FvH4_7g27775

Endoglucanase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
20717186 .. 20719352
2167 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27775.t1

Sequence Viewer

Length: 1545 bp
ATGTCTAGTAGTAGTTCTAAACAACCATTAAGGTTGTTGATAGTAGCAGTAGGGATGTTGGCAGTGGCGGCAGTAGTAAGCTCTGCAGTTCAACATAACTACGCGGATGCTTTGTCGAAGAGTATATTGTTTTTCGAAGGGCAGAGATCAGGAAGGTTACCGCATACGCAACGAATGAAATGGAGGAAAGATTCTGCTCTACGTGATGGCCTAGATGTTAATATGGATCTGACCGGAGGTTACTATGATGCCGGTGACAATGTGAAATTTAACTTTCCGATGGCTTTCAGCACAACAATGTTGTCATGGAGTGTTATAGAATTTAGAAAATCAATGGGTTCAGAACTTCCGCATGCCTTGGAAGCCATTAGATGGGGGACTGATTATTTGCTCAAATGCACTAGTGTTAGAGGTTCTGTTGTTGCTGTAGTCGGTGACCCTAATGGTGATCACACTTGTTGGCAAAGGCCTGAAGACATGACCACTCCTCGAACATCTTACATAGTGACTACACAAAAACCAGGTTCTGAAGTTGCAGCTGAGATTGCAGCCGCACTCGCAGCTTCTTCCATGGTGTTTCGTCGTTCTGACAATGCTTACTCCAGGTCACTTCTTAAGCGAGCAAGACAGGTGTTTGCATTTGCTAACAAATATAGGGGCTCTTACAATGACAGTATTGGCAGTGGAGCATGCCCATTTTACTGCGACATCAGTGGCTACAAGGATGAATTGATTTGGGGAGCAGCATGGTTATGCAAGGCAACTAAGAGTCCTAAGTATTGGAACTATGTAAAACAGAACACAAACACCATGAATTCGGTGTCCCATGTAGTCCTAAGAAATGTGGAAGGCCAAGCAGTTGCTTACTATGGCGGAGATGTCACCGAATTTGGATGGGATGCAAAGCATGCTGGCATTAACATACTTGTTTCTAAATGGTTGATGAGACACCCCGCAGCCGAGTCCAATCCCTTTATCGCCAAAGCCAATGGGCTTATTTGCTCCATTCTGCCTGAATCACCTACTCCCAAATCAGTCACATACTCACCAGGTGGGCTCTTGTTCAAACCCGGAAGCAGTAACTTGCAACATACAACAGCTTTATCTTTTCTTCTACTAGTTTATGCTCGCTATATGACAGCTGCAAGCAAAGTTGTAAGCTGTGGTAACAATGTTGTCGTCAAACCAGCTAGGCTGGTAGAATTCACCAAAGGACAGGTTGATTATATACTGGGGAGCAATCCTAACAGGATGTCATACATGGTAGGATATGGTACTAGATTTCCCCAGAAGATACATCACCGCGGATCAGTGATACCTTCGATGGATAAACTCCCGCAAAATATGCAGTGTCATGAAGCAGACATGTATTTCAAAGCTCCGACGCCGGATCCAAACTTGCTCATAGGTGCAGTCGTTGGAGGACCAGCTGAGGATGATACATTTGAAGATTCTCGATATAATGTTGCACAATCGGAGCCTACCACTTACATCAATGCACCACTTGTTGGTGTTTTGGCTCACTTCAAATCACCATCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

515

Amino Acids

56.42

Weight (kDa)

