Rmu_sc0004947.1_g000008

Endoglucanase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004947.1
Physical Location & Seq
Forward (+)
36361 .. 37948
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004947.1_g000008.1.cds

Sequence Viewer

Length: 981 bp
atgagcaaattagtcatgtctagtagtaatattaaacaaccattaaggttgttgatggtagaagaagggatgttggcaatggcaacactagtaagctctgcggttcaacataactacgcggatgctttgtcaaaaagtattttgttttttgaagggcagagatcgggtaggttgccgcatacacaacgaatgatatggaggaaagattcggctctacgtgatggcctagatgttaaaaattcggaaaatcaatgggctcagaacttccacatgccttggaacttggaagccattagatgggcgactgactatttgcttaaatccactagtgctagtggttctgttgttggtgtagtcggtgatcctaatggtgaccacacttgttgggaaaggcctgaagacatggacactcctcgaacatcttacatagtaaccacacaaaagccaggttccaaagtttcaacagagactgcagccgcatttgcagcttcttccatagtgtttagtggttctgacaaaggatattctaccttgcttcttacccgagcaagacaggtgtttgaatttgctgataaatataggcgttcttacaatgacagtattgggagtggagcatgcccattttactgtgactttaatggctacaaggtaaaatatttattcaatcagctgacctcaacttgtgtttccaactttgctaatcaatttgccttacaggatgaattgatttggggagcagcatggttatacaaggcaacaaggagtcctatttattggaactatgtaaaacagaacatagatgccatgaatttggagtccaatgtagtcctaagaaatgtggaaggccaagcagttgtatacaatggcggagatgttaccgaatttggatgggatgcaaagcctgctggcattaacatccttgtttctcaactaaatacttgtttctctttcataatggtcatgaatgtgatccttggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

326

Amino Acids

36.43

Weight (kDa)

