Rmu_sc0004947.1_g000005

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004947.1
OG0000663
Physical Location & Seq
Forward (+)
19654 .. 22670
3017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004947.1_g000005.1.cds

Sequence Viewer

Length: 1017 bp
atgagtctatttgggagattaaggacggtggttttactggcggcgatgatggtggtgatggtggtgaaggcttcgcaggactatggggatgcattgacgaagagcatattgttctttgagggccagaggtcagggaagctaccctctcgtcagagaatgacttggaggaaagattctgcacttaaggatggacttcagattggtgttgatttggtagggggttactacgatgccggtgacaatgtgaagttcaactttccgatggctttctcgacaaccatgctggcatggagcgtgttagagttcgggaaggacatgggtgcagacctaccccgtgcacttgatgccattcgatggggaacggactacttcctcaaagccacaagcattcctggctttgtgtttgcccaagttggcgaaccttacggcgaccacaattgttgggagaggcctgaggacatggacaccccaagaaacccctatgcagttagcaaacagttcccaggttctgaagtctcggcagagattgcagctgccctagctgcctcttccatggtttttaagcatgttgatttggaatactctgcaaggcttctcaaaagggctagaatgcaagccaatagagtagttcactgtaacaatgttgttgccagtccagctagacttgttcaagttgcaaaaggccaggtggattacatactaggaagtaacccattgaacatgtcgtatatggtcgggtatggcaaaaagtttcctcagagaattcatcatcgggggtcatcgttaccgtcggttggtcaacaccctaaacagattggttgcaaagacggaagcgtttactttaacagcagtaacccaaatcctaatatgctaactggggctgttgttggaggaccagatataaaggattcatatgaagattctcgagtggattttgtgcagtccgagccaaccacatacatcaatgcaccatttgtaggcgtcttggcttacttcaaatcgcatccatggtcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

338

Amino Acids

37.3

Weight (kDa)

