Rh1DG390400

Endoglucanase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
60897644 .. 60912977
15334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG390400.1

Sequence Viewer

Length: 1746 bp
ATGGATCTTGTAGGGGGTTACTATGATGCAGGAGACAATGTGAAGTTCAACTTTCCCATGGCCTTCACAACAACAATGTTGTCGTGGAGCGTGCTAGAGTTCGGAAATCTAATGGGATCGGACCTTCAACATGCTATGGAAGCTATAAGATGGGGGGCTGATTATTTTCTGAAAGCCACAAACGTTCCTGATTCGGTTGTGGGTGTTGTTGGCGATCCCATTGGTGACCACAGTTGTTCTCAAAGGCCTGAGGACATGGACACCCCAAGAACCTCTTATGTAGTCACCAAAGAAAAGCCAGGTTCAGAAGTCTCAGCCGAAATTGCAGCTGCATTTGCAGCTTCTTCCTTGGTGTTCAAAGATTCAGACAATAACTACTCTACTTTGCTTCTTAACCGATCAATGCAGGTCTTTGAATTTGCAGATACGTATAGGGGGTCTTACAATGACAGTATTGGGGAAGGAGCATGCCCCTTTTACTGTGATTTTAGTGGCTACATGGATGAATTGCTCTGGGGAGCTTCTTGGCTATACAAGGCAACCGGAGCAGCTGATTATTGGAATTATGTGAGAGAGAACATAGACAAAATGGAGTCCACTGTAATAAGAAATTTCAATGGGGATCCTGTTTCATACATAAATGGTGCTGTCACTGAATTTGGATGGGATTCAAAGCATTCCGGGATTAACGTACTTGTTTCTCAGTGGGTAATGACTGATCCGAACAATTCTAGTCCTTTTATTCTCAATGCGGATAAGTTTGTATGCTCGATTTTGCCAGAATCACCTACTCAAAAATCGGTCACATATTCACCAGGAGGGCTGTTGTTCAAACCAGGAGGAAGTAACCTGCAACATTCAACCTCAATATCATATCTTCTTATGGTTTATGCTGGGTACATGAAAGCTACGAACAAAGTCGTGAATTGTGGCAATAATGTGGTCATCACTCCAGATCGGCTAGTAAATTTCACCAAAGGACAGGTTGATTATATACTAGGAAGCAACCCATTAGGCATGTCATACATGGTCGGATTCGGGCCACAGTTTCCTCAGAAAATACATCACCGCGGTTCTGTTCTACCATCCCTTGATCAACACCCACAACACATCGATTGCCGCGGAGGAGACGTGTATTGGCAAAGCCAAGGTCCTAATCTGAATTTGCTAACAGGTGCAATTGTGGGAGGTCCTGCTGAAAATGATACGTTCCAAGATTCTCGATATAATGTTCCACAATCAGAGCCAACTACATACATCAACGCTCCTTTTAGTAAAATCATGTGTACCAATTTCCTTCTGTTAAGGCTGTTGATAGCAGCAGGGTTGTTGGCAATGGCAACCGCCGCAAAAGTGACTCCACATAACTACGCAGATGCTCTGTCGAAGTCCATTTTATTTTTTGAAGGCCAGAGATCTGGCAAGTTACCGAATTCTCAACGAATGAATTGGAGGAAAGATTCTGCCCTACATGATGGCAGCGATGTTCATAGGGATCTGGTGGGGGGTTACTATGATGCTGGTGACAATGTGAAGTTCAACTTTCCCATGGCGTTCACAACAACATTGTTGTCATGGAGCGTTCTAGAGTTTGGAGATTTGATGGGGTCTGAACTTCAACATGCTTTGGAAGCTATAAGATGGGCAACTGATTATTTTCTTAAAGCCACAAATGATCCTGGTTCAGTACGTAGTTGGCGTAGTAGGCGACCCCAGCGGAGATCATGCTTGTTGGCAAAGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

581

Amino Acids

64.22

Weight (kDa)