6.9

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000663)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 297
AccI GTMKAC 1 cut(s) 858
AccII CGCG 1 cut(s) 119
AciI CCGC 5 cut(s) 101, 119, 176, 477, 867
AclWI GGATC 2 cut(s) 356, 964
AcsI RAATTY 4 cut(s) 238, 563, 808, 881
AcuI CTGAAG 1 cut(s) 417
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 5 cut(s) 107, 152, 462, 563, 664
AhlI ACTAGT 2 cut(s) 88, 326
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 3 cut(s) 96, 488, 670
AluI AGCT 3 cut(s) 96, 488, 670
Alw26I GTCTC 1 cut(s) 461
AlwI GGATC 2 cut(s) 356, 964
AlwNI CAGNNNCTG 1 cut(s) 470
Ama87I CYCGRG 1 cut(s) 543
AoxI GGCC 3 cut(s) 223, 392, 844
ApeKI GCWGC 3 cut(s) 473, 485, 737
ApoI RAATTY 4 cut(s) 238, 563, 808, 881
ArsI GACNNNNNNTTYG 2 cut(s) 295, 327
AsuHPI GGTGA 2 cut(s) 371, 383
AvaI CYCGRG 1 cut(s) 543
BanII GRGCYC 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 405
BbvI GCAGC 3 cut(s) 485, 497, 749
BccI CCATC 4 cut(s) 49, 215, 291, 882
BciT130I CCWGG 1 cut(s) 447
BcoDI GTCTC 1 cut(s) 461
BcuI ACTAGT 2 cut(s) 88, 326
BfaI CTAG 5 cut(s) 21, 89, 227, 327, 333
BfmI CTRYAG 1 cut(s) 471
BisI GCNGC 5 cut(s) 176, 474, 477, 486, 738
BlsI GCNGC 5 cut(s) 177, 475, 478, 487, 739
Bme1390I CCNGG 1 cut(s) 447
BmeT110I CYCGRG 1 cut(s) 543
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 1 cut(s) 447
BmsI GCATC 3 cut(s) 112, 790, 883
BpiI GAAGAC 1 cut(s) 405
BsaAI YACGTR 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 275, 973
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 2 cut(s) 275, 973
BseGI GGATG 6 cut(s) 75, 127, 724, 893, 898, 915
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 402
BseXI GCAGC 3 cut(s) 485, 497, 749
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 3 cut(s) 225, 394, 846
BsiHKCI CYCGRG 1 cut(s) 543
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 461
BsnI GGCC 3 cut(s) 225, 394, 846
BsoBI CYCGRG 1 cut(s) 543
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 3 cut(s) 161, 361, 969
BspACI CCGC 5 cut(s) 101, 119, 176, 477, 867
BspANI GGCC 3 cut(s) 225, 394, 846
BspCNI CTCAG 1 cut(s) 271
BspFNI CGCG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 960
BspLI GGNNCC 1 cut(s) 451
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 2 cut(s) 356, 964
BsrDI GCAATG 1 cut(s) 84
BssECI CCNNGG 2 cut(s) 275, 973
BssMI GATC 3 cut(s) 161, 361, 969
BssNAI GTATAC 1 cut(s) 859
BssT1I CCWWGG 2 cut(s) 275, 973
Bst1107I GTATAC 1 cut(s) 859
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 2 cut(s) 599, 629
BstAPI GCANNNNNTGC 1 cut(s) 902
BstBAI YACGTR 1 cut(s) 218
BstC8I GCNNGC 3 cut(s) 616, 903, 907
BstDEI CTNAG 2 cut(s) 258, 830
BstEII GGTNACC 1 cut(s) 371
BstF5I GGATG 6 cut(s) 75, 127, 724, 893, 898, 915
BstFNI CGCG 1 cut(s) 119
BstKTI GATC 3 cut(s) 164, 364, 972
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 3 cut(s) 161, 361, 969
BstMWI GCNNNNNNNGC 3 cut(s) 482, 485, 902
BstNI CCWGG 1 cut(s) 447
BstNSI RCATGY 2 cut(s) 274, 618
BstPI GGTNACC 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 445
BstSFI CTRYAG 1 cut(s) 471
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 3 cut(s) 485, 497, 749
BstV2I GAAGAC 1 cut(s) 405
BstXI CCANNNNNNTGG 1 cut(s) 811
BstZ17I GTATAC 1 cut(s) 859
BsuRI GGCC 3 cut(s) 225, 394, 846
BtsCI GGATG 6 cut(s) 75, 127, 724, 893, 898, 915
Cac8I GCNNGC 3 cut(s) 616, 903, 907
CaiI CAGNNNCTG 1 cut(s) 470
CciI TCATGA 1 cut(s) 960
CspCI CAANNNNNGTGG 4 cut(s) 257, 292, 365, 400
CviAII CATG 7 cut(s) 16, 271, 403, 615, 741, 805, 961
DdeI CTNAG 2 cut(s) 258, 830
DpnI GATC 3 cut(s) 163, 363, 971
DpnII GATC 3 cut(s) 161, 361, 969
EciI GGCGGA 1 cut(s) 882
Eco130I CCWWGG 2 cut(s) 275, 973
Eco147I AGGCCT 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 543
Eco91I GGTNACC 1 cut(s) 371
EcoO65I GGTNACC 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 445
EcoT14I CCWWGG 2 cut(s) 275, 973
