGTAGTAACTAAAGAAAAACCAGGTTCAGAAGTTTCTGCGGAGATCGCAGCCGCGCTTGCAGCTTCCTCCATAGTGTTTAACCAATCAGACAAAGCCTACTCTGACTCGCTTCTTAAGAGAGCCATCCAAGTGTTTCAATTTGCAGATCAGTATCAGGGATCTTACAATACTAGTATTGGCGACGGAGCCTGCCCATTTTACTGCGATTTTAGTGGCTACATGGATGAATTGATTTGGGGAGCTTCATGGCTATACAAGGCAACAAAGGCACCAAATTACTGGGAATATGTCAAAGACCACATACACAATCTGGAGTCGTCAAACACTGTAGTGAGAAATGTGGATGGTTCTCCTGTTCCATTTGTTGGTGGTGACATTACTGAATTCGGATGGGATAGCAAGCATGCCGGCATCAACATACTTGTTTCTCAATGGGTTATGACTGATCCAGCCAATTCCAATCCGTTCATTCCCAAAGCTGACCAGCTTATATGCTCCATTCTGCCTGAATCACCAGCTCCCAAATCAGTTACGTATTCACCAGGTGGACTCTTGTTCAAACCTGGATCTTGTAACCTGCAACACACGATATCCTTATCATTTCTTCTTATAGTTTATGCTCGATACGTGAAAGGTGCCAACAGAACCATAAACTGTGGCAATAATGTTGTTCTTGGTCCAGCTCATTTGATAGATTTCACAAGAAAACAGGTTGATTATATACTCGGAAGCAACCCTTTGGGGATGTCTTACATGGTGGGATATGGTACAAAATTTCCTCAAAGAATACATCATCGTGCTTCTGTGGTACCTTCCATGGATAAGCATCCACAGCACATGAAGTGCCATGACGGCGATCAGTATTTCAAAAGCCAAGCTCCGAATCAAAACTTGCTAATAGGAGCAGTTGTCGGGGGACCAGCGGAGAATGATACATTCGAAGATTCTCGATATGATCCTGGACAATCAGAGCCAGTTACATACAACAGCGCCCCTTTTGTTGGTGTTTTGGCATTCTTTAAGGCTCTATATAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

510

Amino Acids

56.03

Weight (kDa)

5.82

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 30 - 500 1.2e-148 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000663)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1074
Acc65I GGTACC 1 cut(s) 1297
AccB1I GGYRCC 3 cut(s) 757, 1124, 1297
AccB7I CCANNNNNTGG 1 cut(s) 854
AccII CGCG 1 cut(s) 542
AciI CCGC 5 cut(s) 63, 66, 527, 540, 1412
AclWI GGATC 7 cut(s) 222, 334, 389, 655, 929, 1063, 1439
AcsI RAATTY 3 cut(s) 151, 872, 1262
AcuI CTGAAG 1 cut(s) 480
AdeI CACNNNGTG 1 cut(s) 1034
AfaI GTAC 3 cut(s) 7, 1258, 1299
AfiI CCNNNNNNNGG 2 cut(s) 854, 1490
AflII CTTAAG 1 cut(s) 602
AgsI TTSAA 6 cut(s) 125, 259, 338, 626, 1048, 1357
AhlI ACTAGT 1 cut(s) 659
AjnI CCWGG 4 cut(s) 508, 1030, 1051, 1447
AleI CACNNNNGTG 1 cut(s) 818
AluBI AGCT 8 cut(s) 353, 551, 731, 968, 976, 1007, 1172, 1367
AluI AGCT 8 cut(s) 353, 551, 731, 968, 976, 1007, 1172, 1367
AlwI GGATC 7 cut(s) 222, 334, 389, 655, 929, 1063, 1439
AoxI GGCC 3 cut(s) 127, 270, 455
ApeKI GCWGC 4 cut(s) 38, 198, 536, 548
ApoI RAATTY 3 cut(s) 151, 872, 1262
Asp718I GGTACC 1 cut(s) 1297
AspLEI GCGC 2 cut(s) 544, 1481