9.1

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 34 - 506 5.5e-153 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000663)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 372, 1508
AccII CGCG 2 cut(s) 104, 1305
AclWI GGATC 4 cut(s) 234, 1315, 1385, 1398
AcsI RAATTY 5 cut(s) 266, 320, 814, 887, 1202
AcuI CTGAAG 2 cut(s) 492, 549
AcyI GRCGYC 1 cut(s) 1385
AdeI CACNNNGTG 1 cut(s) 1052
AfaI GTAC 1 cut(s) 1276
AfiI CCNNNNNNNGG 2 cut(s) 372, 1508
AflII CTTAAG 1 cut(s) 614
AflIII ACRYGT 1 cut(s) 1365
AgsI TTSAA 5 cut(s) 92, 1066, 1375, 1448, 1528
AhlI ACTAGT 2 cut(s) 401, 1117
AjnI CCWGG 3 cut(s) 520, 602, 1048
AluBI AGCT 9 cut(s) 81, 539, 563, 1100, 1142, 1161, 1190, 1379, 1430
AluI AGCT 9 cut(s) 81, 539, 563, 1100, 1142, 1161, 1190, 1379, 1430
Alw26I GTCTC 1 cut(s) 940
AlwI GGATC 4 cut(s) 234, 1315, 1385, 1398
AlwNI CAGNNNCTG 1 cut(s) 527
AoxI GGCC 3 cut(s) 208, 467, 850
ApeKI GCWGC 6 cut(s) 536, 548, 560, 743, 956, 1142
ApoI RAATTY 5 cut(s) 266, 320, 814, 887, 1202
ArsI GACNNNNNNTTYG 2 cut(s) 370, 402
AspS9I GGNCC 1 cut(s) 1424
AsuC2I CCSGG 1 cut(s) 1071
AsuHPI GGTGA 9 cut(s) 266, 446, 458, 874, 1011, 1038, 1198, 1292, 1524
AsuII TTCGAA 1 cut(s) 135
AvaII GGWCC 1 cut(s) 1424
BamHI GGATCC 1 cut(s) 1390
BanII GRGCYC 2 cut(s) 662, 1059
BbsI GAAGAC 1 cut(s) 480
BbvCI CCTCAGC 1 cut(s) 1431
BbvI GCAGC 6 cut(s) 548, 560, 572, 755, 968, 1129
BccI CCATC 6 cut(s) 200, 274, 366, 888, 1318, 1543
BciT130I CCWGG 3 cut(s) 522, 604, 1050
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 1071
BcoDI GTCTC 1 cut(s) 940
BcuI ACTAGT 2 cut(s) 401, 1117
BfaI CTAG 6 cut(s) 6, 212, 402, 1118, 1191, 1278
BfmI CTRYAG 2 cut(s) 84, 426
BfrI CTTAAG 1 cut(s) 614
BisI GCNGC 8 cut(s) 69, 537, 549, 552, 561, 744, 957, 1143
BlsI GCNGC 8 cut(s) 70, 538, 550, 553, 562, 745, 958, 1144
Bme1390I CCNGG 4 cut(s) 522, 604, 1050, 1071
Bme18I GGWCC 1 cut(s) 1424
BmgT120I GGNCC 1 cut(s) 1424
BmiI GGNNCC 2 cut(s) 1392, 1479
BmrFI CCNGG 4 cut(s) 522, 604, 1050, 1071
BmrI ACTGGG 1 cut(s) 1241
BmsI GCATC 3 cut(s) 97, 238, 889
BmuI ACTGGG 1 cut(s) 1241
BpiI GAAGAC 1 cut(s) 480
BpmI CTGGAG 1 cut(s) 586
Bpu10I CCTNAGC 1 cut(s) 1431
Bpu14I TTCGAA 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 1071
BsaAI YACGTR 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 1385
BsaJI CCNNGG 3 cut(s) 357, 570, 1303
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 2 cut(s) 372, 1508
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 1236
BseBI CCWGG 3 cut(s) 522, 604, 1050
BseDI CCNNGG 3 cut(s) 357, 570, 1303
BseGI GGATG 7 cut(s) 60, 112, 730, 899, 904, 1257, 1441
BseLI CCNNNNNNNGG 2 cut(s) 372, 1508
BseMII CTCAG 2 cut(s) 531, 1422
BseNI ACTGG 1 cut(s) 1236
BseRI GAGGAG 1 cut(s) 477
