FvH4_7g27773

Endoglucanase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
20711659 .. 20713958
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27773.t1

Sequence Viewer

Length: 1527 bp
ATGAGTAAAATCATGAGCGGGAGTACCCTTCCAAGGCTGTTAATAATATTAACAGGGATGCTCACATCAGCAAGTTTGGCTTCGTCACACAACTACACTGATGCTTTGTCCAAGTGCATATTGTTTTTCGAAGGGCAGAGATCCGGGGACTTGCCGCCTTCCCAAAGAATGACTTGGAGGAAGAATTCAGCCTTGAAGGATGGCTCTGATGTTGGTATGGATCTTGTAGGGGGTTACTATGATGCAGGTGACAATGTCAAGTTCAACTTCCCCATGGCCTTCACAACAACAATGTTGTCTTGGAGCGTGCTAGAGTTCGGAAATCTAATGGGATCAGACCTTCAACATGCTTTGGAAGCTATAAGATGGGGGACTGATTATTTGCTGAAAGCCACAAACGTTCCTGATTCTGTTGTTGGTGTAGTTGGCGATCCCAATGGTGATCACAGTTGTTCTGAAAGGCCAGAGGACATGGACACCCCTAGAACCTCTTATGTAGTCACCAAAGAAAGGCCAGGTTCGGAAGTCTCGGCCGAAATTGCAGCTGCACTTGCAGCTTCTTCCATGGTGTTCAAATATTCAGACATTAACTACTCAACTTTGCTTCTTAACCGATCAATGCAGGTCTTTGAATTTGCAGATAAATATAGAGGGTCTTACAATGTCAGTATTGGGGCAGGAGCATGCCCCTTTTACTGTGATTTCGGAGGCTACATGGATGAATTGCTCTGGGGAGCTGCTTGGCTATACAAGGCAACTGGAGCAGCTGATTATTGGAAATATGTGAGAGAAAACATAGACAAAATGGACTCCACTGTTATAAGAAATTTCAATGGGGTTCCTGTTTCATACATGAATGATGCTGTCACTGAATTTGGATGGGATTCAAAGCATTCTGGGATTAATGTACTTGTTTCTAAGTGGGTAATGACTGATCCGGGAAGTTCTTCTCCTTTTATTCCCAATGCTGATAAGTTTGTATGTTCAATTTTGCCGGAATCACCCACCGGAAAATCGGTCACATATTCACCAGGAGGACTGCTGTTCAAACCAGGAGGAAGTAACCTGCAACATTCAACCGCCCTATCATTTCTTCTTATGGTTTATGCCGGATACATGAAGGCTGCAAACAAAGTCGTGAACTGCGGCAATGATGTTGTCATCACTCCGGATCGGCTAGTTAATTTCACCAAAGGACAGGTTGATTATATACTAGGAAGCAACCCATTAGGCATGTCATACATGGTCGGATACGGGCCAAAGTTTCCTGAGAAAATACATCACCGGGGTTCTGTTCTACCGTGCCTTGATCAACATCCACAACGCATCGGTTGCCGCGGAGGAGATGTGTATTGGCAAAGCCAAGGTCCTAATCTGAACTTGCTAACTGGTGCAATTGTGGGAGGTCCTGCTGAAGATGATACATTCCAAGATTCTCGAAATAATGTTCCACAATCAGAGCCAACTACATACATCAATGCTCCTTTTGTGGGTGTTTTGGCTTACTTTAAATCTCTATTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

509

Amino Acids

55.46

Weight (kDa)

5.44

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 32 - 500 8.1e-145 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000663)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 821
AarI CACCTGC 1 cut(s) 236
Acc36I ACCTGC 3 cut(s) 236, 613, 1074
AccBSI CCGCTC 1 cut(s) 18
AccII CGCG 1 cut(s) 1338
AccIII TCCGGA 1 cut(s) 1168
