FvH4_7g27772

Endoglucanase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
20707713 .. 20710901
3189 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27772.t1

Sequence Viewer

Length: 1509 bp
ATGAGTTCGTTTGGGAGGTTGAGGTTGGTGGTTTTAGTAGCGGCGATGATGGTGGCGATGGTGGTGAAGGCTTCGCAGGACTACGGGGATGCATTGACGAAGAGCATATTGTTCTTTGAAGGCCAGAGGTCAGGAAAGATACCCTCTACTCAGAGAATGACTTGGAGGAAAGATTCTGCACTTCATGACGGACTTCAGATTGGTGTTGATCTAGTGGGGGGTTACTATGATGCCGGTGACAATGTGAAGTTCAGCTTTCCAATGGCATTCTCAACAACAATGCTGGCATGGAGTGTGTTAGAGTTCGGGAAGGACATGGGTGCAGACCTACCCCGTGCACTTGATGCCATTCGATGGGGAACTGACTACTTCCTCAAAGCCACAAGCATTCCTGGCTTTGTGTTTGCCCAAGTTGGTGAACCTTATGACGACCACAATTGTTGGGAAAGGCCTGAGGACATGGACACCCCGAGAAACCCCTATGCAGTGAGCAAACAGTTTCCGGGTTCCGAACTCTCGGCAGAGATTGCAGCCGCCCTGGCAGCCTCTTCCATGGTTTTTAAGCATGTTGATCTGCAGTACTCTGCAAGGCTTCTCAAACGGGCTAGAATGGTATTTGAGTTTGCAGTAACATACCAGGGCTCCTATAATGATGCTCTTGGACCTTGGGTTTGTCCATTTTATTGTGATTTTAGTGGCTATGAGGACGAACTGATTTGGGGAGCAGCATGGTTGTTCAAGGCAACTAAGATCCCTACATACTCGAAGTATGTATTGGACAATGTACACAAGCTGGAAAAATCTGTCATGAGAAATGTAAATGGTCTGTCATATTCTTCTGTAGGTGGAAGCTTTACGGAGTTTGGATGGGATACAAAGCACGCAGGCATCAATGTACTTGCTTCCAAGTTGTTCATGTCTAGCATCGACATTGGTTCTAGTCCTTTCGTTATCAATTCCGACAAGTTCATATGCAGTTTGTTACCCGACTCGCCAACCCTATCAGTCTCATACTCTCCAGGTGGGCTTCTGTTTAAACCTGGAGGAAGTAATCTGCAGCACGCAACAACTCTGTCATTTCTCTTGGTTGTTTATTCTCGCTATCTGAGCAAATCCAATAGAGTAGTTCACTGTAACAATGTTGTTGCAACTCCAGCTAGACTTGTTCAAATTGCAAAAGGCCAGGTGGATTACATACTAGGAAGTAACCCATTGAACATGTCATATATGGTCGGATACGGCAAAAAGTTTCCCCAGAGAATTCATCACCGGGGATCATCGTTACCGTCGGTAGGTCAACACCCTCAACAAATTGGTTGTAAAGAAGGAAGCGTTTACTTTGGCAGCAGTAATCCTAACCCTAATGAGCTAACTGGGGCTGTTGTCGGAGGTCCAGATATAAAGGATGCATATACAGATTCTCGAGTGGATTTTGTGCATTCCGAGCCAACCACATACATCAATGCACCATTCGTAGGCGTCTTGGCTTACTTCAAATCGCATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

503

Amino Acids

55.22

Weight (kDa)

