Rmu_sc0037664.1_g000001

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037664.1
OG0000663
Physical Location & Seq
Reverse (-)
399 .. 990
592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037664.1_g000001.1.cds

Sequence Viewer

Length: 510 bp
atgacagctaactctgggagtcctggtgcaagaatctctccattcccagcttcaattaaagttgttgatactagcagtactagcaatgtctgccacgccttcccacaactacgcggatcgatatacgctttgtccaagggtattttgtttttcgaagggcagaggtcgggatcgttaccgagtacccaacgagtgacttggaggaaagattcagctctccattatggcaatgacgttcatatggatctggtagggggttactatgatgctggagacaacgtgaagttcaactttcccatggcattcacaacaacaatgttgtcttggagtgttctagagtttggtgaatcaatgggctcagaacttccatatgcttcggaagctataagatggggcactgattacttgcttaaatccacagatgcttctggttctgttgccggctttgttggcgaccccgtaggcgaccacacttgttgggaaagacccgaagatatggacactccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

169

Amino Acids

18.32

Weight (kDa)

4.91

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23210 AT1G70710
fragaria_vesca FvH4_4g33940 FvH4_6g41450 FvH4_7g27772 FvH4_7g27773 FvH4_7g27774 FvH4_7g27775
malus_domestica MD00G1036700.v1.1 MD07G1097500.v1.1 MD11G1195000.v1.1 MD16G1021500.v1.1
prunus_persica Prupe.1G331000_v2.0.a1 Prupe.1G331000_v2.0.a1 Prupe.2G121700_v2.0.a1 Prupe.2G278700_v2.0.a1 Prupe.2G278800_v2.0.a1
pyrus_communis pycom01g19480 pycom03g11560 pycom06g08760 pycom16g01920
rosa_chinensis RchiOBHm_Chr1g0374571 RchiOBHm_Chr1g0374581 RchiOBHm_Chr1g0374591 RchiOBHm_Chr1g0374601 RchiOBHm_Chr1g0374611 RchiOBHm_Chr2g0157011 RchiOBHm_Chr4g0443471
rosa_laevigata RLG00000005926 RLG00000026724 RLG00000026725 RLG00000026726 RLG00000026727
rosa_multiflora Rmu_co8114132.1_g000001 Rmu_sc0004947.1_g000005 Rmu_sc0004947.1_g000006 Rmu_sc0004947.1_g000007 Rmu_sc0004947.1_g000008 Rmu_sc0009670.1_g000003 Rmu_sc0034696.1_g000001 Rmu_sc0037664.1_g000001 Rmu_ssc0000408.1_g000014
rosa_roxburghii Rroxscaffold_4G00283360 Rroxscaffold_4G00283370 Rroxscaffold_4G00283380 Rroxscaffold_5G00384020
rosa_rugosa Rorug01G0059600 Rorug01G0384100 Rorug01G0384200 Rorug01G0384200 Rorug02G0457500 Rorug04G0346500 Rorug04G0346500 Rorug07G0215300
rosa_samantha Rh1AG395000 Rh1AG395100 Rh1AG395200 Rh1AG395400 Rh1CG372800 Rh1CG372900 Rh1CG373000 Rh1CG373100 Rh1DG390300 Rh1DG390400 Rh1DG390500 Rh1DG390600 Rh2BG536600 Rh2DG545500 Rh4AG402000 Rh4CG429100 Rh4DG409100
rosa_wichuraiana Rw1G035030 Rw1G035040 Rw1G035050 Rw1G035060 Rw4G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AciI CCGC 1 cut(s) 114
AclWI GGATC 3 cut(s) 124, 178, 252
AfaI GTAC 2 cut(s) 79, 184
AgsI TTSAA 2 cut(s) 54, 289
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 4 cut(s) 8, 50, 215, 383
AluI AGCT 4 cut(s) 8, 50, 215, 383
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 3 cut(s) 124, 178, 252
AsuHPI GGTGA 1 cut(s) 356
AsuII TTCGAA 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 398
BanII GRGCYC 1 cut(s) 359
BccI CCATC 1 cut(s) 384
BciT130I CCWGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 267
BfaI CTAG 3 cut(s) 72, 81, 335
BmcAI AGTACT 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 2 cut(s) 256, 412
BpmI CTGGAG 1 cut(s) 291
Bpu14I TTCGAA 1 cut(s) 153
Bsa29I ATCGAT 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 135, 297
BsaXI ACNNNNNCTCC 4 cut(s) 10, 40, 264, 294
Bse118I RCCGGY 1 cut(s) 440
Bse3DI GCAATG 2 cut(s) 91, 235
BseBI CCWGG 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 135, 297
BseMI GCAATG 2 cut(s) 91, 235
BseMII CTCAG 1 cut(s) 372
BseSI GKGCMC 1 cut(s) 398
BseYI CCCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 114
BshVI ATCGAT 1 cut(s) 119
BsiSI CCGG 1 cut(s) 441
BsmAI GTCTC 1 cut(s) 267
BsmI GAATGC 1 cut(s) 302
Bsp119I TTCGAA 1 cut(s) 153
Bsp1286I GDGCHC 2 cut(s) 359, 398
Bsp143I GATC 3 cut(s) 116, 170, 244
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 371
BspDI ATCGAT 1 cut(s) 119
BspFNI CGCG 1 cut(s) 114
BspPI GGATC 3 cut(s) 124, 178, 252
BspT104I TTCGAA 1 cut(s) 153
BsrDI GCAATG 2 cut(s) 91, 235
BsrFI RCCGGY 1 cut(s) 440