AciI CCGC 6 cut(s) 18, 155, 1080, 1146, 1336, 1338
AclI AACGTT 1 cut(s) 399
AclWI GGATC 6 cut(s) 135, 228, 340, 425, 929, 1179
AcoI YGGCCR 1 cut(s) 531
AcsI RAATTY 4 cut(s) 184, 632, 826, 872
AcuI CTGAAG 1 cut(s) 1434
AfaI GTAC 2 cut(s) 25, 909
AfiI CCNNNNNNNGG 3 cut(s) 33, 510, 1490
AjnI CCWGG 3 cut(s) 514, 1030, 1051
AluBI AGCT 5 cut(s) 359, 545, 557, 737, 767
AluI AGCT 5 cut(s) 359, 545, 557, 737, 767
Alw26I GTCTC 1 cut(s) 532
AlwI GGATC 6 cut(s) 135, 228, 340, 425, 929, 1179
Aor13HI TCCGGA 1 cut(s) 1168
AoxI GGCC 5 cut(s) 276, 461, 512, 531, 1256
ApeKI GCWGC 6 cut(s) 542, 545, 554, 737, 764, 1124
ApoI RAATTY 4 cut(s) 184, 632, 826, 872
ArsI GACNNNNNNTTYG 4 cut(s) 364, 396, 1351, 1383
AseI ATTAAT 1 cut(s) 903
Asp700I GAANNNNTTC 1 cut(s) 946
AspS9I GGNCC 3 cut(s) 1256, 1367, 1406
AsuC2I CCSGG 3 cut(s) 145, 939, 1286
AsuHPI GGTGA 7 cut(s) 260, 452, 493, 993, 1020, 1180, 1274
AsuII TTCGAA 1 cut(s) 129
AvaII GGWCC 2 cut(s) 1367, 1406
BbvI GCAGC 6 cut(s) 532, 554, 566, 724, 776, 1111
BccI CCATC 3 cut(s) 194, 360, 873
BciT130I CCWGG 3 cut(s) 516, 1032, 1053
BciVI GTATCC 2 cut(s) 1106, 1244
BclI TGATCA 2 cut(s) 442, 1309
BcnI CCSGG 3 cut(s) 145, 939, 1286
BcoDI GTCTC 1 cut(s) 532
BfaI CTAG 4 cut(s) 311, 483, 1178, 1214
BfuAI ACCTGC 3 cut(s) 236, 613, 1074
BfuI GTATCC 2 cut(s) 1106, 1244
BisI GCNGC 9 cut(s) 155, 543, 546, 555, 738, 765, 1125, 1147, 1336
BlsI GCNGC 9 cut(s) 156, 544, 547, 556, 739, 766, 1126, 1148, 1337
Bme1390I CCNGG 6 cut(s) 145, 516, 939, 1032, 1053, 1286
Bme18I GGWCC 2 cut(s) 1367, 1406
BmgT120I GGNCC 3 cut(s) 1256, 1367, 1406
BmiI GGNNCC 1 cut(s) 840
BmrFI CCNGG 6 cut(s) 145, 516, 939, 1032, 1053, 1286
BmsI GCATC 5 cut(s) 48, 91, 232, 850, 1335
BpmI CTGGAG 1 cut(s) 780
Bpu14I TTCGAA 1 cut(s) 129
BpuMI CCSGG 3 cut(s) 145, 939, 1286
BsaBI GATNNNNATC 1 cut(s) 1314
BsaJI CCNNGG 7 cut(s) 32, 144, 273, 564, 1285, 1336, 1363
BsaWI WCCGGW 2 cut(s) 1007, 1168
BsaXI ACNNNNNCTCC 2 cut(s) 1332, 1362
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 510, 1490
Bse1I ACTGG 2 cut(s) 763, 1393
Bse3DI GCAATG 1 cut(s) 1156
Bse8I GATNNNNATC 1 cut(s) 1314
BseAI TCCGGA 1 cut(s) 1168
BseBI CCWGG 3 cut(s) 516, 1032, 1053