AspS9I GGNCC 2 cut(s) 1166, 1406
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 4 cut(s) 254, 872, 993, 1020
AsuII TTCGAA 1 cut(s) 1428
AvaII GGWCC 2 cut(s) 1166, 1406
BanI GGYRCC 3 cut(s) 757, 1124, 1297
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 4 cut(s) 50, 210, 548, 560
BccI CCATC 6 cut(s) 188, 316, 354, 620, 827, 873
BceAI ACGGC 1 cut(s) 1357
BciT130I CCWGG 4 cut(s) 510, 1032, 1053, 1449
BciVI GTATCC 1 cut(s) 463
BcnI CCSGG 1 cut(s) 399
BcuI ACTAGT 1 cut(s) 659
BfaI CTAG 2 cut(s) 305, 660
BfmI CTRYAG 1 cut(s) 816
BfoI RGCGCY 1 cut(s) 1482
BfrI CTTAAG 1 cut(s) 602
BfuAI ACCTGC 1 cut(s) 1074
BfuI GTATCC 1 cut(s) 463
BglI GCCNNNNNGGC 1 cut(s) 1341
BglII AGATCT 1 cut(s) 134
BisI GCNGC 6 cut(s) 39, 66, 199, 537, 540, 549
BlsI GCNGC 6 cut(s) 40, 67, 200, 538, 541, 550
Bme1390I CCNGG 5 cut(s) 399, 510, 1032, 1053, 1449
Bme18I GGWCC 2 cut(s) 1166, 1406
BmgT120I GGNCC 2 cut(s) 1166, 1406
BmiI GGNNCC 5 cut(s) 676, 759, 1126, 1299, 1407
BmrFI CCNGG 5 cut(s) 399, 510, 1032, 1053, 1449
BmrI ACTGGG 1 cut(s) 778
BmsI GCATC 4 cut(s) 85, 226, 909, 1324
BmuI ACTGGG 1 cut(s) 778
BpiI GAAGAC 1 cut(s) 468
BpmI CTGGAG 1 cut(s) 821
Bpu14I TTCGAA 1 cut(s) 1428
BpuMI CCSGG 1 cut(s) 399
BsaAI YACGTR 2 cut(s) 1023, 1117
BsaBI GATNNNNATC 2 cut(s) 639, 1314
BsaJI CCNNGG 2 cut(s) 267, 1305
BsaXI ACNNNNNCTCC 2 cut(s) 1383, 1413
Bsc4I CCNNNNNNNGG 2 cut(s) 854, 1490
Bse118I RCCGGY 1 cut(s) 896
Bse1I ACTGG 2 cut(s) 773, 1463
Bse3DI GCAATG 1 cut(s) 60
Bse8I GATNNNNATC 2 cut(s) 639, 1314
BseBI CCWGG 4 cut(s) 510, 1032, 1053, 1449
BseDI CCNNGG 2 cut(s) 267, 1305
BseGI GGATG 6 cut(s) 612, 718, 838, 884, 1239, 1315
BseJI GATNNNNATC 2 cut(s) 639, 1314
BseLI CCNNNNNNNGG 2 cut(s) 854, 1490
BseMI GCAATG 1 cut(s) 60
BseNI ACTGG 2 cut(s) 773, 1463
BseXI GCAGC 4 cut(s) 50, 210, 548, 560
Bsh1236I CGCG 1 cut(s) 542
BshFI GGCC 3 cut(s) 129, 272, 457
BshNI GGYRCC 3 cut(s) 757, 1124, 1297
BsiSI CCGG 2 cut(s) 399, 897
BslFI GGGAC 1 cut(s) 1419
BslI CCNNNNNNNGG 2 cut(s) 854, 1490
BsmFI GGGAC 1 cut(s) 1419
BsmI GAATGC 1 cut(s) 1502
BsnI GGCC 3 cut(s) 129, 272, 457
Bsp119I TTCGAA 1 cut(s) 1428
Bsp19I CCATGG 2 cut(s) 267, 1305
BspACI CCGC 5 cut(s) 63, 66, 527, 540, 1412
BspANI GGCC 3 cut(s) 129, 272, 457
BspFNI CGCG 1 cut(s) 542