BseXI GCAGC 6 cut(s) 548, 560, 572, 755, 968, 1129
BsgI GTGCAG 1 cut(s) 1431
Bsh1236I CGCG 2 cut(s) 104, 1305
BshFI GGCC 3 cut(s) 210, 469, 852
BsiSI CCGG 4 cut(s) 234, 252, 1071, 1388
BslFI GGGAC 2 cut(s) 391, 808
BslI CCNNNNNNNGG 2 cut(s) 372, 1508
BsmAI GTCTC 1 cut(s) 940
BsmFI GGGAC 2 cut(s) 391, 808
BsnI GGCC 3 cut(s) 210, 469, 852
Bsp119I TTCGAA 1 cut(s) 135
Bsp1286I GDGCHC 2 cut(s) 662, 1059
Bsp143I GATC 5 cut(s) 146, 226, 448, 1307, 1390
Bsp19I CCATGG 1 cut(s) 570
BspANI GGCC 3 cut(s) 210, 469, 852
BspCNI CTCAG 2 cut(s) 532, 1423
BspFNI CGCG 2 cut(s) 104, 1305
BspHI TCATGA 1 cut(s) 1354
BspLI GGNNCC 2 cut(s) 1392, 1479
BspMAI CTGCAG 1 cut(s) 88
BspPI GGATC 4 cut(s) 234, 1315, 1385, 1398
BspT104I TTCGAA 1 cut(s) 135
BspTI CTTAAG 1 cut(s) 614
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 1 cut(s) 1236
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 3 cut(s) 357, 570, 1303
BssMI GATC 5 cut(s) 146, 226, 448, 1307, 1390
BssNI GRCGYC 1 cut(s) 1385
BssT1I CCWWGG 2 cut(s) 357, 570
Bst2UI CCWGG 3 cut(s) 522, 604, 1050
Bst4CI ACNGT 1 cut(s) 674
Bst6I CTCTTC 1 cut(s) 113
BstACI GRCGYC 1 cut(s) 1385
BstAFI CTTAAG 1 cut(s) 614
BstAPI GCANNNNNTGC 2 cut(s) 908, 1345
BstBAI YACGTR 1 cut(s) 203
BstBI TTCGAA 1 cut(s) 135
BstC8I GCNNGC 7 cut(s) 354, 621, 691, 909, 913, 1129, 1147
BstDEI CTNAG 5 cut(s) 540, 765, 774, 836, 1431
BstDSI CCRYGG 2 cut(s) 570, 1303
BstEII GGTNACC 2 cut(s) 156, 434
BstF5I GGATG 7 cut(s) 60, 112, 730, 899, 904, 1257, 1441
BstFNI CGCG 2 cut(s) 104, 1305
BstKTI GATC 5 cut(s) 149, 229, 451, 1310, 1393
BstMAI GTCTC 1 cut(s) 940
BstMBI GATC 5 cut(s) 146, 226, 448, 1307, 1390
BstMWI GCNNNNNNNGC 7 cut(s) 68, 362, 545, 557, 560, 908, 1345
BstNI CCWGG 3 cut(s) 522, 604, 1050
BstNSI RCATGY 4 cut(s) 356, 693, 911, 1369
BstPI GGTNACC 2 cut(s) 156, 434
BstSCI CCNGG 4 cut(s) 520, 602, 1048, 1069
BstSFI CTRYAG 2 cut(s) 84, 426
BstUI CGCG 2 cut(s) 104, 1305
BstV1I GCAGC 6 cut(s) 548, 560, 572, 755, 968, 1129
BstV2I GAAGAC 1 cut(s) 480
BstX2I RGATCY 2 cut(s) 226, 1390
BstYI RGATCY 2 cut(s) 226, 1390
BsuRI GGCC 3 cut(s) 210, 469, 852
BtgI CCRYGG 2 cut(s) 570, 1303
BtsCI GGATG 7 cut(s) 60, 112, 730, 899, 904, 1257, 1441
BtsI GCAGTG 3 cut(s) 69, 688, 1355
BtsIMutI CAGTG 5 cut(s) 69, 688, 718, 1317, 1355
Cac8I GCNNGC 7 cut(s) 354, 621, 691, 909, 913, 1129, 1147
CaiI CAGNNNCTG 1 cut(s) 527
CciI TCATGA 1 cut(s) 1354
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 1424
Cfr42I CCGCGG 1 cut(s) 1306
CseI GACGC 1 cut(s) 1393
CsiI ACCWGGT 2 cut(s) 520, 1048
Csp6I GTAC 1 cut(s) 1275
CviQI GTAC 1 cut(s) 1275
DdeI CTNAG 5 cut(s) 540, 765, 774, 836, 1431
DpnI GATC 5 cut(s) 148, 228, 450, 1309, 1392
DpnII GATC 5 cut(s) 146, 226, 448, 1307, 1390
DraIII CACNNNGTG 1 cut(s) 1052
