Rh1AG395400

Endoglucanase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
62345550 .. 62347068
1519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG395400.1

Sequence Viewer

Length: 843 bp
ATGTTGGCAATGGCAACACTAGTAAGCTCTGCGGTTCAACATAACTACGCGGATGCTTTGTCAAAAAGTATTTTGTTTTTTGAAGGGCAGAGATCGGGTAGGTTGCCGCATACACAACGAATGATATGGAGGAAAGATTCGGCTCTACGTGATGGCCTAGATGTTAAAAATTCGGAAAATCAATGGGCTCAGAACTTCCACATGCCTTGGAACTTGGAAGCCATTAGATGGGCGACTGACTGTTTGCTTAAATCCACTAGTGCTAGTGGTTCTGTTGTTGGTGTAGTCGGTGATCCCAATGGTGACCACACTTGTTGGGAAAGGCCTGAAGACATGGACACTCCTCGAACATCTTACATAGTAACCACACAAAAGCCAGGTTCCAAAGTTTCAACAGAGACTGCAGCCGCATTTGCAGCTTCTTCCATAGTGTTTAGTGGTTCTGACAAAGGATATTCTACCTTGCTTCTTACCCGAGCAAGACAGGTGTTTGAATTTGCTGATAAATATAGGCGTTCTTACAATGACAGTATTGGGAGTGGAGCATGCCCATTTTACTGTGACTTTAATGGCTACAAGGATGAATTGATTTGGGGAGCAGCATGGTTATACAAGGCAACAAGGAGTCCTATTTATTGGAACTATGTAAAACAGAACATAGATGCCATGAATTTGGAGTCCAATGTAGTCCTAAGAAATGTGGAAGGCCAAGCAGTTGTATACAATGGCGGAGATGTTACCGAATTTGGATGGGATGCAAAGCCTGCTGGCATTAACATCCTTGTTTCTCAACTAAATACTTGTTTCTCTTTCATAATGGTCATGAATGTGATCCTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

280

Amino Acids

31.18

Weight (kDa)