5.49

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 1 - 425 1.7e-125 Glycosyl hydrolase family 9
Glyco_hydro_9 PF00759 457 - 563 2e-42 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000663)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 397, 858
AccII CGCG 2 cut(s) 1071, 1122
AciI CCGC 8 cut(s) 752, 1069, 1071, 1120, 1122, 1344, 1347, 1717
AclI AACGTT 1 cut(s) 183
AclWI GGATC 8 cut(s) 12, 124, 209, 617, 630, 713, 1503, 1670
AcsI RAATTY 6 cut(s) 416, 610, 656, 967, 1162, 1432
AfaI GTAC 4 cut(s) 693, 899, 1288, 1689
AflIII ACRYGT 1 cut(s) 1131
AjiI CACGTC 1 cut(s) 1132
AjnI CCWGG 4 cut(s) 298, 814, 835, 1678
AluBI AGCT 7 cut(s) 143, 329, 341, 521, 551, 908, 1634
AluI AGCT 7 cut(s) 143, 329, 341, 521, 551, 908, 1634
Alw26I GTCTC 3 cut(s) 27, 316, 1122
AlwI GGATC 8 cut(s) 12, 124, 209, 617, 630, 713, 1503, 1670
AoxI GGCC 5 cut(s) 60, 245, 1040, 1408, 1740
ApeKI GCWGC 6 cut(s) 326, 329, 338, 548, 1319, 1479
ApoI RAATTY 6 cut(s) 416, 610, 656, 967, 1162, 1432
ArsI GACNNNNNNTTYG 2 cut(s) 1135, 1167
AspS9I GGNCC 4 cut(s) 121, 1040, 1151, 1190
AsuC2I CCSGG 1 cut(s) 682
AsuHPI GGTGA 7 cut(s) 236, 277, 777, 804, 964, 1058, 1535
AvaII GGWCC 3 cut(s) 121, 1151, 1190
AxyI CCTNAGG 1 cut(s) 249
BamHI GGATCC 1 cut(s) 622
BbvI GCAGC 6 cut(s) 316, 338, 350, 560, 1331, 1491
BccI CCATC 6 cut(s) 144, 657, 1093, 1469, 1597, 1635
BciT130I CCWGG 4 cut(s) 300, 816, 837, 1680
BclI TGATCA 1 cut(s) 1093
BcnI CCSGG 1 cut(s) 682
BcoDI GTCTC 3 cut(s) 27, 316, 1122
BfaI CTAG 5 cut(s) 95, 732, 962, 998, 1586
BfuAI ACCTGC 2 cut(s) 397, 858
BglII AGATCT 1 cut(s) 1415
BisI GCNGC 8 cut(s) 327, 330, 339, 549, 1120, 1320, 1347, 1480
BlsI GCNGC 8 cut(s) 328, 331, 340, 550, 1121, 1321, 1348, 1481
Bme1390I CCNGG 5 cut(s) 300, 682, 816, 837, 1680
Bme18I GGWCC 3 cut(s) 121, 1151, 1190
BmgBI CACGTC 1 cut(s) 1132
BmgT120I GGNCC 4 cut(s) 121, 1040, 1151, 1190
BmiI GGNNCC 1 cut(s) 624
BmrFI CCNGG 5 cut(s) 300, 682, 816, 837, 1680
BmsI GCATC 3 cut(s) 16, 1366, 1507
BpmI CTGGAG 1 cut(s) 936
BpuMI CCSGG 1 cut(s) 682
Bsa29I ATCGAT 1 cut(s) 1113
BsaAI YACGTR 2 cut(s) 429, 1691
BsaJI CCNNGG 6 cut(s) 57, 348, 1069, 1120, 1147, 1548
BsaWI WCCGGW 1 cut(s) 542
BsaXI ACNNNNNCTCC 4 cut(s) 24, 54, 1116, 1146
Bse21I CCTNAGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 1341
BseBI CCWGG 4 cut(s) 300, 816, 837, 1680
BseCI ATCGAT 1 cut(s) 1113
BseDI CCNNGG 6 cut(s) 57, 348, 1069, 1120, 1147, 1548
BseGI GGATG 3 cut(s) 508, 668, 1085
BseMI GCAATG 1 cut(s) 1341