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EciI GGCGGA 1 cut(s) 888
Eco130I CCWWGG 2 cut(s) 357, 570
Eco147I AGGCCT 1 cut(s) 469
Eco24I GRGCYC 2 cut(s) 662, 1059
Eco47I GGWCC 1 cut(s) 1424
Eco57I CTGAAG 2 cut(s) 492, 549
Eco91I GGTNACC 2 cut(s) 156, 434
EcoO65I GGTNACC 2 cut(s) 156, 434
EcoRI GAATTC 2 cut(s) 814, 1202
EcoRII CCWGG 3 cut(s) 520, 602, 1048
EcoT14I CCWWGG 2 cut(s) 357, 570
EcoT38I GRGCYC 2 cut(s) 662, 1059
ErhI CCWWGG 2 cut(s) 357, 570
FaqI GGGAC 2 cut(s) 391, 808
FauI CCCGC 2 cut(s) 961, 1344
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 8 cut(s) 69, 537, 549, 552, 561, 744, 957, 1143
FokI GGATG 7 cut(s) 67, 119, 737, 906, 911, 1264, 1448
FriOI GRGCYC 2 cut(s) 662, 1059
Fsp4HI GCNGC 8 cut(s) 69, 537, 549, 552, 561, 744, 957, 1143
FspBI CTAG 6 cut(s) 6, 212, 402, 1118, 1191, 1278
GluI GCNGC 8 cut(s) 69, 537, 549, 552, 561, 744, 957, 1143
GsuI CTGGAG 1 cut(s) 586
HaeIII GGCC 3 cut(s) 210, 469, 852
HapII CCGG 4 cut(s) 234, 252, 1071, 1388
HgaI GACGC 1 cut(s) 1393
Hin1I GRCGYC 1 cut(s) 1385
HinfI GANTC 5 cut(s) 191, 769, 962, 1016, 1451
HpaII CCGG 4 cut(s) 234, 252, 1071, 1388
HphI GGTGA 9 cut(s) 266, 446, 458, 874, 1011, 1038, 1198, 1292, 1524
Hpy188I TCNGA 7 cut(s) 231, 279, 343, 529, 589, 1383, 1477
Hpy188III TCNNGA 3 cut(s) 150, 1355, 1455
Hpy99I CGWCG 2 cut(s) 585, 1387
HpyAV CCTTC 4 cut(s) 131, 147, 842, 1329
HpyCH4III ACNGT 1 cut(s) 674
HpyCH4IV ACGT 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 362, 545, 557, 560, 908, 1345
HpyF3I CTNAG 5 cut(s) 540, 765, 774, 836, 1431
HpySE526I ACGT 1 cut(s) 202
Hsp92I GRCGYC 1 cut(s) 1385
Ksp22I TGATCA 1 cut(s) 448
KspI CCGCGG 1 cut(s) 1306
Kzo9I GATC 5 cut(s) 146, 226, 448, 1307, 1390
LmnI GCTCC 6 cut(s) 686, 740, 1007, 1236, 1384, 1477
Lsp1109I GCAGC 6 cut(s) 548, 560, 572, 755, 968, 1129
LweI GCATC 3 cut(s) 97, 238, 889
MabI ACCWGGT 2 cut(s) 520, 1048
MaeI CTAG 6 cut(s) 6, 212, 402, 1118, 1191, 1278
MaeII ACGT 1 cut(s) 202
MalI GATC 5 cut(s) 148, 228, 450, 1309, 1392
MboI GATC 5 cut(s) 146, 226, 448, 1307, 1390
MboII GAAGA 6 cut(s) 130, 485, 558, 1103, 1303, 1460
MflI RGATCY 2 cut(s) 226, 1390
MhlI GDGCHC 2 cut(s) 662, 1059
MluCI AATT 6 cut(s) 266, 320, 728, 814, 887, 1202
MlyI GAGTC 2 cut(s) 778, 971
MmeI TCCRAC 2 cut(s) 1399, 1406
MnlI CCTC 6 cut(s) 177, 230, 404, 498, 1415, 1426
MseI TTAA 5 cut(s) 29, 219, 270, 615, 918
MslI CAYNNNNRTG 2 cut(s) 296, 751
MspA1I CMGCKG 4 cut(s) 539, 1142, 1305, 1430
MspCI CTTAAG 1 cut(s) 614
MspI CCGG 4 cut(s) 234, 252, 1071, 1388
MspR9I CCNGG 4 cut(s) 522, 604, 1050, 1071
MvaI CCWGG 3 cut(s) 522, 604, 1050
MvnI CGCG 2 cut(s) 104, 1305
MwoI GCNNNNNNNGC 7 cut(s) 68, 362, 545, 557, 560, 908, 1345
NciI CCSGG 1 cut(s) 1071
NcoI CCATGG 1 cut(s) 570