8.95

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23210 AT1G70710
fragaria_vesca FvH4_4g33940 FvH4_6g41450 FvH4_7g27772 FvH4_7g27773 FvH4_7g27774 FvH4_7g27775
malus_domestica MD00G1036700.v1.1 MD07G1097500.v1.1 MD11G1195000.v1.1 MD16G1021500.v1.1
prunus_persica Prupe.1G331000_v2.0.a1 Prupe.1G331000_v2.0.a1 Prupe.2G121700_v2.0.a1 Prupe.2G278700_v2.0.a1 Prupe.2G278800_v2.0.a1
pyrus_communis pycom01g19480 pycom03g11560 pycom06g08760 pycom16g01920
rosa_chinensis RchiOBHm_Chr1g0374571 RchiOBHm_Chr1g0374581 RchiOBHm_Chr1g0374591 RchiOBHm_Chr1g0374601 RchiOBHm_Chr1g0374611 RchiOBHm_Chr2g0157011 RchiOBHm_Chr4g0443471
rosa_laevigata RLG00000005926 RLG00000026724 RLG00000026725 RLG00000026726 RLG00000026727
rosa_multiflora Rmu_co8114132.1_g000001 Rmu_sc0004947.1_g000005 Rmu_sc0004947.1_g000006 Rmu_sc0004947.1_g000007 Rmu_sc0004947.1_g000008 Rmu_sc0009670.1_g000003 Rmu_sc0034696.1_g000001 Rmu_sc0037664.1_g000001 Rmu_ssc0000408.1_g000014
rosa_roxburghii Rroxscaffold_4G00283360 Rroxscaffold_4G00283370 Rroxscaffold_4G00283380 Rroxscaffold_5G00384020
rosa_rugosa Rorug01G0059600 Rorug01G0384100 Rorug01G0384200 Rorug01G0384200 Rorug02G0457500 Rorug04G0346500 Rorug04G0346500 Rorug07G0215300
rosa_samantha Rh1AG395000 Rh1AG395100 Rh1AG395200 Rh1AG395400 Rh1CG372800 Rh1CG372900 Rh1CG373000 Rh1CG373100 Rh1DG390300 Rh1DG390400 Rh1DG390500 Rh1DG390600 Rh2BG536600 Rh2DG545500 Rh4AG402000 Rh4CG429100 Rh4DG409100
rosa_wichuraiana Rw1G035030 Rw1G035040 Rw1G035050 Rw1G035060 Rw4G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 354
AciI CCGC 1 cut(s) 41
AcsI RAATTY 1 cut(s) 762
AcuI CTGAAG 2 cut(s) 179, 531
AcyI GRCGYC 1 cut(s) 981
AfiI CCNNNNNNNGG 3 cut(s) 354, 794, 977
AflII CTTAAG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 720
AgsI TTSAA 4 cut(s) 253, 671, 718, 997
AjnI CCWGG 3 cut(s) 391, 502, 684
AluBI AGCT 4 cut(s) 139, 533, 542, 659
AluI AGCT 4 cut(s) 139, 533, 542, 659
Alw21I GWGCWC 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 520
Alw44I GTGCAC 1 cut(s) 336
AlwNI CAGNNNCTG 1 cut(s) 509
Ama87I CYCGRG 1 cut(s) 924
AoxI GGCC 3 cut(s) 121, 449, 682
ApaLI GTGCAC 1 cut(s) 336
ApeKI GCWGC 3 cut(s) 530, 533, 542
ApoI RAATTY 1 cut(s) 762
AspS9I GGNCC 3 cut(s) 121, 893, 1011
AsuHPI GGTGA 3 cut(s) 67, 76, 248
AvaI CYCGRG 1 cut(s) 924
AvaII GGWCC 2 cut(s) 893, 1011
AxyI CCTNAGG 1 cut(s) 453
BaeGI GKGCMC 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 340
BbvI GCAGC 3 cut(s) 520, 529, 542
BccI CCATC 5 cut(s) 43, 52, 182, 256, 348
BceAI ACGGC 1 cut(s) 442
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 3 cut(s) 393, 504, 686
BcoDI GTCTC 1 cut(s) 520
BfaI CTAG 4 cut(s) 539, 606, 660, 701
BfrI CTTAAG 1 cut(s) 182
BisI GCNGC 4 cut(s) 42, 531, 534, 543
BlsI GCNGC 4 cut(s) 43, 532, 535, 544
Bme1390I CCNGG 3 cut(s) 393, 504, 686
Bme18I GGWCC 2 cut(s) 893, 1011
BmeT110I CYCGRG 1 cut(s) 924
BmgT120I GGNCC 3 cut(s) 121, 893, 1011
BmrFI CCNGG 3 cut(s) 393, 504, 686
BmrI ACTGGG 1 cut(s) 885
BmsI GCATC 4 cut(s) 79, 220, 334, 1012
BmuI ACTGGG 1 cut(s) 885
BsaHI GRCGYC 1 cut(s) 981
BsaJI CCNNGG 3 cut(s) 502, 552, 1007
Bsc4I CCNNNNNNNGG 3 cut(s) 354, 794, 977
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 3 cut(s) 42, 651, 880
Bse21I CCTNAGG 1 cut(s) 453
BseBI CCWGG 3 cut(s) 393, 504, 686
BseDI CCNNGG 3 cut(s) 502, 552, 1007
