pycom06g08760

cellulase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000663
Physical Location & Seq
Reverse (-)
13975186 .. 13975425
240 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g08760.1

Sequence Viewer

Length: 240 bp
ATGATGCATGCGCAGGTGAATTTGGTTGGAGGATACTATGATGCAGGTGACAACGTAAAGTTTGGGTGGCCAATGGCATTTAGTGTCAGCTTGTTGAGTTGGGCTGCTGTGGAGTATCAGCAGCCGTTATTTTCTGCAAACCAGCTTGGATATCTCCATACTGCAATCCGTTGGGGCACAGATTACATACTGCAATGTCACTCTTCAGCCACCACATTTTATACCCAGGTTCCAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

80

Amino Acids

8.88

Weight (kDa)

5.72

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 4 - 77 2.5e-26 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23210 AT1G70710
fragaria_vesca FvH4_4g33940 FvH4_6g41450 FvH4_7g27772 FvH4_7g27773 FvH4_7g27774 FvH4_7g27775
malus_domestica MD00G1036700.v1.1 MD07G1097500.v1.1 MD11G1195000.v1.1 MD16G1021500.v1.1
prunus_persica Prupe.1G331000_v2.0.a1 Prupe.1G331000_v2.0.a1 Prupe.2G121700_v2.0.a1 Prupe.2G278700_v2.0.a1 Prupe.2G278800_v2.0.a1
pyrus_communis pycom01g19480 pycom03g11560 pycom06g08760 pycom16g01920
rosa_chinensis RchiOBHm_Chr1g0374571 RchiOBHm_Chr1g0374581 RchiOBHm_Chr1g0374591 RchiOBHm_Chr1g0374601 RchiOBHm_Chr1g0374611 RchiOBHm_Chr2g0157011 RchiOBHm_Chr4g0443471
rosa_laevigata RLG00000005926 RLG00000026724 RLG00000026725 RLG00000026726 RLG00000026727
rosa_multiflora Rmu_co8114132.1_g000001 Rmu_sc0004947.1_g000005 Rmu_sc0004947.1_g000006 Rmu_sc0004947.1_g000007 Rmu_sc0004947.1_g000008 Rmu_sc0009670.1_g000003 Rmu_sc0034696.1_g000001 Rmu_sc0037664.1_g000001 Rmu_ssc0000408.1_g000014
rosa_roxburghii Rroxscaffold_4G00283360 Rroxscaffold_4G00283370 Rroxscaffold_4G00283380 Rroxscaffold_5G00384020
rosa_rugosa Rorug01G0059600 Rorug01G0384100 Rorug01G0384200 Rorug01G0384200 Rorug02G0457500 Rorug04G0346500 Rorug04G0346500 Rorug07G0215300
rosa_samantha Rh1AG395000 Rh1AG395100 Rh1AG395200 Rh1AG395400 Rh1CG372800 Rh1CG372900 Rh1CG373000 Rh1CG373100 Rh1DG390300 Rh1DG390400 Rh1DG390500 Rh1DG390600 Rh2BG536600 Rh2DG545500 Rh4AG402000 Rh4CG429100 Rh4DG409100
rosa_wichuraiana Rw1G035030 Rw1G035040 Rw1G035050 Rw1G035060 Rw4G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 4, 35
Acc16I TGCGCA 1 cut(s) 12
Acc36I ACCTGC 2 cut(s) 4, 35
AcoI YGGCCR 1 cut(s) 68
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 189
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 2 cut(s) 90, 145
AluI AGCT 2 cut(s) 90, 145
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 2 cut(s) 104, 121
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 1 cut(s) 13
AsuHPI GGTGA 2 cut(s) 28, 59
BaeGI GKGCMC 1 cut(s) 179
BalI TGGCCA 1 cut(s) 70
BbvI GCAGC 2 cut(s) 91, 133
BceAI ACGGC 1 cut(s) 109
BciT130I CCWGG 1 cut(s) 227
BciVI GTATCC 1 cut(s) 26
BfuAI ACCTGC 2 cut(s) 4, 35
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 2 cut(s) 105, 122
BlsI GCNGC 2 cut(s) 106, 123
Bme1390I CCNGG 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 225