BseMII CTCAG 4 cut(s) 240, 327, 716, 1067
BseRI GAGGAG 1 cut(s) 1140
BseXI GCAGC 6 cut(s) 316, 338, 350, 560, 1331, 1491
BseYI CCCAGC 2 cut(s) 893, 1713
Bsh1236I CGCG 2 cut(s) 1071, 1122
BshFI GGCC 5 cut(s) 62, 247, 1042, 1410, 1742
BshVI ATCGAT 1 cut(s) 1113
BsiSI CCGG 2 cut(s) 543, 681
BsmAI GTCTC 3 cut(s) 27, 316, 1122
BsmBI CGTCTC 1 cut(s) 1122
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 5 cut(s) 62, 247, 1042, 1410, 1742
Bsp19I CCATGG 2 cut(s) 57, 1548
BspACI CCGC 8 cut(s) 752, 1069, 1071, 1120, 1122, 1344, 1347, 1717
BspANI GGCC 5 cut(s) 62, 247, 1042, 1410, 1742
BspCNI CTCAG 4 cut(s) 241, 326, 715, 1066
BspDI ATCGAT 1 cut(s) 1113
BspFNI CGCG 2 cut(s) 1071, 1122
BspLI GGNNCC 1 cut(s) 624
BspMI ACCTGC 2 cut(s) 397, 858
BspPI GGATC 8 cut(s) 12, 124, 209, 617, 630, 713, 1503, 1670
BsrDI GCAATG 1 cut(s) 1341
BssECI CCNNGG 6 cut(s) 57, 348, 1069, 1120, 1147, 1548
BssT1I CCWWGG 4 cut(s) 57, 348, 1147, 1548
Bst2UI CCWGG 4 cut(s) 300, 816, 837, 1680
Bst4CI ACNGT 5 cut(s) 233, 452, 482, 601, 1047
BstBAI YACGTR 2 cut(s) 429, 1691
BstC8I GCNNGC 2 cut(s) 92, 469
BstDEI CTNAG 4 cut(s) 249, 313, 702, 1053
BstDSI CCRYGG 4 cut(s) 57, 1069, 1120, 1548
BstEII GGTNACC 1 cut(s) 224
BstF5I GGATG 3 cut(s) 508, 668, 1085
BstFNI CGCG 2 cut(s) 1071, 1122
BstMAI GTCTC 3 cut(s) 27, 316, 1122
BstMWI GCNNNNNNNGC 9 cut(s) 140, 323, 335, 338, 545, 1346, 1631, 1705, 1714
BstNI CCWGG 4 cut(s) 300, 816, 837, 1680
BstNSI RCATGY 4 cut(s) 134, 471, 1021, 1625
BstPI GGTNACC 1 cut(s) 224
BstSCI CCNGG 5 cut(s) 298, 680, 814, 835, 1678
BstSNI TACGTA 2 cut(s) 429, 1691
BstUI CGCG 2 cut(s) 1071, 1122
BstV1I GCAGC 6 cut(s) 316, 338, 350, 560, 1331, 1491
BstX2I RGATCY 4 cut(s) 4, 622, 1415, 1495
BstXI CCANNNNNNTGG 1 cut(s) 1418
BstYI RGATCY 4 cut(s) 4, 622, 1415, 1495
Bsu15I ATCGAT 1 cut(s) 1113
Bsu36I CCTNAGG 1 cut(s) 249
BsuRI GGCC 5 cut(s) 62, 247, 1042, 1410, 1742
BsuTUI ATCGAT 1 cut(s) 1113
BtgI CCRYGG 4 cut(s) 57, 1069, 1120, 1548
BtgZI GCGATG 1 cut(s) 1497
BtrI CACGTC 1 cut(s) 1132
BtsCI GGATG 3 cut(s) 508, 668, 1085
BtsIMutI CAGTG 3 cut(s) 597, 651, 710
BveI ACCTGC 2 cut(s) 397, 858
Cac8I GCNNGC 2 cut(s) 92, 469
Cfr13I GGNCC 4 cut(s) 121, 1040, 1151, 1190
Cfr42I CCGCGG 2 cut(s) 1072, 1123
ClaI ATCGAT 1 cut(s) 1113
Csp6I GTAC 4 cut(s) 692, 898, 1287, 1688
CviQI GTAC 4 cut(s) 692, 898, 1287, 1688
DdeI CTNAG 4 cut(s) 249, 313, 702, 1053
Eco105I TACGTA 2 cut(s) 429, 1691
Eco130I CCWWGG 4 cut(s) 57, 348, 1147, 1548
Eco147I AGGCCT 2 cut(s) 247, 1742
Eco47I GGWCC 3 cut(s) 121, 1151, 1190