BseGI GGATG 3 cut(s) 94, 193, 1003
BseLI CCNNNNNNNGG 3 cut(s) 354, 794, 977
BseMII CTCAG 2 cut(s) 444, 770
BseNI ACTGG 3 cut(s) 42, 651, 880
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 3 cut(s) 520, 529, 542
BsgI GTGCAG 3 cut(s) 162, 342, 959
BshFI GGCC 3 cut(s) 123, 451, 684
BsiHKAI GWGCWC 1 cut(s) 340
BsiHKCI CYCGRG 1 cut(s) 924
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 3 cut(s) 354, 794, 977
BsmAI GTCTC 1 cut(s) 520
BsmI GAATGC 2 cut(s) 387, 615
BsnI GGCC 3 cut(s) 123, 451, 684
BsoBI CYCGRG 1 cut(s) 924
Bsp1286I GDGCHC 1 cut(s) 340
Bsp19I CCATGG 2 cut(s) 552, 1007
BspACI CCGC 1 cut(s) 41
BspANI GGCC 3 cut(s) 123, 451, 684
BspCNI CTCAG 2 cut(s) 445, 769
BspQI GCTCTTC 1 cut(s) 95
BspTI CTTAAG 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 3 cut(s) 42, 651, 880
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 3 cut(s) 502, 552, 1007
BssNI GRCGYC 1 cut(s) 981
BssT1I CCWWGG 2 cut(s) 552, 1007
Bst2UI CCWGG 3 cut(s) 393, 504, 686
Bst4CI ACNGT 4 cut(s) 28, 498, 635, 789
Bst6I CTCTTC 2 cut(s) 95, 553
BstACI GRCGYC 1 cut(s) 981
BstAFI CTTAAG 1 cut(s) 182
BstAPI GCANNNNNTGC 2 cut(s) 344, 527
BstC8I GCNNGC 2 cut(s) 285, 615
BstDEI CTNAG 2 cut(s) 453, 756
BstDSI CCRYGG 2 cut(s) 552, 1007
BstF5I GGATG 3 cut(s) 94, 193, 1003
BstMAI GTCTC 1 cut(s) 520
BstMWI GCNNNNNNNGC 7 cut(s) 344, 393, 527, 539, 542, 656, 946
BstNI CCWGG 3 cut(s) 393, 504, 686
BstNSI RCATGY 2 cut(s) 569, 724
BstSCI CCNGG 3 cut(s) 391, 502, 684
BstSLI GKGCMC 1 cut(s) 340
BstV1I GCAGC 3 cut(s) 520, 529, 542
Bsu36I CCTNAGG 1 cut(s) 453
BsuRI GGCC 3 cut(s) 123, 451, 684
BtgI CCRYGG 2 cut(s) 552, 1007
BtgZI GCGATG 1 cut(s) 59
BtsCI GGATG 3 cut(s) 94, 193, 1003
BtsIMutI CAGTG 1 cut(s) 631
Cac8I GCNNGC 2 cut(s) 285, 615
CaiI CAGNNNCTG 1 cut(s) 509
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 3 cut(s) 121, 893, 1011
CseI GACGC 1 cut(s) 970
CspCI CAANNNNNGTGG 2 cut(s) 422, 457
CviAII CATG 8 cut(s) 280, 288, 316, 460, 553, 566, 721, 1008
DdeI CTNAG 2 cut(s) 453, 756
Eam1104I CTCTTC 2 cut(s) 95, 553
EarI CTCTTC 2 cut(s) 95, 553
Eco130I CCWWGG 2 cut(s) 552, 1007
Eco147I AGGCCT 1 cut(s) 451
Eco47I GGWCC 2 cut(s) 893, 1011
Eco57I CTGAAG 2 cut(s) 179, 531
Eco81I CCTNAGG 1 cut(s) 453
Eco88I CYCGRG 1 cut(s) 924
EcoRI GAATTC 1 cut(s) 762
EcoRII CCWGG 3 cut(s) 391, 502, 684
EcoT14I CCWWGG 2 cut(s) 552, 1007
EcoT22I ATGCAT 1 cut(s) 94
ErhI CCWWGG 2 cut(s) 552, 1007
FaeI CATG 8 cut(s) 283, 291, 319, 463, 556, 569, 724, 1011
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FatI CATG 8 cut(s) 279, 287, 315, 459, 552, 565, 720, 1007
FauNDI CATATG 1 cut(s) 913
Fnu4HI GCNGC 4 cut(s) 42, 531, 534, 543
FokI GGATG 3 cut(s) 101, 200, 990
Fsp4HI GCNGC 4 cut(s) 42, 531, 534, 543
FspBI CTAG 4 cut(s) 539, 606, 660, 701
GluI GCNGC 4 cut(s) 42, 531, 534, 543
HaeIII GGCC 3 cut(s) 123, 451, 684
HapII CCGG 1 cut(s) 234
HgaI GACGC 1 cut(s) 970
Hin1I GRCGYC 1 cut(s) 981
Hin1II CATG 8 cut(s) 283, 291, 319, 463, 556, 569, 724, 1011
HincII GTYRAC 1 cut(s) 800
HindII GTYRAC 1 cut(s) 800
HinfI GANTC 4 cut(s) 4, 173, 908, 920
HpaII CCGG 1 cut(s) 234
HphI GGTGA 3 cut(s) 67, 76, 248
Hpy166II GTNNAC 4 cut(s) 338, 631, 800, 838
Hpy188I TCNGA 6 cut(s) 153, 198, 261, 511, 759, 946
Hpy188III TCNNGA 3 cut(s) 271, 307, 924
Hpy8I GTNNAC 4 cut(s) 338, 631, 800, 838