6.1

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 16 - 56 2e-09 Glycosyl hydrolase family 9
Glyco_hydro_9 PF00759 70 - 266 6.2e-55 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000663)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 228
AccI GTMKAC 1 cut(s) 720
AccII CGCG 1 cut(s) 50
AciI CCGC 5 cut(s) 32, 50, 107, 408, 729
AclWI GGATC 2 cut(s) 287, 826
AcsI RAATTY 4 cut(s) 169, 494, 670, 743
AcuI CTGAAG 1 cut(s) 348
AfiI CCNNNNNNNGG 1 cut(s) 228
AgsI TTSAA 4 cut(s) 38, 83, 393, 494
AhlI ACTAGT 2 cut(s) 19, 257
AjnI CCWGG 1 cut(s) 376
AluBI AGCT 2 cut(s) 27, 419
AluI AGCT 2 cut(s) 27, 419
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 2 cut(s) 287, 826
AlwNI CAGNNNCTG 1 cut(s) 401
Ama87I CYCGRG 1 cut(s) 474
AoxI GGCC 3 cut(s) 154, 323, 706
ApeKI GCWGC 3 cut(s) 404, 416, 599
ApoI RAATTY 4 cut(s) 169, 494, 670, 743
ArsI GACNNNNNNTTYG 2 cut(s) 226, 258
AsuHPI GGTGA 2 cut(s) 302, 314
AvaI CYCGRG 1 cut(s) 474
BanII GRGCYC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 336
BbvI GCAGC 3 cut(s) 416, 428, 611
BccI CCATC 3 cut(s) 146, 222, 744
BciT130I CCWGG 1 cut(s) 378
BcoDI GTCTC 1 cut(s) 392
BcuI ACTAGT 2 cut(s) 19, 257
BfaI CTAG 4 cut(s) 20, 158, 258, 264
BfmI CTRYAG 1 cut(s) 402
BisI GCNGC 5 cut(s) 107, 405, 408, 417, 600
BlsI GCNGC 5 cut(s) 108, 406, 409, 418, 601
Bme1390I CCNGG 1 cut(s) 378
BmeT110I CYCGRG 1 cut(s) 474
BmiI GGNNCC 1 cut(s) 382
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 3 cut(s) 43, 652, 745
BpiI GAAGAC 1 cut(s) 336
BsaAI YACGTR 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 206, 835
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 15
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 2 cut(s) 206, 835
BseGI GGATG 5 cut(s) 58, 586, 755, 760, 777
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 333
BseXI GCAGC 3 cut(s) 416, 428, 611
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 3 cut(s) 156, 325, 708
BsiHKCI CYCGRG 1 cut(s) 474
BslI CCNNNNNNNGG 1 cut(s) 228
BsmAI GTCTC 1 cut(s) 392
BsnI GGCC 3 cut(s) 156, 325, 708
BsoBI CYCGRG 1 cut(s) 474
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 3 cut(s) 92, 292, 831
BspACI CCGC 5 cut(s) 32, 50, 107, 408, 729
BspANI GGCC 3 cut(s) 156, 325, 708
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 1 cut(s) 50
BspHI TCATGA 1 cut(s) 822
BspLI GGNNCC 1 cut(s) 382
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 2 cut(s) 287, 826
BsrDI GCAATG 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 206, 835
BssMI GATC 3 cut(s) 92, 292, 831
BssNAI GTATAC 1 cut(s) 721
BssT1I CCWWGG 2 cut(s) 206, 835
Bst1107I GTATAC 1 cut(s) 721
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 3 cut(s) 242, 530, 560
BstAPI GCANNNNNTGC 1 cut(s) 764
BstBAI YACGTR 1 cut(s) 149
BstC8I GCNNGC 3 cut(s) 547, 765, 769
BstDEI CTNAG 2 cut(s) 189, 692
BstEII GGTNACC 1 cut(s) 302
BstF5I GGATG 5 cut(s) 58, 586, 755, 760, 777
BstFNI CGCG 1 cut(s) 50
BstKTI GATC 3 cut(s) 95, 295, 834
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 3 cut(s) 92, 292, 831
BstMWI GCNNNNNNNGC 3 cut(s) 413, 416, 764
BstNI CCWGG 1 cut(s) 378
BstNSI RCATGY 2 cut(s) 205, 549
BstPI GGTNACC 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 1 cut(s) 402
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 3 cut(s) 416, 428, 611
BstV2I GAAGAC 1 cut(s) 336
BstXI CCANNNNNNTGG 1 cut(s) 673
BstZ17I GTATAC 1 cut(s) 721
BsuRI GGCC 3 cut(s) 156, 325, 708
BtsCI GGATG 5 cut(s) 58, 586, 755, 760, 777
Cac8I GCNNGC 3 cut(s) 547, 765, 769
CaiI CAGNNNCTG 1 cut(s) 401
CciI TCATGA 1 cut(s) 822
CspCI CAANNNNNGTGG 4 cut(s) 188, 223, 296, 331
CviAII CATG 6 cut(s) 202, 334, 546, 603, 667, 823
DdeI CTNAG 2 cut(s) 189, 692
DpnI GATC 3 cut(s) 94, 294, 833
DpnII GATC 3 cut(s) 92, 292, 831
EciI GGCGGA 1 cut(s) 744
Eco130I CCWWGG 2 cut(s) 206, 835
Eco147I AGGCCT 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 348
Eco88I CYCGRG 1 cut(s) 474