7.64

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 28 - 495 7.5e-147 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000663)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 354
AciI CCGC 2 cut(s) 41, 534
AclWI GGATC 2 cut(s) 745, 1282
AcsI RAATTY 1 cut(s) 1260
AcuI CTGAAG 1 cut(s) 179
AcyI GRCGYC 1 cut(s) 1479
AfaI GTAC 3 cut(s) 581, 786, 897
AfiI CCNNNNNNNGG 3 cut(s) 354, 1292, 1475
AflIII ACRYGT 1 cut(s) 1218
AgsI TTSAA 5 cut(s) 119, 739, 1169, 1216, 1495
AjnI CCWGG 6 cut(s) 391, 537, 636, 1018, 1039, 1182
AjuI GAANNNNNNNTTGG 2 cut(s) 758, 790
AluBI AGCT 5 cut(s) 255, 793, 852, 1157, 1369
AluI AGCT 5 cut(s) 255, 793, 852, 1157, 1369
Alw21I GWGCWC 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 1012
Alw44I GTGCAC 1 cut(s) 336
AlwI GGATC 2 cut(s) 745, 1282
Ama87I CYCGRG 2 cut(s) 469, 1422
AoxI GGCC 3 cut(s) 121, 449, 1180
ApaLI GTGCAC 1 cut(s) 336
ApeKI GCWGC 5 cut(s) 530, 542, 725, 1057, 1344
ApoI RAATTY 1 cut(s) 1260
ArsI GACNNNNNNTTYG 2 cut(s) 654, 686
AspS9I GGNCC 2 cut(s) 662, 1391
AsuC2I CCSGG 2 cut(s) 504, 1271
AsuHPI GGTGA 4 cut(s) 76, 248, 428, 1259
AvaI CYCGRG 2 cut(s) 469, 1422
AvaII GGWCC 2 cut(s) 662, 1391
AxyI CCTNAGG 1 cut(s) 453
BaeGI GKGCMC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 644
Bbv12I GWGCWC 1 cut(s) 340
BbvI GCAGC 5 cut(s) 542, 554, 737, 1069, 1356
BccI CCATC 4 cut(s) 43, 52, 348, 861
BceAI ACGGC 1 cut(s) 1255
BciT130I CCWGG 6 cut(s) 393, 539, 638, 1020, 1041, 1184
BciVI GTATCC 2 cut(s) 865, 1229
BcnI CCSGG 2 cut(s) 504, 1271
BcoDI GTCTC 1 cut(s) 1012
BfaI CTAG 6 cut(s) 212, 606, 921, 939, 1158, 1199
BfmI CTRYAG 3 cut(s) 575, 840, 1055
BfuI GTATCC 2 cut(s) 865, 1229
BglI GCCNNNNNGGC 1 cut(s) 539
BisI GCNGC 7 cut(s) 42, 531, 534, 543, 726, 1058, 1345
BlsI GCNGC 7 cut(s) 43, 532, 535, 544, 727, 1059, 1346
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 8 cut(s) 393, 504, 539, 638, 1020, 1041, 1184, 1271
Bme18I GGWCC 2 cut(s) 662, 1391
BmeT110I CYCGRG 2 cut(s) 469, 1422
BmgT120I GGNCC 2 cut(s) 662, 1391
BmiI GGNNCC 2 cut(s) 508, 643
BmrFI CCNGG 8 cut(s) 393, 504, 539, 638, 1020, 1041, 1184, 1271
BmrI ACTGGG 1 cut(s) 1383
BmsI GCATC 7 cut(s) 79, 220, 334, 643, 897, 933, 1396
BmuI ACTGGG 1 cut(s) 1383
BpmI CTGGAG 3 cut(s) 1002, 1062, 1137
BpuMI CCSGG 2 cut(s) 504, 1271
BsaHI GRCGYC 1 cut(s) 1479
BsaJI CCNNGG 5 cut(s) 537, 552, 637, 665, 1270
BsaXI ACNNNNNCTCC 2 cut(s) 626, 656
Bsc4I CCNNNNNNNGG 3 cut(s) 354, 1292, 1475
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 1378
Bse21I CCTNAGG 1 cut(s) 453
BseBI CCWGG 6 cut(s) 393, 539, 638, 1020, 1041, 1184
BseDI CCNNGG 5 cut(s) 537, 552, 637, 665, 1270
BseGI GGATG 4 cut(s) 94, 872, 1411, 1501
BseLI CCNNNNNNNGG 3 cut(s) 354, 1292, 1475