Eco81I CCTNAGG 1 cut(s) 249
Eco91I GGTNACC 1 cut(s) 224
EcoO109I RGGNCCY 2 cut(s) 1151, 1190
EcoO65I GGTNACC 1 cut(s) 224
EcoRI GAATTC 1 cut(s) 1432
EcoRII CCWGG 4 cut(s) 298, 814, 835, 1678
EcoT14I CCWWGG 4 cut(s) 57, 348, 1147, 1548
ErhI CCWWGG 4 cut(s) 57, 348, 1147, 1548
Esp3I CGTCTC 1 cut(s) 1122
FalI AAGNNNNNCTT 6 cut(s) 35, 67, 259, 291, 1526, 1558
FbaI TGATCA 1 cut(s) 1093
Fnu4HI GCNGC 8 cut(s) 327, 330, 339, 549, 1120, 1320, 1347, 1480
FokI GGATG 3 cut(s) 515, 675, 1072
Fsp4HI GCNGC 8 cut(s) 327, 330, 339, 549, 1120, 1320, 1347, 1480
FspBI CTAG 5 cut(s) 95, 732, 962, 998, 1586
GluI GCNGC 8 cut(s) 327, 330, 339, 549, 1120, 1320, 1347, 1480
GsaI CCCAGC 2 cut(s) 897, 1717
GsuI CTGGAG 1 cut(s) 936
HaeIII GGCC 5 cut(s) 62, 247, 1042, 1410, 1742
HapII CCGG 2 cut(s) 543, 681
HinfI GANTC 9 cut(s) 191, 362, 593, 668, 782, 1035, 1217, 1357, 1460
HpaII CCGG 2 cut(s) 543, 681
HphI GGTGA 7 cut(s) 236, 277, 777, 804, 964, 1058, 1535
Hpy166II GTNNAC 3 cut(s) 597, 1287, 1557
Hpy188III TCNNGA 5 cut(s) 188, 922, 953, 1221, 1586
Hpy8I GTNNAC 3 cut(s) 597, 1287, 1557
HpyAV CCTTC 5 cut(s) 73, 134, 455, 1307, 1400
HpyCH4III ACNGT 5 cut(s) 233, 452, 482, 601, 1047
HpyCH4IV ACGT 6 cut(s) 183, 428, 690, 1131, 1208, 1690
HpyCH4V TGCA 8 cut(s) 29, 326, 332, 338, 406, 422, 853, 1178
HpyF10VI GCNNNNNNNGC 9 cut(s) 140, 323, 335, 338, 545, 1346, 1631, 1705, 1714
HpyF3I CTNAG 4 cut(s) 249, 313, 702, 1053
HpySE526I ACGT 6 cut(s) 183, 428, 690, 1131, 1208, 1690
Ksp22I TGATCA 1 cut(s) 1093
KspI CCGCGG 2 cut(s) 1072, 1123
LmnI GCTCC 6 cut(s) 87, 464, 518, 545, 1270, 1578
Lsp1109I GCAGC 6 cut(s) 316, 338, 350, 560, 1331, 1491
LweI GCATC 3 cut(s) 16, 1366, 1507
MaeI CTAG 5 cut(s) 95, 732, 962, 998, 1586
MaeII ACGT 6 cut(s) 183, 428, 690, 1131, 1208, 1690
MboII GAAGA 2 cut(s) 336, 869
MfeI CAATTG 1 cut(s) 1179
MflI RGATCY 4 cut(s) 4, 622, 1415, 1495
MlyI GAGTC 2 cut(s) 602, 1351
MmeI TCCRAC 1 cut(s) 1012
MnlI CCTC 9 cut(s) 244, 283, 812, 833, 874, 1062, 1118, 1181, 1446
MseI TTAA 4 cut(s) 393, 687, 1304, 1662
MspA1I CMGCKG 5 cut(s) 329, 551, 1071, 1122, 1717
MspI CCGG 2 cut(s) 543, 681
MspR9I CCNGG 5 cut(s) 300, 682, 816, 837, 1680
MunI CAATTG 1 cut(s) 1179
Mva1269I GAATGC 1 cut(s) 676
MvaI CCWGG 4 cut(s) 300, 816, 837, 1680
MvnI CGCG 2 cut(s) 1071, 1122
MwoI GCNNNNNNNGC 9 cut(s) 140, 323, 335, 338, 545, 1346, 1631, 1705, 1714
NciI CCSGG 1 cut(s) 682
NcoI CCATGG 2 cut(s) 57, 1548
NlaIV GGNNCC 1 cut(s) 624
NmuCI GTSAC 6 cut(s) 224, 283, 649, 802, 1354, 1523