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 2 cut(s) 135, 297
BssMI GATC 3 cut(s) 116, 170, 244
BssT1I CCWWGG 2 cut(s) 135, 297
Bst2UI CCWGG 1 cut(s) 24
BstAPI GCANNNNNTGC 1 cut(s) 90
BstBI TTCGAA 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 442
BstDEI CTNAG 1 cut(s) 358
BstDSI CCRYGG 1 cut(s) 297
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 3 cut(s) 119, 173, 247
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 3 cut(s) 116, 170, 244
BstMWI GCNNNNNNNGC 4 cut(s) 81, 90, 380, 450
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 398
BstUI CGCG 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
Bsu15I ATCGAT 1 cut(s) 119
BsuTUI ATCGAT 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 1 cut(s) 442
Cfr10I RCCGGY 1 cut(s) 440
ClaI ATCGAT 1 cut(s) 119
Csp6I GTAC 2 cut(s) 78, 183
CspCI CAANNNNNGTGG 2 cut(s) 458, 493
CviAII CATG 1 cut(s) 298
CviJI RGCY 6 cut(s) 8, 50, 215, 357, 383, 444
CviKI_1 RGCY 6 cut(s) 8, 50, 215, 357, 383, 444
CviQI GTAC 2 cut(s) 78, 183
DdeI CTNAG 1 cut(s) 358
DpnI GATC 3 cut(s) 118, 172, 246
DpnII GATC 3 cut(s) 116, 170, 244
Eco130I CCWWGG 2 cut(s) 135, 297
Eco24I GRGCYC 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 2 cut(s) 135, 297
EcoT38I GRGCYC 1 cut(s) 359
ErhI CCWWGG 2 cut(s) 135, 297
FaeI CATG 1 cut(s) 301
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 1 cut(s) 297
FauNDI CATATG 2 cut(s) 240, 370
FriOI GRGCYC 1 cut(s) 359
FspBI CTAG 3 cut(s) 72, 81, 335
GsaI CCCAGC 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 291
HapII CCGG 1 cut(s) 441
Hin1II CATG 1 cut(s) 301
HinfI GANTC 4 cut(s) 19, 33, 209, 347
HpaII CCGG 1 cut(s) 441
HphI GGTGA 1 cut(s) 356
Hpy188I TCNGA 2 cut(s) 361, 379
Hpy188III TCNNGA 2 cut(s) 168, 335
HpyAV CCTTC 2 cut(s) 109, 149
HpyCH4IV ACGT 2 cut(s) 234, 279
HpyCH4V TGCA 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 90, 380, 450
HpyF3I CTNAG 1 cut(s) 358
HpySE526I ACGT 2 cut(s) 234, 279
Hsp92II CATG 1 cut(s) 301
KroI GCCGGC 1 cut(s) 440
KroNI GCCGGC 1 cut(s) 442
Kzo9I GATC 3 cut(s) 116, 170, 244
LpnPI CCDG 7 cut(s) 9, 36, 60, 233, 255, 414, 454
LweI GCATC 2 cut(s) 256, 412
MaeI CTAG 3 cut(s) 72, 81, 335
MaeII ACGT 2 cut(s) 234, 279
MaeIII GTNAC 3 cut(s) 174, 193, 257
MalI GATC 3 cut(s) 118, 172, 246
MboI GATC 3 cut(s) 116, 170, 244
MboII GAAGA 1 cut(s) 503
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 2 cut(s) 359, 398
MluCI AATT 1 cut(s) 54
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 2 cut(s) 156, 195
MroNI GCCGGC 1 cut(s) 440
MseI TTAA 2 cut(s) 57, 411
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 1 cut(s) 24
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 4 cut(s) 81, 90, 380, 450
NaeI GCCGGC 1 cut(s) 442
NcoI CCATGG 1 cut(s) 297
NdeI CATATG 2 cut(s) 240, 370
NdeII GATC 3 cut(s) 116, 170, 244
NgoMIV GCCGGC 1 cut(s) 440
NlaIII CATG 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 193
NspV TTCGAA 1 cut(s) 153
PctI GAATGC 1 cut(s) 302
PdiI GCCGGC 1 cut(s) 442
PfeI GAWTC 3 cut(s) 33, 209, 347
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 1 cut(s) 22
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 2 cut(s) 79, 184
RsaNI GTAC 2 cut(s) 78, 183
SaqAI TTAA 2 cut(s) 57, 411
Sau3AI GATC 3 cut(s) 116, 170, 244
ScaI AGTACT 1 cut(s) 79
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 2 cut(s) 359, 398
SetI ASST 7 cut(s) 10, 52, 167, 217, 237, 282, 385
SfaNI GCATC 2 cut(s) 256, 412
SfuI TTCGAA 1 cut(s) 153
Sse9I AATT 1 cut(s) 54
SsiI CCGC 1 cut(s) 114
SspMI CTAG 3 cut(s) 72, 81, 335
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 2 cut(s) 135, 297
TaiI ACGT 2 cut(s) 237, 282
TaqI TCGA 2 cut(s) 119, 153
TasI AATT 1 cut(s) 54
TatI WGTACW 1 cut(s) 77
TfiI GAWTC 3 cut(s) 33, 209, 347
Tru1I TTAA 2 cut(s) 57, 411
Tru9I TTAA 2 cut(s) 57, 411
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 227
TspRI CASTG 1 cut(s) 403
XbaI TCTAGA 1 cut(s) 334
XspI CTAG 3 cut(s) 72, 81, 335
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.