Bse3DI GCAATG 1 cut(s) 200
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 225
BseMI GCAATG 1 cut(s) 200
BseSI GKGCMC 1 cut(s) 179
BseXI GCAGC 2 cut(s) 91, 133
BshFI GGCC 1 cut(s) 70
BsnI GGCC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 179
BspANI GGCC 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 231
BspMI ACCTGC 2 cut(s) 4, 35
BsrDI GCAATG 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 9
BstHHI GCGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 225
BstSLI GKGCMC 1 cut(s) 179
BstV1I GCAGC 2 cut(s) 91, 133
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 70
BveI ACCTGC 2 cut(s) 4, 35
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 1 cut(s) 13
CviAII CATG 1 cut(s) 8
CviJI RGCY 6 cut(s) 70, 90, 104, 124, 145, 209
CviKI_1 RGCY 6 cut(s) 70, 90, 104, 124, 145, 209
EaeI YGGCCR 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
Eco32I GATATC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 225
EcoRV GATATC 1 cut(s) 152
EcoT22I ATGCAT 1 cut(s) 9
FaeI CATG 1 cut(s) 11
FaiI YATR 5 cut(s) 9, 39, 159, 188, 222
FatI CATG 1 cut(s) 7
Fnu4HI GCNGC 2 cut(s) 105, 122
Fsp4HI GCNGC 2 cut(s) 105, 122
FspI TGCGCA 1 cut(s) 12
GlaI GCGC 1 cut(s) 12
GluI GCNGC 2 cut(s) 105, 122
HaeIII GGCC 1 cut(s) 70
HhaI GCGC 1 cut(s) 13
Hin1II CATG 1 cut(s) 11
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HphI GGTGA 2 cut(s) 28, 59
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 5 cut(s) 7, 44, 137, 164, 193
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 1 cut(s) 11
HspAI GCGC 1 cut(s) 11
LpnPI CCDG 3 cut(s) 30, 155, 212
Lsp1109I GCAGC 2 cut(s) 91, 133
LweI GCATC 1 cut(s) 31
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 2 cut(s) 47, 197
MboII GAAGA 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 179
MlsI TGGCCA 1 cut(s) 70
MluCI AATT 2 cut(s) 19, 234
MluNI TGGCCA 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 7
MnlI CCTC 1 cut(s) 23
Mox20I TGGCCA 1 cut(s) 70
Mph1103I ATGCAT 1 cut(s) 9
MscI TGGCCA 1 cut(s) 70
MseI TTAA 1 cut(s) 238
Msp20I TGGCCA 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 2 cut(s) 47, 197
NsbI TGCGCA 1 cut(s) 12
NsiI ATGCAT 1 cut(s) 9
NspI RCATGY 1 cut(s) 11
PaeI GCATGC 1 cut(s) 11
PaqCI CACCTGC 2 cut(s) 4, 35
PkrI GCNGC 2 cut(s) 106, 123
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 238
SatI GCNGC 2 cut(s) 105, 122
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 1 cut(s) 179
SetI ASST 6 cut(s) 18, 49, 57, 92, 147, 231
SfaNI GCATC 1 cut(s) 31
SgeI CNNG 6 cut(s) 20, 26, 57, 103, 154, 158
SphI GCATGC 1 cut(s) 11
Sse9I AATT 2 cut(s) 19, 234
StyD4I CCNGG 1 cut(s) 225
TaiI ACGT 1 cut(s) 57
TasI AATT 2 cut(s) 19, 234
Tru1I TTAA 1 cut(s) 238
Tru9I TTAA 1 cut(s) 238
TseFI GTSAC 2 cut(s) 47, 197
TseI GCWGC 2 cut(s) 104, 121
Tsp45I GTSAC 2 cut(s) 47, 197
TspGWI ACGGA 1 cut(s) 158
XapI RAATTY 1 cut(s) 19
XceI RCATGY 1 cut(s) 11
Zsp2I ATGCAT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.