NspI RCATGY 4 cut(s) 134, 471, 1021, 1625
PaeI GCATGC 1 cut(s) 471
PceI AGGCCT 2 cut(s) 247, 1742
PcsI WCGNNNNNNNCGW 1 cut(s) 1696
PctI GAATGC 1 cut(s) 676
PfeI GAWTC 7 cut(s) 191, 362, 668, 782, 1035, 1217, 1460
PfoI TCCNGGA 1 cut(s) 680
PkrI GCNGC 8 cut(s) 328, 331, 340, 550, 1121, 1321, 1348, 1481
PleI GAGTC 2 cut(s) 601, 1351
PpsI GAGTC 2 cut(s) 601, 1351
Ppu21I YACGTR 2 cut(s) 429, 1691
PpuMI RGGWCCY 2 cut(s) 1151, 1190
Psp1406I AACGTT 1 cut(s) 183
Psp5II RGGWCCY 2 cut(s) 1151, 1190
Psp6I CCWGG 4 cut(s) 298, 814, 835, 1678
PspEI GGTNACC 1 cut(s) 224
PspFI CCCAGC 2 cut(s) 893, 1713
PspGI CCWGG 4 cut(s) 298, 814, 835, 1678
PspN4I GGNNCC 1 cut(s) 624
PspPI GGNCC 4 cut(s) 121, 1040, 1151, 1190
PspPPI RGGWCCY 2 cut(s) 1151, 1190
PsuI RGATCY 4 cut(s) 4, 622, 1415, 1495
PvuII CAGCTG 2 cut(s) 329, 551
RsaI GTAC 4 cut(s) 693, 899, 1288, 1689
RsaNI GTAC 4 cut(s) 692, 898, 1287, 1688
SacII CCGCGG 2 cut(s) 1072, 1123
SaqAI TTAA 4 cut(s) 393, 687, 1304, 1662
SatI GCNGC 8 cut(s) 327, 330, 339, 549, 1120, 1320, 1347, 1480
Sau96I GGNCC 4 cut(s) 121, 1040, 1151, 1190
SchI GAGTC 2 cut(s) 602, 1351
ScrFI CCNGG 5 cut(s) 300, 682, 816, 837, 1680
SfaNI GCATC 3 cut(s) 16, 1366, 1507
Sfr303I CCGCGG 2 cut(s) 1072, 1123
SgrBI CCGCGG 2 cut(s) 1072, 1123
SinI GGWCC 3 cut(s) 121, 1151, 1190
SnaBI TACGTA 2 cut(s) 429, 1691
SphI GCATGC 1 cut(s) 471
SseBI AGGCCT 2 cut(s) 247, 1742
SsiI CCGC 8 cut(s) 752, 1069, 1071, 1120, 1122, 1344, 1347, 1717
SspMI CTAG 5 cut(s) 95, 732, 962, 998, 1586
StuI AGGCCT 2 cut(s) 247, 1742
StyD4I CCNGG 5 cut(s) 298, 680, 814, 835, 1678
StyI CCWWGG 4 cut(s) 57, 348, 1147, 1548
TaaI ACNGT 5 cut(s) 233, 452, 482, 601, 1047
TaiI ACGT 6 cut(s) 186, 431, 693, 1134, 1211, 1693
TaqI TCGA 4 cut(s) 770, 1113, 1222, 1385
TaqII GACCGA 1 cut(s) 790
TauI GCSGC 2 cut(s) 1122, 1349
TfiI GAWTC 7 cut(s) 191, 362, 668, 782, 1035, 1217, 1460
Tru1I TTAA 4 cut(s) 393, 687, 1304, 1662
Tru9I TTAA 4 cut(s) 393, 687, 1304, 1662
TscAI CASTG 3 cut(s) 604, 658, 710
TseFI GTSAC 6 cut(s) 224, 283, 649, 802, 1354, 1523
TseI GCWGC 6 cut(s) 326, 329, 338, 548, 1319, 1479
Tsp45I GTSAC 6 cut(s) 224, 283, 649, 802, 1354, 1523
TspDTI ATGAA 5 cut(s) 519, 621, 917, 1460, 1478
TspRI CASTG 3 cut(s) 604, 658, 710
VpaK11BI GGWCC 3 cut(s) 121, 1151, 1190
XapI RAATTY 6 cut(s) 416, 610, 656, 967, 1162, 1432
XbaI TCTAGA 1 cut(s) 1585
XceI RCATGY 4 cut(s) 134, 471, 1021, 1625
XspI CTAG 5 cut(s) 95, 732, 962, 998, 1586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.