EcoT38I GRGCYC 1 cut(s) 259
ErhI CCWWGG 2 cut(s) 275, 973
FaeI CATG 7 cut(s) 19, 274, 406, 618, 744, 808, 964
FatI CATG 7 cut(s) 15, 270, 402, 614, 740, 804, 960
FblI GTMKAC 1 cut(s) 858
Fnu4HI GCNGC 5 cut(s) 176, 474, 477, 486, 738
FokI GGATG 6 cut(s) 82, 134, 731, 900, 902, 905
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 5 cut(s) 176, 474, 477, 486, 738
FspBI CTAG 5 cut(s) 21, 89, 227, 327, 333
GluI GCNGC 5 cut(s) 176, 474, 477, 486, 738
HaeIII GGCC 3 cut(s) 225, 394, 846
Hin1II CATG 7 cut(s) 19, 274, 406, 618, 744, 808, 964
HinfI GANTC 3 cut(s) 206, 763, 815
HphI GGTGA 2 cut(s) 371, 383
Hpy166II GTNNAC 1 cut(s) 859
Hpy188I TCNGA 3 cut(s) 244, 261, 514
Hpy188III TCNNGA 1 cut(s) 961
Hpy8I GTNNAC 1 cut(s) 859
HpyAV CCTTC 3 cut(s) 59, 146, 836
HpyCH4III ACNGT 2 cut(s) 599, 629
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 3 cut(s) 473, 485, 896
HpyF10VI GCNNNNNNNGC 3 cut(s) 482, 485, 902
HpyF3I CTNAG 2 cut(s) 258, 830
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 7 cut(s) 19, 274, 406, 618, 744, 808, 964
Kzo9I GATC 3 cut(s) 161, 361, 969
LmnI GCTCC 2 cut(s) 611, 734
LpnPI CCDG 7 cut(s) 408, 432, 459, 539, 701, 891, 915
Lsp1109I GCAGC 3 cut(s) 485, 497, 749
LweI GCATC 3 cut(s) 112, 790, 883
MaeI CTAG 5 cut(s) 21, 89, 227, 327, 333
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 4 cut(s) 371, 430, 629, 874
MalI GATC 3 cut(s) 163, 363, 971
MboI GATC 3 cut(s) 161, 361, 969
MboII GAAGA 3 cut(s) 74, 410, 483
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 7 cut(s) 8, 238, 563, 704, 722, 808, 881
MlyI GAGTC 2 cut(s) 772, 824
MmeI TCCRAC 1 cut(s) 714
MnlI CCTC 3 cut(s) 192, 423, 685
MseI TTAA 7 cut(s) 33, 44, 234, 318, 636, 912, 979
MslI CAYNNNNRTG 1 cut(s) 965
MspA1I CMGCKG 1 cut(s) 670
MspR9I CCNGG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 447
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 3 cut(s) 482, 485, 902
NdeII GATC 3 cut(s) 161, 361, 969
NlaIII CATG 7 cut(s) 19, 274, 406, 618, 744, 808, 964
NlaIV GGNNCC 1 cut(s) 451
NmuCI GTSAC 2 cut(s) 371, 629
NspI RCATGY 2 cut(s) 274, 618
PaeI GCATGC 1 cut(s) 618
PagI TCATGA 1 cut(s) 960
PceI AGGCCT 1 cut(s) 394
PfeI GAWTC 1 cut(s) 206
PflMI CCANNNNNTGG 1 cut(s) 297
PkrI GCNGC 5 cut(s) 177, 475, 478, 487, 739
PleI GAGTC 2 cut(s) 771, 823
PpsI GAGTC 2 cut(s) 771, 823
Ppu21I YACGTR 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 445
PspEI GGTNACC 1 cut(s) 371
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 451
PstI CTGCAG 1 cut(s) 475
PstNI CAGNNNCTG 1 cut(s) 470
PvuII CAGCTG 1 cut(s) 670
RseI CAYNNNNRTG 1 cut(s) 965
SaqAI TTAA 7 cut(s) 33, 44, 234, 318, 636, 912, 979
SatI GCNGC 5 cut(s) 176, 474, 477, 486, 738
Sau3AI GATC 3 cut(s) 161, 361, 969
SchI GAGTC 2 cut(s) 772, 824
ScrFI CCNGG 1 cut(s) 447
SduI GDGCHC 1 cut(s) 259
SfaNI GCATC 3 cut(s) 112, 790, 883
SfcI CTRYAG 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 965
SpeI ACTAGT 2 cut(s) 88, 326
SphI GCATGC 1 cut(s) 618
Sse9I AATT 7 cut(s) 8, 238, 563, 704, 722, 808, 881
SseBI AGGCCT 1 cut(s) 394
SsiI CCGC 5 cut(s) 101, 119, 176, 477, 867
SspI AATATT 2 cut(s) 31, 656
SspMI CTAG 5 cut(s) 21, 89, 227, 327, 333
StuI AGGCCT 1 cut(s) 394
StyD4I CCNGG 1 cut(s) 445
StyI CCWWGG 2 cut(s) 275, 973
TaaI ACNGT 2 cut(s) 599, 629
TaiI ACGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 415
TasI AATT 7 cut(s) 8, 238, 563, 704, 722, 808, 881
TauI GCSGC 2 cut(s) 178, 479
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 7 cut(s) 33, 44, 234, 318, 636, 912, 979
Tru9I TTAA 7 cut(s) 33, 44, 234, 318, 636, 912, 979
TseFI GTSAC 2 cut(s) 371, 629
TseI GCWGC 3 cut(s) 473, 485, 737
Tsp45I GTSAC 2 cut(s) 371, 629
TspDTI ATGAA 4 cut(s) 735, 821, 940, 977
Van91I CCANNNNNTGG 1 cut(s) 297
XapI RAATTY 4 cut(s) 238, 563, 808, 881
XceI RCATGY 2 cut(s) 274, 618
XmiI GTMKAC 1 cut(s) 858
XspI CTAG 5 cut(s) 21, 89, 227, 327, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.