BseDI CCNNGG 7 cut(s) 32, 144, 273, 564, 1285, 1336, 1363
BseGI GGATG 5 cut(s) 63, 205, 724, 884, 1315
BseJI GATNNNNATC 1 cut(s) 1314
BseLI CCNNNNNNNGG 3 cut(s) 33, 510, 1490
BseMI GCAATG 1 cut(s) 1156
BseMII CTCAG 1 cut(s) 1260
BseNI ACTGG 2 cut(s) 763, 1393
BseRI GAGGAG 1 cut(s) 1356
BseX3I CGGCCG 1 cut(s) 531
BseXI GCAGC 6 cut(s) 532, 554, 566, 724, 776, 1111
BsgI GTGCAG 1 cut(s) 531
Bsh1236I CGCG 1 cut(s) 1338
Bsh1285I CGRYCG 1 cut(s) 534
BshFI GGCC 5 cut(s) 278, 463, 514, 533, 1258
BsiEI CGRYCG 1 cut(s) 534
BsiSI CCGG 7 cut(s) 144, 938, 995, 1008, 1110, 1169, 1285
BslFI GGGAC 2 cut(s) 161, 385
BslI CCNNNNNNNGG 3 cut(s) 33, 510, 1490
BsmAI GTCTC 1 cut(s) 532
BsmFI GGGAC 2 cut(s) 161, 385
BsmI GAATGC 1 cut(s) 892
BsnI GGCC 5 cut(s) 278, 463, 514, 533, 1258
Bsp119I TTCGAA 1 cut(s) 129
Bsp13I TCCGGA 1 cut(s) 1168
Bsp143I GATC 9 cut(s) 140, 220, 332, 430, 442, 614, 934, 1171, 1309
Bsp19I CCATGG 2 cut(s) 273, 564
BspACI CCGC 6 cut(s) 18, 155, 1080, 1146, 1336, 1338
BspANI GGCC 5 cut(s) 278, 463, 514, 533, 1258
BspCNI CTCAG 1 cut(s) 1261
BspEI TCCGGA 1 cut(s) 1168
BspFNI CGCG 1 cut(s) 1338
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 840
BspMI ACCTGC 3 cut(s) 236, 613, 1074
BspPI GGATC 6 cut(s) 135, 228, 340, 425, 929, 1179
BspT104I TTCGAA 1 cut(s) 129
BsrBI CCGCTC 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 1156
BsrI ACTGG 2 cut(s) 763, 1393
BssECI CCNNGG 7 cut(s) 32, 144, 273, 564, 1285, 1336, 1363
BssMI GATC 9 cut(s) 140, 220, 332, 430, 442, 614, 934, 1171, 1309
BssT1I CCWWGG 4 cut(s) 32, 273, 564, 1363
Bst2UI CCWGG 3 cut(s) 516, 1032, 1053
Bst4CI ACNGT 4 cut(s) 449, 698, 817, 1302
BstAPI GCANNNNNTGC 1 cut(s) 1332
BstBI TTCGAA 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 308, 685
BstDEI CTNAG 2 cut(s) 918, 1269
BstDSI CCRYGG 3 cut(s) 273, 564, 1336
BstF5I GGATG 5 cut(s) 63, 205, 724, 884, 1315
BstFNI CGCG 1 cut(s) 1338
BstKTI GATC 9 cut(s) 143, 223, 335, 433, 445, 617, 937, 1174, 1312
BstMAI GTCTC 1 cut(s) 532
BstMBI GATC 9 cut(s) 140, 220, 332, 430, 442, 614, 934, 1171, 1309
BstMCI CGRYCG 1 cut(s) 534
BstMWI GCNNNNNNNGC 7 cut(s) 77, 356, 539, 551, 554, 761, 1332
BstNI CCWGG 3 cut(s) 516, 1032, 1053