BspLI GGNNCC 5 cut(s) 676, 759, 1126, 1299, 1407
BspMI ACCTGC 1 cut(s) 1074
BspPI GGATC 7 cut(s) 222, 334, 389, 655, 929, 1063, 1439
BspT104I TTCGAA 1 cut(s) 1428
BspT107I GGYRCC 3 cut(s) 757, 1124, 1297
BspTI CTTAAG 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 896
BsrI ACTGG 2 cut(s) 773, 1463
BssAI RCCGGY 1 cut(s) 896
BssECI CCNNGG 2 cut(s) 267, 1305
BssT1I CCWWGG 2 cut(s) 267, 1305
Bst2UI CCWGG 4 cut(s) 510, 1032, 1053, 1449
Bst4CI ACNGT 2 cut(s) 817, 1145
BstAFI CTTAAG 1 cut(s) 602
BstBAI YACGTR 2 cut(s) 1023, 1117
BstBI TTCGAA 1 cut(s) 1428
BstC8I GCNNGC 5 cut(s) 546, 679, 890, 894, 898
BstDSI CCRYGG 2 cut(s) 267, 1305
BstF5I GGATG 6 cut(s) 612, 718, 838, 884, 1239, 1315
BstFNI CGCG 1 cut(s) 542
BstH2I RGCGCY 1 cut(s) 1482
BstHHI GCGC 2 cut(s) 544, 1481
BstMWI GCNNNNNNNGC 9 cut(s) 65, 350, 420, 533, 545, 548, 755, 1321, 1341
BstNI CCWGG 4 cut(s) 510, 1032, 1053, 1449
BstNSI RCATGY 2 cut(s) 344, 896
BstSCI CCNGG 5 cut(s) 397, 508, 1030, 1051, 1447
BstSFI CTRYAG 1 cut(s) 816
BstSNI TACGTA 1 cut(s) 1023
BstUI CGCG 1 cut(s) 542
BstV1I GCAGC 4 cut(s) 50, 210, 548, 560
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 5 cut(s) 134, 214, 326, 647, 1055
BstXI CCANNNNNNTGG 2 cut(s) 137, 768
BstYI RGATCY 5 cut(s) 134, 214, 326, 647, 1055
BsuI GTATCC 1 cut(s) 463
BsuRI GGCC 3 cut(s) 129, 272, 457
BtgI CCRYGG 2 cut(s) 267, 1305
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 6 cut(s) 612, 718, 838, 884, 1239, 1315
BtsIMutI CAGTG 1 cut(s) 813
BveI ACCTGC 1 cut(s) 1074
Cac8I GCNNGC 5 cut(s) 546, 679, 890, 894, 898
CfoI GCGC 2 cut(s) 544, 1481
Cfr10I RCCGGY 1 cut(s) 896
Cfr13I GGNCC 2 cut(s) 1166, 1406
CsiI ACCWGGT 2 cut(s) 508, 1030
Csp6I GTAC 3 cut(s) 6, 1257, 1298
CviQI GTAC 3 cut(s) 6, 1257, 1298
DraIII CACNNNGTG 1 cut(s) 1034
Eco105I TACGTA 1 cut(s) 1023
Eco130I CCWWGG 2 cut(s) 267, 1305
Eco147I AGGCCT 1 cut(s) 457
Eco32I GATATC 1 cut(s) 1080
Eco47I GGWCC 2 cut(s) 1166, 1406
Eco57I CTGAAG 1 cut(s) 480
EcoRI GAATTC 2 cut(s) 151, 872
EcoRII CCWGG 4 cut(s) 508, 1030, 1051, 1447
EcoRV GATATC 1 cut(s) 1080
EcoT14I CCWWGG 2 cut(s) 267, 1305
ErhI CCWWGG 2 cut(s) 267, 1305
FalI AAGNNNNNCTT 4 cut(s) 245, 277, 1210, 1242
FaqI GGGAC 1 cut(s) 1419
FauNDI CATATG 1 cut(s) 487
Fnu4HI GCNGC 6 cut(s) 39, 66, 199, 537, 540, 549
