Rh2BG536600

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000663
Physical Location & Seq
Reverse (-)
74526292 .. 74526561
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG536600.1

Sequence Viewer

Length: 270 bp
ATGGATCTGGTAGGGGGTTACTATGATGCTGGAGACAACGTGAAGTTCAACTTTCCCATGGCATTCACAACAACAATGTTGTCTTGGAGTGTTCTAGAGTTTGGTGAATCAATGGGCTCAGAACTTCCATATGCTTCGGAAGTTATAAGATGGGGCACTGATTACTTGCTTAAATCCACAGATGCTTCTGGTTCTGTTGCCGGCTTTGTTGGCGACCCCGTAGGCGACCACACTTGTTGGGAAAGACCCGAAGATATGGACACTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

89

Amino Acids

9.77

Weight (kDa)

4.05

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 1 - 88 3.9e-34 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23210 AT1G70710
fragaria_vesca FvH4_4g33940 FvH4_6g41450 FvH4_7g27772 FvH4_7g27773 FvH4_7g27774 FvH4_7g27775
malus_domestica MD00G1036700.v1.1 MD07G1097500.v1.1 MD11G1195000.v1.1 MD16G1021500.v1.1
prunus_persica Prupe.1G331000_v2.0.a1 Prupe.1G331000_v2.0.a1 Prupe.2G121700_v2.0.a1 Prupe.2G278700_v2.0.a1 Prupe.2G278800_v2.0.a1
pyrus_communis pycom01g19480 pycom03g11560 pycom06g08760 pycom16g01920
rosa_chinensis RchiOBHm_Chr1g0374571 RchiOBHm_Chr1g0374581 RchiOBHm_Chr1g0374591 RchiOBHm_Chr1g0374601 RchiOBHm_Chr1g0374611 RchiOBHm_Chr2g0157011 RchiOBHm_Chr4g0443471
rosa_laevigata RLG00000005926 RLG00000026724 RLG00000026725 RLG00000026726 RLG00000026727
rosa_multiflora Rmu_co8114132.1_g000001 Rmu_sc0004947.1_g000005 Rmu_sc0004947.1_g000006 Rmu_sc0004947.1_g000007 Rmu_sc0004947.1_g000008 Rmu_sc0009670.1_g000003 Rmu_sc0034696.1_g000001 Rmu_sc0037664.1_g000001 Rmu_ssc0000408.1_g000014
rosa_roxburghii Rroxscaffold_4G00283360 Rroxscaffold_4G00283370 Rroxscaffold_4G00283380 Rroxscaffold_5G00384020
rosa_rugosa Rorug01G0059600 Rorug01G0384100 Rorug01G0384200 Rorug01G0384200 Rorug02G0457500 Rorug04G0346500 Rorug04G0346500 Rorug07G0215300
rosa_samantha Rh1AG395000 Rh1AG395100 Rh1AG395200 Rh1AG395400 Rh1CG372800 Rh1CG372900 Rh1CG373000 Rh1CG373100 Rh1DG390300 Rh1DG390400 Rh1DG390500 Rh1DG390600 Rh2BG536600 Rh2DG545500 Rh4AG402000 Rh4CG429100 Rh4DG409100
rosa_wichuraiana Rw1G035030 Rw1G035040 Rw1G035050 Rw1G035060 Rw4G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
AclWI GGATC 1 cut(s) 12
AgsI TTSAA 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 119
BccI CCATC 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 95
BmsI GCATC 2 cut(s) 16, 172
BpmI CTGGAG 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bse118I RCCGGY 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 27
BsmI GAATGC 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 119, 158
Bsp143I GATC 1 cut(s) 4
Bsp19I CCATGG 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 131
BspPI GGATC 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 1 cut(s) 4
BssT1I CCWWGG 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 118
BstDSI CCRYGG 1 cut(s) 57
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtgI CCRYGG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 200
CspCI CAANNNNNGTGG 2 cut(s) 218, 253
CviAII CATG 1 cut(s) 58
CviJI RGCY 2 cut(s) 117, 204
CviKI_1 RGCY 2 cut(s) 117, 204
DdeI CTNAG 1 cut(s) 118
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 1 cut(s) 61
FaiI YATR 6 cut(s) 24, 59, 130, 132, 146, 257
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FatI CATG 1 cut(s) 57
FauNDI CATATG 1 cut(s) 130
FriOI GRGCYC 1 cut(s) 119
FspBI CTAG 1 cut(s) 95
GsuI CTGGAG 1 cut(s) 51
HapII CCGG 1 cut(s) 201
Hin1II CATG 1 cut(s) 61
HinfI GANTC 1 cut(s) 107
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 116
Hpy188I TCNGA 2 cut(s) 121, 139
Hpy188III TCNNGA 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 118
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 1 cut(s) 61
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 1 cut(s) 4
LpnPI CCDG 3 cut(s) 15, 174, 214
LweI GCATC 2 cut(s) 16, 172
MaeI CTAG 1 cut(s) 95
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 1 cut(s) 263
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 119, 158
MroNI GCCGGC 1 cut(s) 200
MseI TTAA 1 cut(s) 171
MspI CCGG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 210
NaeI GCCGGC 1 cut(s) 202
NcoI CCATGG 1 cut(s) 57
NdeI CATATG 1 cut(s) 130
NdeII GATC 1 cut(s) 4
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 1 cut(s) 61
PctI GAATGC 1 cut(s) 62
PdiI GCCGGC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 107
PsiI TTATAA 1 cut(s) 146
PsuI RGATCY 1 cut(s) 4
SaqAI TTAA 1 cut(s) 171
Sau3AI GATC 1 cut(s) 4
SduI GDGCHC 2 cut(s) 119, 158
SetI ASST 1 cut(s) 42
SfaNI GCATC 2 cut(s) 16, 172
SspMI CTAG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 57
TaiI ACGT 1 cut(s) 42
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 1 cut(s) 163
TspRI CASTG 1 cut(s) 163
XbaI TCTAGA 1 cut(s) 94
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.