BstNSI RCATGY 3 cut(s) 350, 687, 1237
BstSCI CCNGG 6 cut(s) 143, 514, 937, 1030, 1051, 1284
BstUI CGCG 1 cut(s) 1338
BstV1I GCAGC 6 cut(s) 532, 554, 566, 724, 776, 1111
BstX2I RGATCY 2 cut(s) 140, 220
BstYI RGATCY 2 cut(s) 140, 220
BstZI CGGCCG 1 cut(s) 531
BsuI GTATCC 2 cut(s) 1106, 1244
BsuRI GGCC 5 cut(s) 278, 463, 514, 533, 1258
BtgI CCRYGG 3 cut(s) 273, 564, 1336
BtsCI GGATG 5 cut(s) 63, 205, 724, 884, 1315
BtsIMutI CAGTG 3 cut(s) 96, 813, 867
BveI ACCTGC 3 cut(s) 236, 613, 1074
Cac8I GCNNGC 2 cut(s) 308, 685
CciI TCATGA 1 cut(s) 12
Cfr13I GGNCC 3 cut(s) 1256, 1367, 1406
Cfr42I CCGCGG 1 cut(s) 1339
Csp6I GTAC 2 cut(s) 24, 908
CviQI GTAC 2 cut(s) 24, 908
DdeI CTNAG 2 cut(s) 918, 1269
DpnI GATC 9 cut(s) 142, 222, 334, 432, 444, 616, 936, 1173, 1311
DpnII GATC 9 cut(s) 140, 220, 332, 430, 442, 614, 934, 1171, 1309
DraI TTTAAA 1 cut(s) 1510
EaeI YGGCCR 1 cut(s) 531
EagI CGGCCG 1 cut(s) 531
EclXI CGGCCG 1 cut(s) 531
Eco130I CCWWGG 4 cut(s) 32, 273, 564, 1363
Eco47I GGWCC 2 cut(s) 1367, 1406
Eco52I CGGCCG 1 cut(s) 531
Eco57I CTGAAG 1 cut(s) 1434
EcoO109I RGGNCCY 2 cut(s) 1367, 1406
EcoRI GAATTC 1 cut(s) 184
EcoRII CCWGG 3 cut(s) 514, 1030, 1051
EcoT14I CCWWGG 4 cut(s) 32, 273, 564, 1363
ErhI CCWWGG 4 cut(s) 32, 273, 564, 1363
FalI AAGNNNNNCTT 6 cut(s) 64, 96, 157, 189, 251, 283
FaqI GGGAC 2 cut(s) 161, 385
FauI CCCGC 1 cut(s) 11
FbaI TGATCA 2 cut(s) 442, 1309
Fnu4HI GCNGC 9 cut(s) 155, 543, 546, 555, 738, 765, 1125, 1147, 1336
FokI GGATG 5 cut(s) 70, 212, 731, 891, 1302
Fsp4HI GCNGC 9 cut(s) 155, 543, 546, 555, 738, 765, 1125, 1147, 1336
FspBI CTAG 4 cut(s) 311, 483, 1178, 1214
GluI GCNGC 9 cut(s) 155, 543, 546, 555, 738, 765, 1125, 1147, 1336
GsuI CTGGAG 1 cut(s) 780
HaeIII GGCC 5 cut(s) 278, 463, 514, 533, 1258
HapII CCGG 7 cut(s) 144, 938, 995, 1008, 1110, 1169, 1285
HinfI GANTC 5 cut(s) 407, 809, 884, 998, 1433
HpaII CCGG 7 cut(s) 144, 938, 995, 1008, 1110, 1169, 1285
HphI GGTGA 7 cut(s) 260, 452, 493, 993, 1020, 1180, 1274
Hpy166II GTNNAC 1 cut(s) 1141
Hpy188III TCNNGA 6 cut(s) 13, 404, 1138, 1169, 1268, 1437
Hpy8I GTNNAC 1 cut(s) 1141
HpyAV CCTTC 7 cut(s) 38, 125, 168, 190, 289, 350, 1114