BseMII CTCAG 3 cut(s) 164, 444, 1097
BseNI ACTGG 1 cut(s) 1378
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 5 cut(s) 542, 554, 737, 1069, 1356
BsgI GTGCAG 2 cut(s) 162, 342
BshFI GGCC 3 cut(s) 123, 451, 1182
BsiHKAI GWGCWC 1 cut(s) 340
BsiHKCI CYCGRG 2 cut(s) 469, 1422
BsiSI CCGG 3 cut(s) 234, 503, 1270
BslI CCNNNNNNNGG 3 cut(s) 354, 1292, 1475
BsmAI GTCTC 1 cut(s) 1012
BsmI GAATGC 3 cut(s) 266, 387, 1438
BsnI GGCC 3 cut(s) 123, 451, 1182
BsoBI CYCGRG 2 cut(s) 469, 1422
Bsp1286I GDGCHC 2 cut(s) 340, 644
Bsp1407I TGTACA 1 cut(s) 784
Bsp143I GATC 4 cut(s) 208, 571, 750, 1274
Bsp19I CCATGG 1 cut(s) 552
BspACI CCGC 2 cut(s) 41, 534
BspANI GGCC 3 cut(s) 123, 451, 1182
BspCNI CTCAG 3 cut(s) 163, 445, 1098
BspHI TCATGA 2 cut(s) 184, 807
BspLI GGNNCC 2 cut(s) 508, 643
BspMAI CTGCAG 2 cut(s) 579, 1059
BspPI GGATC 2 cut(s) 745, 1282
BspQI GCTCTTC 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 233
BsrGI TGTACA 1 cut(s) 784
BsrI ACTGG 1 cut(s) 1378
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 5 cut(s) 537, 552, 637, 665, 1270
BssMI GATC 4 cut(s) 208, 571, 750, 1274
BssNI GRCGYC 1 cut(s) 1479
BssT1I CCWWGG 2 cut(s) 552, 665
Bst2UI CCWGG 6 cut(s) 393, 539, 638, 1020, 1041, 1184
Bst4CI ACNGT 3 cut(s) 498, 1133, 1287
Bst6I CTCTTC 2 cut(s) 95, 553
BstACI GRCGYC 1 cut(s) 1479
BstAPI GCANNNNNTGC 2 cut(s) 344, 527
BstAUI TGTACA 1 cut(s) 784
BstC8I GCNNGC 4 cut(s) 285, 882, 886, 1062
BstDEI CTNAG 4 cut(s) 150, 453, 747, 1106
BstDSI CCRYGG 1 cut(s) 552
BstF5I GGATG 4 cut(s) 94, 872, 1411, 1501
BstKTI GATC 4 cut(s) 211, 574, 753, 1277
BstMAI GTCTC 1 cut(s) 1012
BstMBI GATC 4 cut(s) 208, 571, 750, 1274
BstMWI GCNNNNNNNGC 8 cut(s) 344, 393, 527, 539, 542, 1107, 1154, 1444
BstNI CCWGG 6 cut(s) 393, 539, 638, 1020, 1041, 1184
BstNSI RCATGY 2 cut(s) 569, 1222
BstSCI CCNGG 8 cut(s) 391, 502, 537, 636, 1018, 1039, 1182, 1269
BstSFI CTRYAG 3 cut(s) 575, 840, 1055
BstSLI GKGCMC 1 cut(s) 340
BstV1I GCAGC 5 cut(s) 542, 554, 737, 1069, 1356
BstX2I RGATCY 1 cut(s) 750
BstYI RGATCY 1 cut(s) 750
Bsu36I CCTNAGG 1 cut(s) 453
BsuI GTATCC 2 cut(s) 865, 1229
BsuRI GGCC 3 cut(s) 123, 451, 1182
BtgI CCRYGG 1 cut(s) 552
BtgZI GCGATG 2 cut(s) 59, 71
BtsCI GGATG 4 cut(s) 94, 872, 1411, 1501
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 2 cut(s) 492, 1129
Cac8I GCNNGC 4 cut(s) 285, 882, 886, 1062
CciI TCATGA 2 cut(s) 184, 807
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 662, 1391
CseI GACGC 1 cut(s) 1468
Csp6I GTAC 3 cut(s) 580, 785, 896
CspCI CAANNNNNGTGG 2 cut(s) 422, 457
CviQI GTAC 3 cut(s) 580, 785, 896
DdeI CTNAG 4 cut(s) 150, 453, 747, 1106
DpnI GATC 4 cut(s) 210, 573, 752, 1276
DpnII GATC 4 cut(s) 208, 571, 750, 1274