Hpy99I CGWCG 1 cut(s) 793
HpyAV CCTTC 2 cut(s) 61, 304
HpyCH4III ACNGT 4 cut(s) 28, 498, 635, 789
HpyF10VI GCNNNNNNNGC 7 cut(s) 344, 393, 527, 539, 542, 656, 946
HpyF3I CTNAG 2 cut(s) 453, 756
Hsp92I GRCGYC 1 cut(s) 981
Hsp92II CATG 8 cut(s) 283, 291, 319, 463, 556, 569, 724, 1011
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 1 cut(s) 291
Lsp1109I GCAGC 3 cut(s) 520, 529, 542
LweI GCATC 4 cut(s) 79, 220, 334, 1012
MaeI CTAG 4 cut(s) 539, 606, 660, 701
MaeIII GTNAC 6 cut(s) 221, 236, 635, 707, 783, 851
MboII GAAGA 3 cut(s) 112, 540, 929
MfeI CAATTG 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 2 cut(s) 436, 762
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 868
Mph1103I ATGCAT 1 cut(s) 94
MseI TTAA 4 cut(s) 20, 183, 561, 843
MspA1I CMGCKG 1 cut(s) 533
MspCI CTTAAG 1 cut(s) 182
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 3 cut(s) 393, 504, 686
MunI CAATTG 1 cut(s) 436
Mva1269I GAATGC 2 cut(s) 387, 615
MvaI CCWGG 3 cut(s) 393, 504, 686
MwoI GCNNNNNNNGC 7 cut(s) 344, 393, 527, 539, 542, 656, 946
NcoI CCATGG 2 cut(s) 552, 1007
NdeI CATATG 1 cut(s) 913
NlaIII CATG 8 cut(s) 283, 291, 319, 463, 556, 569, 724, 1011
NmeAIII GCCGAG 1 cut(s) 497
NmuCI GTSAC 1 cut(s) 236
NsiI ATGCAT 1 cut(s) 94
NspI RCATGY 2 cut(s) 569, 724
PaeR7I CTCGAG 1 cut(s) 924
PceI AGGCCT 1 cut(s) 451
PciI ACATGT 1 cut(s) 720
PciSI GCTCTTC 1 cut(s) 95
PctI GAATGC 2 cut(s) 387, 615
PfeI GAWTC 3 cut(s) 173, 908, 920
PflMI CCANNNNNTGG 1 cut(s) 354
PkrI GCNGC 4 cut(s) 43, 532, 535, 544
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PscI ACATGT 1 cut(s) 720
Psp6I CCWGG 3 cut(s) 391, 502, 684
PspGI CCWGG 3 cut(s) 391, 502, 684
PspPI GGNCC 3 cut(s) 121, 893, 1011
PstNI CAGNNNCTG 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 533
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 4 cut(s) 20, 183, 561, 843
SatI GCNGC 4 cut(s) 42, 531, 534, 543
Sau96I GGNCC 3 cut(s) 121, 893, 1011
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 3 cut(s) 393, 504, 686
SduI GDGCHC 1 cut(s) 340
SetI ASST 9 cut(s) 131, 141, 330, 424, 508, 535, 544, 661, 690
SfaNI GCATC 4 cut(s) 79, 220, 334, 1012
Sfr274I CTCGAG 1 cut(s) 924
SinI GGWCC 2 cut(s) 893, 1011
SlaI CTCGAG 1 cut(s) 924
SmlI CTYRAG 2 cut(s) 182, 924
SmoI CTYRAG 2 cut(s) 182, 924
Sse9I AATT 2 cut(s) 436, 762
SseBI AGGCCT 1 cut(s) 451
SsiI CCGC 1 cut(s) 41
SspMI CTAG 4 cut(s) 539, 606, 660, 701
StuI AGGCCT 1 cut(s) 451
StyD4I CCNGG 3 cut(s) 391, 502, 684
StyI CCWWGG 2 cut(s) 552, 1007
TaaI ACNGT 4 cut(s) 28, 498, 635, 789
TaqI TCGA 3 cut(s) 272, 352, 925
TasI AATT 2 cut(s) 436, 762
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 3 cut(s) 173, 908, 920
Tru1I TTAA 4 cut(s) 20, 183, 561, 843
Tru9I TTAA 4 cut(s) 20, 183, 561, 843
TscAI CASTG 1 cut(s) 638
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 3 cut(s) 530, 533, 542
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 3 cut(s) 755, 900, 930
TspGWI ACGGA 2 cut(s) 377, 843
TspRI CASTG 1 cut(s) 638
Van91I CCANNNNNTGG 1 cut(s) 354
Vha464I CTTAAG 1 cut(s) 182
VneI GTGCAC 1 cut(s) 336
VpaK11BI GGWCC 2 cut(s) 893, 1011
XapI RAATTY 1 cut(s) 762
XceI RCATGY 2 cut(s) 569, 724
XhoI CTCGAG 1 cut(s) 924
XspI CTAG 4 cut(s) 539, 606, 660, 701
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.