HpyCH4III ACNGT 4 cut(s) 449, 698, 817, 1302
HpyCH4IV ACGT 1 cut(s) 399
HpyF10VI GCNNNNNNNGC 7 cut(s) 77, 356, 539, 551, 554, 761, 1332
HpyF3I CTNAG 2 cut(s) 918, 1269
HpySE526I ACGT 1 cut(s) 399
Kpn2I TCCGGA 1 cut(s) 1168
Ksp22I TGATCA 2 cut(s) 442, 1309
KspI CCGCGG 1 cut(s) 1339
Kzo9I GATC 9 cut(s) 140, 220, 332, 430, 442, 614, 934, 1171, 1309
LmnI GCTCC 5 cut(s) 303, 680, 734, 761, 1486
Lsp1109I GCAGC 6 cut(s) 532, 554, 566, 724, 776, 1111
LweI GCATC 5 cut(s) 48, 91, 232, 850, 1335
MaeI CTAG 4 cut(s) 311, 483, 1178, 1214
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 7 cut(s) 84, 233, 248, 499, 865, 1018, 1061
MalI GATC 9 cut(s) 142, 222, 334, 432, 444, 616, 936, 1173, 1311
MbiI CCGCTC 1 cut(s) 18
MboI GATC 9 cut(s) 140, 220, 332, 430, 442, 614, 934, 1171, 1309
MboII GAAGA 5 cut(s) 193, 552, 939, 1085, 1427
MfeI CAATTG 1 cut(s) 1395
MflI RGATCY 2 cut(s) 140, 220
MluCI AATT 9 cut(s) 184, 537, 632, 722, 826, 872, 987, 1183, 1395
MlyI GAGTC 1 cut(s) 803
MmeI TCCRAC 1 cut(s) 1228
MnlI CCTC 9 cut(s) 171, 460, 499, 644, 701, 1028, 1049, 1334, 1397
MroI TCCGGA 1 cut(s) 1168
MroXI GAANNNNTTC 1 cut(s) 946
MseI TTAA 7 cut(s) 41, 50, 588, 609, 903, 1182, 1509
MspA1I CMGCKG 3 cut(s) 545, 767, 1338
MspI CCGG 7 cut(s) 144, 938, 995, 1008, 1110, 1169, 1285
MspR9I CCNGG 6 cut(s) 145, 516, 939, 1032, 1053, 1286
MunI CAATTG 1 cut(s) 1395
Mva1269I GAATGC 1 cut(s) 892
MvaI CCWGG 3 cut(s) 516, 1032, 1053
MvnI CGCG 1 cut(s) 1338
MwoI GCNNNNNNNGC 7 cut(s) 77, 356, 539, 551, 554, 761, 1332
NciI CCSGG 3 cut(s) 145, 939, 1286
NcoI CCATGG 2 cut(s) 273, 564
NdeII GATC 9 cut(s) 140, 220, 332, 430, 442, 614, 934, 1171, 1309
NlaIV GGNNCC 1 cut(s) 840
NmeAIII GCCGAG 1 cut(s) 509
NmuCI GTSAC 5 cut(s) 84, 248, 499, 865, 1018
NspI RCATGY 3 cut(s) 350, 687, 1237
NspV TTCGAA 1 cut(s) 129
PaeI GCATGC 1 cut(s) 687
PagI TCATGA 1 cut(s) 12
PaqCI CACCTGC 1 cut(s) 236
PctI GAATGC 1 cut(s) 892
PdmI GAANNNNTTC 1 cut(s) 946
PfeI GAWTC 4 cut(s) 407, 884, 998, 1433
PflFI GACNNNGTC 1 cut(s) 254
PfoI TCCNGGA 1 cut(s) 937
PkrI GCNGC 9 cut(s) 156, 544, 547, 556, 739, 766, 1126, 1148, 1337
PleI GAGTC 1 cut(s) 803
PpsI GAGTC 1 cut(s) 803
PpuMI RGGWCCY 2 cut(s) 1367, 1406