DraI TTTAAA 1 cut(s) 1036
Eam1104I CTCTTC 2 cut(s) 95, 553
EarI CTCTTC 2 cut(s) 95, 553
Eco130I CCWWGG 2 cut(s) 552, 665
Eco147I AGGCCT 1 cut(s) 451
Eco24I GRGCYC 1 cut(s) 644
Eco47I GGWCC 2 cut(s) 662, 1391
Eco57I CTGAAG 1 cut(s) 179
Eco81I CCTNAGG 1 cut(s) 453
Eco88I CYCGRG 2 cut(s) 469, 1422
EcoRI GAATTC 1 cut(s) 1260
EcoRII CCWGG 6 cut(s) 391, 537, 636, 1018, 1039, 1182
EcoT14I CCWWGG 2 cut(s) 552, 665
EcoT22I ATGCAT 2 cut(s) 94, 1411
EcoT38I GRGCYC 1 cut(s) 644
ErhI CCWWGG 2 cut(s) 552, 665
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FauNDI CATATG 1 cut(s) 971
Fnu4HI GCNGC 7 cut(s) 42, 531, 534, 543, 726, 1058, 1345
FokI GGATG 4 cut(s) 101, 879, 1418, 1488
FriOI GRGCYC 1 cut(s) 644
Fsp4HI GCNGC 7 cut(s) 42, 531, 534, 543, 726, 1058, 1345
FspBI CTAG 6 cut(s) 212, 606, 921, 939, 1158, 1199
GluI GCNGC 7 cut(s) 42, 531, 534, 543, 726, 1058, 1345
GsuI CTGGAG 3 cut(s) 1002, 1062, 1137
HaeIII GGCC 3 cut(s) 123, 451, 1182
HapII CCGG 3 cut(s) 234, 503, 1270
HgaI GACGC 1 cut(s) 1468
Hin1I GRCGYC 1 cut(s) 1479
HincII GTYRAC 1 cut(s) 1298
HindII GTYRAC 1 cut(s) 1298
HindIII AAGCTT 1 cut(s) 850
HinfI GANTC 3 cut(s) 173, 989, 1418
HpaII CCGG 3 cut(s) 234, 503, 1270
HphI GGTGA 4 cut(s) 76, 248, 428, 1259
Hpy166II GTNNAC 6 cut(s) 338, 419, 787, 1129, 1298, 1336
Hpy188I TCNGA 8 cut(s) 153, 198, 511, 961, 1107, 1235, 1388, 1444
Hpy188III TCNNGA 6 cut(s) 132, 185, 307, 808, 1394, 1422
Hpy8I GTNNAC 6 cut(s) 338, 419, 787, 1129, 1298, 1336
Hpy99I CGWCG 1 cut(s) 1291
HpyAV CCTTC 4 cut(s) 61, 113, 304, 1319
HpyCH4III ACNGT 3 cut(s) 498, 1133, 1287
HpyF10VI GCNNNNNNNGC 8 cut(s) 344, 393, 527, 539, 542, 1107, 1154, 1444
HpyF3I CTNAG 4 cut(s) 150, 453, 747, 1106
Hsp92I GRCGYC 1 cut(s) 1479
Kzo9I GATC 4 cut(s) 208, 571, 750, 1274
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 2 cut(s) 647, 722
Lsp1109I GCAGC 5 cut(s) 542, 554, 737, 1069, 1356
LweI GCATC 7 cut(s) 79, 220, 334, 643, 897, 933, 1396
MaeI CTAG 6 cut(s) 212, 606, 921, 939, 1158, 1199
MaeIII GTNAC 7 cut(s) 221, 236, 628, 981, 1133, 1205, 1281
MalI GATC 4 cut(s) 210, 573, 752, 1276
MboI GATC 4 cut(s) 208, 571, 750, 1274
MboII GAAGA 3 cut(s) 112, 540, 828
MfeI CAATTG 1 cut(s) 436
MflI RGATCY 1 cut(s) 750
MhlI GDGCHC 2 cut(s) 340, 644
MluCI AATT 5 cut(s) 436, 955, 1170, 1260, 1311
MlyI GAGTC 1 cut(s) 983
MmeI TCCRAC 3 cut(s) 984, 1213, 1366
Mph1103I ATGCAT 2 cut(s) 94, 1411
MseI TTAA 2 cut(s) 561, 1035
MspI CCGG 3 cut(s) 234, 503, 1270
MspR9I CCNGG 8 cut(s) 393, 504, 539, 638, 1020, 1041, 1184, 1271
MssI GTTTAAAC 1 cut(s) 1036
MunI CAATTG 1 cut(s) 436
Mva1269I GAATGC 3 cut(s) 266, 387, 1438
MvaI CCWGG 6 cut(s) 393, 539, 638, 1020, 1041, 1184
MwoI GCNNNNNNNGC 8 cut(s) 344, 393, 527, 539, 542, 1107, 1154, 1444