FokI GGATG 6 cut(s) 599, 725, 845, 891, 1246, 1302
Fsp4HI GCNGC 6 cut(s) 39, 66, 199, 537, 540, 549
FspBI CTAG 2 cut(s) 305, 660
GlaI GCGC 2 cut(s) 543, 1480
GluI GCNGC 6 cut(s) 39, 66, 199, 537, 540, 549
GsuI CTGGAG 1 cut(s) 821
HaeII RGCGCY 1 cut(s) 1482
HaeIII GGCC 3 cut(s) 129, 272, 457
HapII CCGG 2 cut(s) 399, 897
HhaI GCGC 2 cut(s) 544, 1481
Hin6I GCGC 2 cut(s) 542, 1479
HinP1I GCGC 2 cut(s) 542, 1479
HinfI GANTC 8 cut(s) 76, 179, 593, 803, 998, 1038, 1372, 1433
HpaII CCGG 2 cut(s) 399, 897
HphI GGTGA 4 cut(s) 254, 872, 993, 1020
Hpy166II GTNNAC 2 cut(s) 6, 1037
Hpy188I TCNGA 8 cut(s) 331, 517, 577, 592, 878, 1217, 1371, 1459
Hpy188III TCNNGA 3 cut(s) 305, 800, 1437
Hpy8I GTNNAC 2 cut(s) 6, 1037
Hpy99I CGWCG 1 cut(s) 674
HpyAV CCTTC 4 cut(s) 26, 119, 283, 1311
HpyCH4III ACNGT 2 cut(s) 817, 1145
HpyCH4IV ACGT 2 cut(s) 1022, 1116
HpyCH4V TGCA 3 cut(s) 548, 632, 1069
HpyF10VI GCNNNNNNNGC 9 cut(s) 65, 350, 420, 533, 545, 548, 755, 1321, 1341
HpySE526I ACGT 2 cut(s) 1022, 1116
HspAI GCGC 2 cut(s) 542, 1479
KpnI GGTACC 1 cut(s) 1301
KroI GCCGGC 1 cut(s) 896
KroNI GCCGGC 1 cut(s) 898
LmnI GCTCC 7 cut(s) 297, 674, 728, 989, 1012, 1372, 1391
Lsp1109I GCAGC 4 cut(s) 50, 210, 548, 560
LweI GCATC 4 cut(s) 85, 226, 909, 1324
MabI ACCWGGT 2 cut(s) 508, 1030
MaeI CTAG 2 cut(s) 305, 660
MaeII ACGT 2 cut(s) 1022, 1116
MaeIII GTNAC 9 cut(s) 73, 144, 227, 242, 493, 860, 1018, 1061, 1465
MboII GAAGA 3 cut(s) 473, 1085, 1442
MflI RGATCY 5 cut(s) 134, 214, 326, 647, 1055
MlyI GAGTC 4 cut(s) 70, 587, 812, 1032
MnlI CCTC 5 cut(s) 165, 218, 447, 565, 1278
MroNI GCCGGC 1 cut(s) 896
MseI TTAA 5 cut(s) 23, 381, 567, 603, 1509
MslI CAYNNNNRTG 3 cut(s) 617, 818, 1284
MspA1I CMGCKG 1 cut(s) 1412
MspCI CTTAAG 1 cut(s) 602
MspI CCGG 2 cut(s) 399, 897
MspR9I CCNGG 5 cut(s) 399, 510, 1032, 1053, 1449
Mva1269I GAATGC 1 cut(s) 1502
MvaI CCWGG 4 cut(s) 510, 1032, 1053, 1449
MvnI CGCG 1 cut(s) 542
MwoI GCNNNNNNNGC 9 cut(s) 65, 350, 420, 533, 545, 548, 755, 1321, 1341
NaeI GCCGGC 1 cut(s) 898
NciI CCSGG 1 cut(s) 399
NcoI CCATGG 2 cut(s) 267, 1305
NdeI CATATG 1 cut(s) 487
NgoMIV GCCGGC 1 cut(s) 896
NlaIV GGNNCC 5 cut(s) 676, 759, 1126, 1299, 1407
NmuCI GTSAC 3 cut(s) 73, 242, 860
NspI RCATGY 2 cut(s) 344, 896