PshBI ATTAAT 1 cut(s) 903
PsiI TTATAA 1 cut(s) 821
Psp1406I AACGTT 1 cut(s) 399
Psp5II RGGWCCY 2 cut(s) 1367, 1406
Psp6I CCWGG 3 cut(s) 514, 1030, 1051
PspGI CCWGG 3 cut(s) 514, 1030, 1051
PspN4I GGNNCC 1 cut(s) 840
PspPI GGNCC 3 cut(s) 1256, 1367, 1406
PspPPI RGGWCCY 2 cut(s) 1367, 1406
PsuI RGATCY 2 cut(s) 140, 220
PsyI GACNNNGTC 1 cut(s) 254
PvuII CAGCTG 2 cut(s) 545, 767
RsaI GTAC 2 cut(s) 25, 909
RsaNI GTAC 2 cut(s) 24, 908
SacII CCGCGG 1 cut(s) 1339
SaqAI TTAA 7 cut(s) 41, 50, 588, 609, 903, 1182, 1509
SatI GCNGC 9 cut(s) 155, 543, 546, 555, 738, 765, 1125, 1147, 1336
Sau3AI GATC 9 cut(s) 140, 220, 332, 430, 442, 614, 934, 1171, 1309
Sau96I GGNCC 3 cut(s) 1256, 1367, 1406
SchI GAGTC 1 cut(s) 803
ScrFI CCNGG 6 cut(s) 145, 516, 939, 1032, 1053, 1286
SfaNI GCATC 5 cut(s) 48, 91, 232, 850, 1335
Sfr303I CCGCGG 1 cut(s) 1339
SfuI TTCGAA 1 cut(s) 129
SgrBI CCGCGG 1 cut(s) 1339
SinI GGWCC 2 cut(s) 1367, 1406
SphI GCATGC 1 cut(s) 687
Sse9I AATT 9 cut(s) 184, 537, 632, 722, 826, 872, 987, 1183, 1395
SsiI CCGC 6 cut(s) 18, 155, 1080, 1146, 1336, 1338
SspI AATATT 2 cut(s) 48, 578
SspMI CTAG 4 cut(s) 311, 483, 1178, 1214
StyD4I CCNGG 6 cut(s) 143, 514, 937, 1030, 1051, 1284
StyI CCWWGG 4 cut(s) 32, 273, 564, 1363
TaaI ACNGT 4 cut(s) 449, 698, 817, 1302
TaiI ACGT 1 cut(s) 402
TaqI TCGA 2 cut(s) 129, 1438
TaqII GACCGA 1 cut(s) 1006
TasI AATT 9 cut(s) 184, 537, 632, 722, 826, 872, 987, 1183, 1395
TatI WGTACW 1 cut(s) 907
TauI GCSGC 3 cut(s) 157, 1149, 1338
TfiI GAWTC 4 cut(s) 407, 884, 998, 1433
Tru1I TTAA 7 cut(s) 41, 50, 588, 609, 903, 1182, 1509
Tru9I TTAA 7 cut(s) 41, 50, 588, 609, 903, 1182, 1509
TscAI CASTG 3 cut(s) 103, 820, 874
TseFI GTSAC 5 cut(s) 84, 248, 499, 865, 1018
TseI GCWGC 6 cut(s) 542, 545, 554, 737, 764, 1124
Tsp45I GTSAC 5 cut(s) 84, 248, 499, 865, 1018
TspDTI ATGAA 4 cut(s) 735, 837, 869, 1133
TspRI CASTG 3 cut(s) 103, 820, 874
Tth111I GACNNNGTC 1 cut(s) 254
VpaK11BI GGWCC 2 cut(s) 1367, 1406
VspI ATTAAT 1 cut(s) 903
XapI RAATTY 4 cut(s) 184, 632, 826, 872
XceI RCATGY 3 cut(s) 350, 687, 1237
XmnI GAANNNNTTC 1 cut(s) 946
XspI CTAG 4 cut(s) 311, 483, 1178, 1214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.