Rorug01G0059600

Endoglucanase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
9811991 .. 9812371
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0059600.1

Sequence Viewer

Length: 381 bp
ATGAAGTATACCTTAGCATTATCTTGCAGACTCCTCTTAAACATCGAGGATCCACAAGTGATTGCCAAGCTAGAGAAACCCATTCGGTATATAAATGTGGGGCTCGTTTCATTGCCAGTAGATTTGCCGGGCACCAACTTCAATAGAGCCATCAAAGCATCCAAGAAAATGAAGAAGGAAATTGAGAGTATGGTTGTGAAGAGGAAGTTAGATCTCATGAATCTCAATTTGATTGAACGTGAACAATTAGCTAATGCACCACAAGATCTAATGTCTAGCTGGCTCATGGAGAGATATAGCGATGGAGAAGAGATGACGGAAGCGGACATTGCCGAAAAGTTGTGTGGTATAATACTAGTCGGTTATGACCCCAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.32

Weight (kDa)

5.55

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000663)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 8
AciI CCGC 1 cut(s) 323
AclWI GGATC 2 cut(s) 44, 57
AgsI TTSAA 2 cut(s) 142, 236
AhlI ACTAGT 1 cut(s) 355
AluBI AGCT 3 cut(s) 70, 251, 279
AluI AGCT 3 cut(s) 70, 251, 279
AlwI GGATC 2 cut(s) 44, 57
AsuC2I CCSGG 1 cut(s) 129
BaeGI GKGCMC 1 cut(s) 134
BamHI GGATCC 1 cut(s) 49
BanI GGYRCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 105
BccI CCATC 2 cut(s) 158, 296
BcnI CCSGG 1 cut(s) 129
BcuI ACTAGT 1 cut(s) 355
BfaI CTAG 3 cut(s) 71, 276, 356
BglII AGATCT 2 cut(s) 211, 265
Bme1390I CCNGG 1 cut(s) 129
BmiI GGNNCC 2 cut(s) 51, 133
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 167
Bpu10I CCTNAGC 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 116
Bse3DI GCAATG 2 cut(s) 110, 327
BseGI GGATG 1 cut(s) 158
BseMI GCAATG 2 cut(s) 110, 327
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 131
BsiSI CCGG 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 105, 134
Bsp143I GATC 3 cut(s) 49, 211, 265
BspACI CCGC 1 cut(s) 323
BspHI TCATGA 1 cut(s) 216
BspLI GGNNCC 2 cut(s) 51, 133
BspPI GGATC 2 cut(s) 44, 57
BspT107I GGYRCC 1 cut(s) 131
BsrDI GCAATG 2 cut(s) 110, 327
BsrI ACTGG 1 cut(s) 116
BssMI GATC 3 cut(s) 49, 211, 265
BssNAI GTATAC 1 cut(s) 9
Bst1107I GTATAC 1 cut(s) 9
Bst6I CTCTTC 2 cut(s) 194, 303
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 13
BstF5I GGATG 1 cut(s) 158
BstKTI GATC 3 cut(s) 52, 214, 268
BstMBI GATC 3 cut(s) 49, 211, 265
BstMWI GCNNNNNNNGC 2 cut(s) 155, 329
BstSCI CCNGG 1 cut(s) 127
BstSLI GKGCMC 1 cut(s) 134
BstX2I RGATCY 3 cut(s) 49, 211, 265
BstYI RGATCY 3 cut(s) 49, 211, 265
BstZ17I GTATAC 1 cut(s) 9
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 281
CciI TCATGA 1 cut(s) 216
CviAII CATG 2 cut(s) 217, 286
CviJI RGCY 6 cut(s) 70, 103, 149, 251, 279, 283
CviKI_1 RGCY 6 cut(s) 70, 103, 149, 251, 279, 283
DdeI CTNAG 1 cut(s) 13
DpnI GATC 3 cut(s) 51, 213, 267
DpnII GATC 3 cut(s) 49, 211, 265
Eam1104I CTCTTC 2 cut(s) 194, 303
EarI CTCTTC 2 cut(s) 194, 303
Eco24I GRGCYC 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 2 cut(s) 220, 289
FaiI YATR 9 cut(s) 9, 90, 92, 191, 218, 287, 297, 350, 366
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 2 cut(s) 216, 285
FblI GTMKAC 1 cut(s) 8
FokI GGATG 1 cut(s) 145
FriOI GRGCYC 1 cut(s) 105
FspBI CTAG 3 cut(s) 71, 276, 356
HapII CCGG 1 cut(s) 128
Hin1II CATG 2 cut(s) 220, 289
HinfI GANTC 2 cut(s) 30, 220
HpaII CCGG 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 9, 242
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 2 cut(s) 9, 242
HpyAV CCTTC 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 27, 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 329
HpyF3I CTNAG 1 cut(s) 13
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 2 cut(s) 220, 289
Kzo9I GATC 3 cut(s) 49, 211, 265
LpnPI CCDG 3 cut(s) 129, 141, 265
LweI GCATC 1 cut(s) 167
MaeI CTAG 3 cut(s) 71, 276, 356
MaeII ACGT 1 cut(s) 238
MalI GATC 3 cut(s) 51, 213, 267
MboI GATC 3 cut(s) 49, 211, 265
MboII GAAGA 3 cut(s) 184, 211, 320
MflI RGATCY 3 cut(s) 49, 211, 265
MhlI GDGCHC 2 cut(s) 105, 134
MluCI AATT 4 cut(s) 180, 226, 245, 376
MlyI GAGTC 1 cut(s) 24
MnlI CCTC 3 cut(s) 40, 44, 195
MseI TTAA 2 cut(s) 38, 379
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 155, 329
NciI CCSGG 1 cut(s) 129
NdeII GATC 3 cut(s) 49, 211, 265
NlaIII CATG 2 cut(s) 220, 289
NlaIV GGNNCC 2 cut(s) 51, 133
PagI TCATGA 1 cut(s) 216
PfeI GAWTC 1 cut(s) 220
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 51, 133
PsuI RGATCY 3 cut(s) 49, 211, 265
SaqAI TTAA 2 cut(s) 38, 379
Sau3AI GATC 3 cut(s) 49, 211, 265
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 2 cut(s) 105, 134
SetI ASST 5 cut(s) 14, 72, 241, 253, 281
SfaNI GCATC 1 cut(s) 167
SpeI ACTAGT 1 cut(s) 355
Sse9I AATT 4 cut(s) 180, 226, 245, 376
SsiI CCGC 1 cut(s) 323
SspMI CTAG 3 cut(s) 71, 276, 356
StyD4I CCNGG 1 cut(s) 127
TaiI ACGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 45
TasI AATT 4 cut(s) 180, 226, 245, 376
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 2 cut(s) 38, 379
Tru9I TTAA 2 cut(s) 38, 379
TspDTI ATGAA 4 cut(s) 17, 99, 185, 233
TspGWI ACGGA 1 cut(s) 332
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 3 cut(s) 71, 276, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.