NciI CCSGG 2 cut(s) 504, 1271
NcoI CCATGG 1 cut(s) 552
NdeI CATATG 1 cut(s) 971
NdeII GATC 4 cut(s) 208, 571, 750, 1274
NlaIV GGNNCC 2 cut(s) 508, 643
NmeAIII GCCGAG 1 cut(s) 497
NmuCI GTSAC 1 cut(s) 236
NsiI ATGCAT 2 cut(s) 94, 1411
NspI RCATGY 2 cut(s) 569, 1222
PaeR7I CTCGAG 1 cut(s) 1422
PagI TCATGA 2 cut(s) 184, 807
PceI AGGCCT 1 cut(s) 451
PciI ACATGT 1 cut(s) 1218
PciSI GCTCTTC 1 cut(s) 95
PctI GAATGC 3 cut(s) 266, 387, 1438
PfeI GAWTC 2 cut(s) 173, 1418
PflMI CCANNNNNTGG 1 cut(s) 354
PkrI GCNGC 7 cut(s) 43, 532, 535, 544, 727, 1059, 1346
PleI GAGTC 1 cut(s) 983
PmeI GTTTAAAC 1 cut(s) 1036
PpsI GAGTC 1 cut(s) 983
PscI ACATGT 1 cut(s) 1218
Psp6I CCWGG 6 cut(s) 391, 537, 636, 1018, 1039, 1182
PspGI CCWGG 6 cut(s) 391, 537, 636, 1018, 1039, 1182
PspN4I GGNNCC 2 cut(s) 508, 643
PspPI GGNCC 2 cut(s) 662, 1391
PstI CTGCAG 2 cut(s) 579, 1059
PsuI RGATCY 1 cut(s) 750
RsaI GTAC 3 cut(s) 581, 786, 897
RsaNI GTAC 3 cut(s) 580, 785, 896
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 561, 1035
SatI GCNGC 7 cut(s) 42, 531, 534, 543, 726, 1058, 1345
Sau3AI GATC 4 cut(s) 208, 571, 750, 1274
Sau96I GGNCC 2 cut(s) 662, 1391
ScaI AGTACT 1 cut(s) 581
SchI GAGTC 1 cut(s) 983
ScrFI CCNGG 8 cut(s) 393, 504, 539, 638, 1020, 1041, 1184, 1271
SduI GDGCHC 2 cut(s) 340, 644
SfaNI GCATC 7 cut(s) 79, 220, 334, 643, 897, 933, 1396
SfcI CTRYAG 3 cut(s) 575, 840, 1055
Sfr274I CTCGAG 1 cut(s) 1422
SinI GGWCC 2 cut(s) 662, 1391
SlaI CTCGAG 1 cut(s) 1422
SmlI CTYRAG 1 cut(s) 1422
SmoI CTYRAG 1 cut(s) 1422
Sse9I AATT 5 cut(s) 436, 955, 1170, 1260, 1311
SseBI AGGCCT 1 cut(s) 451
SsiI CCGC 2 cut(s) 41, 534
SspMI CTAG 6 cut(s) 212, 606, 921, 939, 1158, 1199
StuI AGGCCT 1 cut(s) 451
StyD4I CCNGG 8 cut(s) 391, 502, 537, 636, 1018, 1039, 1182, 1269
StyI CCWWGG 2 cut(s) 552, 665
TaaI ACNGT 3 cut(s) 498, 1133, 1287
TaqI TCGA 4 cut(s) 352, 764, 927, 1423
TasI AATT 5 cut(s) 436, 955, 1170, 1260, 1311
TatI WGTACW 3 cut(s) 579, 784, 895
TauI GCSGC 2 cut(s) 44, 536
TfiI GAWTC 2 cut(s) 173, 1418
Tru1I TTAA 2 cut(s) 561, 1035
Tru9I TTAA 2 cut(s) 561, 1035
TscAI CASTG 2 cut(s) 492, 1136
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 5 cut(s) 530, 542, 725, 1057, 1344
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 4 cut(s) 173, 904, 958, 1253
TspGWI ACGGA 2 cut(s) 204, 872
TspRI CASTG 2 cut(s) 492, 1136
Van91I CCANNNNNTGG 1 cut(s) 354
VneI GTGCAC 1 cut(s) 336
VpaK11BI GGWCC 2 cut(s) 662, 1391
XapI RAATTY 1 cut(s) 1260
XceI RCATGY 2 cut(s) 569, 1222
XhoI CTCGAG 1 cut(s) 1422
XspI CTAG 6 cut(s) 212, 606, 921, 939, 1158, 1199
ZrmI AGTACT 1 cut(s) 581
Zsp2I ATGCAT 2 cut(s) 94, 1411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.