NdeII GATC 5 cut(s) 146, 226, 448, 1307, 1390
NlaIV GGNNCC 2 cut(s) 1392, 1479
NmeAIII GCCGAG 1 cut(s) 985
NmuCI GTSAC 6 cut(s) 254, 434, 505, 606, 880, 1036
NspI RCATGY 4 cut(s) 356, 693, 911, 1369
NspV TTCGAA 1 cut(s) 135
PaeI GCATGC 3 cut(s) 356, 693, 911
PagI TCATGA 1 cut(s) 1354
PceI AGGCCT 1 cut(s) 469
PciI ACATGT 1 cut(s) 1365
PfeI GAWTC 3 cut(s) 191, 1016, 1451
PflMI CCANNNNNTGG 2 cut(s) 372, 1508
PkrI GCNGC 8 cut(s) 70, 538, 550, 553, 562, 745, 958, 1144
PleI GAGTC 2 cut(s) 777, 970
PpsI GAGTC 2 cut(s) 777, 970
Ppu21I YACGTR 1 cut(s) 203
PscI ACATGT 1 cut(s) 1365
Psp6I CCWGG 3 cut(s) 520, 602, 1048
PspEI GGTNACC 2 cut(s) 156, 434
PspGI CCWGG 3 cut(s) 520, 602, 1048
PspN4I GGNNCC 2 cut(s) 1392, 1479
PspPI GGNCC 1 cut(s) 1424
PstI CTGCAG 1 cut(s) 88
PstNI CAGNNNCTG 1 cut(s) 527
PsuI RGATCY 2 cut(s) 226, 1390
PvuII CAGCTG 3 cut(s) 539, 1142, 1430
RsaI GTAC 1 cut(s) 1276
RsaNI GTAC 1 cut(s) 1275
RseI CAYNNNNRTG 2 cut(s) 296, 751
SacII CCGCGG 1 cut(s) 1306
SaqAI TTAA 5 cut(s) 29, 219, 270, 615, 918
SatI GCNGC 8 cut(s) 69, 537, 549, 552, 561, 744, 957, 1143
Sau3AI GATC 5 cut(s) 146, 226, 448, 1307, 1390
Sau96I GGNCC 1 cut(s) 1424
SchI GAGTC 2 cut(s) 778, 971
ScrFI CCNGG 4 cut(s) 522, 604, 1050, 1071
SduI GDGCHC 2 cut(s) 662, 1059
SexAI ACCWGGT 2 cut(s) 520, 1048
SfaNI GCATC 3 cut(s) 97, 238, 889
SfcI CTRYAG 2 cut(s) 84, 426
Sfr303I CCGCGG 1 cut(s) 1306
SfuI TTCGAA 1 cut(s) 135
SgrBI CCGCGG 1 cut(s) 1306
SinI GGWCC 1 cut(s) 1424
SmiMI CAYNNNNRTG 2 cut(s) 296, 751
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
SpeI ACTAGT 2 cut(s) 401, 1117
SphI GCATGC 3 cut(s) 356, 693, 911
Sse9I AATT 6 cut(s) 266, 320, 728, 814, 887, 1202
SseBI AGGCCT 1 cut(s) 469
SspMI CTAG 6 cut(s) 6, 212, 402, 1118, 1191, 1278
StuI AGGCCT 1 cut(s) 469
StyD4I CCNGG 4 cut(s) 520, 602, 1048, 1069
StyI CCWWGG 2 cut(s) 357, 570
TaaI ACNGT 1 cut(s) 674
TaiI ACGT 1 cut(s) 205
TaqI TCGA 5 cut(s) 116, 135, 490, 1322, 1456
TasI AATT 6 cut(s) 266, 320, 728, 814, 887, 1202
TauI GCSGC 2 cut(s) 71, 554
TfiI GAWTC 3 cut(s) 191, 1016, 1451
Tru1I TTAA 5 cut(s) 29, 219, 270, 615, 918
Tru9I TTAA 5 cut(s) 29, 219, 270, 615, 918
TscAI CASTG 5 cut(s) 69, 688, 718, 1317, 1355
TseFI GTSAC 6 cut(s) 254, 434, 505, 606, 880, 1036
TseI GCWGC 6 cut(s) 536, 548, 560, 743, 956, 1142
Tsp45I GTSAC 6 cut(s) 254, 434, 505, 606, 880, 1036
TspDTI ATGAA 4 cut(s) 191, 741, 827, 1371
TspRI CASTG 5 cut(s) 69, 688, 718, 1317, 1355
Van91I CCANNNNNTGG 2 cut(s) 372, 1508
Vha464I CTTAAG 1 cut(s) 614
VpaK11BI GGWCC 1 cut(s) 1424
XapI RAATTY 5 cut(s) 266, 320, 814, 887, 1202
XceI RCATGY 4 cut(s) 356, 693, 911, 1369
XspI CTAG 6 cut(s) 6, 212, 402, 1118, 1191, 1278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.