Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001676

Physical Location & Seq

Genomic Coordinates Reverse (-)

48124976 .. 48127281

Gene Structure 2306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG263900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCTGCTAACAACATTCCAATGGGTTTGGATAAGGAACAGGTACCGTCCCCCGATGTTGCTGAAGGACATCAATTTAAAAATGCTTCTTTGCTGGCAGACTTGGCTGGTGCAAGGGTACCTCCAAGGGGAAGGACACTGCAATCAGAGACCAAGCTTCAGTGCTATGAACCTATAACGATGAAATACTTAGGATATTATCCTGCATTGACACCTGATGTGGTTGGTTTTTTCTTTTTTTGTGTACATTTGGCTTGGGGTTGTGGATTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldedh

Protein Analysis

91

Amino Acids

9.97

Weight (kDa)

6.02

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66658 AT3G66658
fragaria_vesca	FvH4_4g19600
malus_domestica	MD13G1155400.v1.1 MD16G1154800.v1.1
prunus_persica	Prupe.1G118500_v2.0.a1 Prupe.1G118500_v2.0.a1
pyrus_communis	pycom13g13230 pycom16g13120
rosa_chinensis	RchiOBHm_Chr1g0319361 RchiOBHm_Chr3g0485871 RchiOBHm_Chr4g0424861
rosa_laevigata	RLG00000007414 RLG00000030077
rosa_multiflora	Rmu_sc0005870.1_g000002 Rmu_sc0006754.1_g000006 Rmu_sc0014506.1_g000007 Rmu_sc0016377.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225740 Rroxscaffold_4G00328540 Rroxscaffold_5G00367080
rosa_rugosa	Rorug01G0166300 Rorug02G0293100 Rorug02G0554900 Rorug04G0192400 Rorug04G0199800 Rorug04G0346500
rosa_samantha	Rh1BG349600 Rh1CG003900 Rh1CG038200 Rh1DG031700 Rh1DG139100 Rh1DG263900 Rh2AG629500 Rh2CG592700 Rh2DG371100 Rh2DG650900 Rh2DG656600 Rh3AG263700 Rh3CG371400 Rh4AG036400 Rh4AG043400 Rh4AG077000 Rh4AG257500 Rh4CG273800 Rh4DG258600 Rh7BG306900
rosa_wichuraiana	Rw1G003140 Rw4G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	43, 118
AccB1I	GGYRCC	2 cut(s)	43, 118
AcuI	CTGAAG	2 cut(s)	84, 143
AfaI	GTAC	3 cut(s)	45, 120, 246
AfiI	CCNNNNNNNGG	1 cut(s)	128
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	5
Asp718I	GGTACC	2 cut(s)	43, 118
BanI	GGYRCC	2 cut(s)	43, 118
BcoDI	GTCTC	1 cut(s)	143
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	45, 120
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	125
BseLI	CCNNNNNNNGG	1 cut(s)	128
BshNI	GGYRCC	2 cut(s)	43, 118
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	34
Bso31I	GGTCTC	1 cut(s)	143
Bsp1407I	TGTACA	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	45, 120
BspT107I	GGYRCC	2 cut(s)	43, 118
BspTNI	GGTCTC	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	190
BstMAI	GTCTC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	2 cut(s)	137, 167
Cac8I	GCNNGC	1 cut(s)	96
Csp6I	GTAC	3 cut(s)	44, 119, 245
CviJI	RGCY	4 cut(s)	5, 107, 157, 254
CviKI_1	RGCY	4 cut(s)	5, 107, 157, 254
CviQI	GTAC	3 cut(s)	44, 119, 245
DdeI	CTNAG	1 cut(s)	190
DraI	TTTAAA	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	84, 143
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaiI	YATR	2 cut(s)	168, 176
FaqI	GGGAC	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	59, 126
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	113, 142, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	190
KpnI	GGTACC	2 cut(s)	47, 122
LpnPI	CCDG	5 cut(s)	26, 80, 93, 216, 228
MluCI	AATT	1 cut(s)	74
MnlI	CCTC	1 cut(s)	132
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	104
NlaIV	GGNNCC	2 cut(s)	45, 120
PkrI	GCNGC	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	45, 120
RsaI	GTAC	3 cut(s)	45, 120, 246
RsaNI	GTAC	3 cut(s)	44, 119, 245
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	1 cut(s)	6
SetI	ASST	5 cut(s)	45, 124, 159, 175, 217
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	48
TasI	AATT	1 cut(s)	74
TatI	WGTACW	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	2 cut(s)	144, 167
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	183, 197
TspRI	CASTG	2 cut(s)	144, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.