NspV TTCGAA 1 cut(s) 1428
OliI CACNNNNGTG 1 cut(s) 818
PaeI GCATGC 1 cut(s) 896
PceI AGGCCT 1 cut(s) 457
PctI GAATGC 1 cut(s) 1502
PdiI GCCGGC 1 cut(s) 898
PfeI GAWTC 4 cut(s) 179, 998, 1372, 1433
PflMI CCANNNNNTGG 1 cut(s) 854
PfoI TCCNGGA 1 cut(s) 1447
PkrI GCNGC 6 cut(s) 40, 67, 200, 538, 541, 550
PleI GAGTC 4 cut(s) 70, 587, 811, 1032
PpsI GAGTC 4 cut(s) 70, 587, 811, 1032
Ppu21I YACGTR 2 cut(s) 1023, 1117
Psp6I CCWGG 4 cut(s) 508, 1030, 1051, 1447
PspGI CCWGG 4 cut(s) 508, 1030, 1051, 1447
PspN4I GGNNCC 5 cut(s) 676, 759, 1126, 1299, 1407
PspPI GGNCC 2 cut(s) 1166, 1406
PsuI RGATCY 5 cut(s) 134, 214, 326, 647, 1055
RsaI GTAC 3 cut(s) 7, 1258, 1299
RsaNI GTAC 3 cut(s) 6, 1257, 1298
RseI CAYNNNNRTG 3 cut(s) 617, 818, 1284
SaqAI TTAA 5 cut(s) 23, 381, 567, 603, 1509
SatI GCNGC 6 cut(s) 39, 66, 199, 537, 540, 549
Sau96I GGNCC 2 cut(s) 1166, 1406
SchI GAGTC 4 cut(s) 70, 587, 812, 1032
ScrFI CCNGG 5 cut(s) 399, 510, 1032, 1053, 1449
SexAI ACCWGGT 2 cut(s) 508, 1030
SfaNI GCATC 4 cut(s) 85, 226, 909, 1324
SfcI CTRYAG 1 cut(s) 816
SfuI TTCGAA 1 cut(s) 1428
SinI GGWCC 2 cut(s) 1166, 1406
SmiMI CAYNNNNRTG 3 cut(s) 617, 818, 1284
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
SnaBI TACGTA 1 cut(s) 1023
SpeI ACTAGT 1 cut(s) 659
SphI GCATGC 1 cut(s) 896
SseBI AGGCCT 1 cut(s) 457
SsiI CCGC 5 cut(s) 63, 66, 527, 540, 1412
SspMI CTAG 2 cut(s) 305, 660
StuI AGGCCT 1 cut(s) 457
StyD4I CCNGG 5 cut(s) 397, 508, 1030, 1051, 1447
StyI CCWWGG 2 cut(s) 267, 1305
TaaI ACNGT 2 cut(s) 817, 1145
TaiI ACGT 2 cut(s) 1025, 1119
TaqI TCGA 4 cut(s) 104, 1111, 1428, 1438
TauI GCSGC 2 cut(s) 68, 542
TfiI GAWTC 4 cut(s) 179, 998, 1372, 1433
Tru1I TTAA 5 cut(s) 23, 381, 567, 603, 1509
Tru9I TTAA 5 cut(s) 23, 381, 567, 603, 1509
TscAI CASTG 1 cut(s) 820
TseFI GTSAC 3 cut(s) 73, 242, 860
TseI GCWGC 4 cut(s) 38, 198, 536, 548
Tsp45I GTSAC 3 cut(s) 73, 242, 860
TspDTI ATGAA 6 cut(s) 179, 197, 723, 729, 946, 1343
TspGWI ACGGA 3 cut(s) 447, 687, 942
TspRI CASTG 1 cut(s) 820
Van91I CCANNNNNTGG 1 cut(s) 854
Vha464I CTTAAG 1 cut(s) 602
VpaK11BI GGWCC 2 cut(s) 1166, 1406
XapI RAATTY 3 cut(s) 151, 872, 1262
XbaI TCTAGA 1 cut(s) 304
XceI RCATGY 2 cut(s) 344, 896
XspI CTAG 2 cut(s) 305, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.