Eco91I GGTNACC 1 cut(s) 302
EcoO65I GGTNACC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 376
EcoT14I CCWWGG 2 cut(s) 206, 835
EcoT38I GRGCYC 1 cut(s) 190
ErhI CCWWGG 2 cut(s) 206, 835
FaeI CATG 6 cut(s) 205, 337, 549, 606, 670, 826
FatI CATG 6 cut(s) 201, 333, 545, 602, 666, 822
FblI GTMKAC 1 cut(s) 720
Fnu4HI GCNGC 5 cut(s) 107, 405, 408, 417, 600
FokI GGATG 5 cut(s) 65, 593, 762, 764, 767
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 5 cut(s) 107, 405, 408, 417, 600
FspBI CTAG 4 cut(s) 20, 158, 258, 264
GluI GCNGC 5 cut(s) 107, 405, 408, 417, 600
HaeIII GGCC 3 cut(s) 156, 325, 708
Hin1II CATG 6 cut(s) 205, 337, 549, 606, 670, 826
HinfI GANTC 3 cut(s) 137, 625, 677
HphI GGTGA 2 cut(s) 302, 314
Hpy166II GTNNAC 1 cut(s) 721
Hpy188I TCNGA 3 cut(s) 175, 192, 445
Hpy188III TCNNGA 1 cut(s) 823
Hpy8I GTNNAC 1 cut(s) 721
HpyAV CCTTC 2 cut(s) 77, 698
HpyCH4III ACNGT 3 cut(s) 242, 530, 560
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 3 cut(s) 404, 416, 758
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 416, 764
HpyF3I CTNAG 2 cut(s) 189, 692
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 6 cut(s) 205, 337, 549, 606, 670, 826
Kzo9I GATC 3 cut(s) 92, 292, 831
LmnI GCTCC 2 cut(s) 542, 596
LpnPI CCDG 6 cut(s) 339, 363, 390, 470, 753, 777
Lsp1109I GCAGC 3 cut(s) 416, 428, 611
LweI GCATC 3 cut(s) 43, 652, 745
MaeI CTAG 4 cut(s) 20, 158, 258, 264
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 4 cut(s) 302, 361, 560, 736
MalI GATC 3 cut(s) 94, 294, 833
MboI GATC 3 cut(s) 92, 292, 831
MboII GAAGA 2 cut(s) 341, 414
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 5 cut(s) 169, 494, 584, 670, 743
MlyI GAGTC 2 cut(s) 634, 686
MnlI CCTC 2 cut(s) 123, 354
MseI TTAA 5 cut(s) 165, 249, 567, 774, 841
MslI CAYNNNNRTG 1 cut(s) 827
MspR9I CCNGG 1 cut(s) 378
MvaI CCWGG 1 cut(s) 378
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 3 cut(s) 413, 416, 764
NdeII GATC 3 cut(s) 92, 292, 831
NlaIII CATG 6 cut(s) 205, 337, 549, 606, 670, 826
NlaIV GGNNCC 1 cut(s) 382
NmuCI GTSAC 2 cut(s) 302, 560
NspI RCATGY 2 cut(s) 205, 549
PaeI GCATGC 1 cut(s) 549
PagI TCATGA 1 cut(s) 822
PceI AGGCCT 1 cut(s) 325
PfeI GAWTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 228
PkrI GCNGC 5 cut(s) 108, 406, 409, 418, 601
PleI GAGTC 2 cut(s) 633, 685
PpsI GAGTC 2 cut(s) 633, 685
Ppu21I YACGTR 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 376
PspEI GGTNACC 1 cut(s) 302
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 1 cut(s) 382
PstI CTGCAG 1 cut(s) 406
PstNI CAGNNNCTG 1 cut(s) 401
RseI CAYNNNNRTG 1 cut(s) 827
SaqAI TTAA 5 cut(s) 165, 249, 567, 774, 841
SatI GCNGC 5 cut(s) 107, 405, 408, 417, 600
Sau3AI GATC 3 cut(s) 92, 292, 831
SchI GAGTC 2 cut(s) 634, 686
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 1 cut(s) 190
SetI ASST 7 cut(s) 29, 104, 151, 382, 421, 464, 489
SfaNI GCATC 3 cut(s) 43, 652, 745
SfcI CTRYAG 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 827
SpeI ACTAGT 2 cut(s) 19, 257
SphI GCATGC 1 cut(s) 549
Sse9I AATT 5 cut(s) 169, 494, 584, 670, 743
SseBI AGGCCT 1 cut(s) 325
SsiI CCGC 5 cut(s) 32, 50, 107, 408, 729
SspMI CTAG 4 cut(s) 20, 158, 258, 264
StuI AGGCCT 1 cut(s) 325
StyD4I CCNGG 1 cut(s) 376
StyI CCWWGG 2 cut(s) 206, 835
TaaI ACNGT 3 cut(s) 242, 530, 560
TaiI ACGT 1 cut(s) 151
TaqI TCGA 1 cut(s) 346
TasI AATT 5 cut(s) 169, 494, 584, 670, 743
TauI GCSGC 2 cut(s) 109, 410
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 5 cut(s) 165, 249, 567, 774, 841
Tru9I TTAA 5 cut(s) 165, 249, 567, 774, 841
TseFI GTSAC 2 cut(s) 302, 560
TseI GCWGC 3 cut(s) 404, 416, 599
Tsp45I GTSAC 2 cut(s) 302, 560
TspDTI ATGAA 4 cut(s) 597, 683, 802, 839
Van91I CCANNNNNTGG 1 cut(s) 228
XapI RAATTY 4 cut(s) 169, 494, 670, 743
XceI RCATGY 2 cut(s) 205, 549
XmiI GTMKAC 1 cut(s) 720
XspI CTAG 4 cut(s) 20, 158, 258, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.