Rh1BG349600

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001676
Physical Location & Seq
Reverse (-)
48232071 .. 48233717
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG349600.1

Sequence Viewer

Length: 483 bp
ATGCTGAATATTTTACAGGTTATGACTCAGACAGTTGGGTGCAAGCCTCAAGCATACAAGCTAGAAATTCTCAGAGATATCAGTGGCATCATCAAACCATCAAGGATGACTCTATTGCTTGGCCCTCCAGGCTGTGGGAAATCCACTTTATTACAGGCGCTTGCAGGGAAACCTAACCATTCTCTCAAGGCCATTTCGGTAGAAGGGTTGAAAAAATCTCTCATGACAGACTACATAATAAAGATCCTTGGGCTAGACATTTGTGCTGAGACAATCGTAGGAGATCCAATGCAAAGAGGAATTTCGGGTGGCCAAAAGAAAAGACTAACAACAGGTAATTTTGGATATCACCCTGCATTGACACTTGATGAGGTCAAGGAGCGGGTACCACTAGCAAGGAACACAAAAAACATCGGCAAAGATCAAGCAAGGTCGCATGTTTCTTCAGATTGTACTCTCAAGTACATAATAGAACACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

160

Amino Acids

17.43

Weight (kDa)

9.54

Isoelectric Point (pI)

29.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 24 - 65 6.1e-07 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 385
AccB1I GGYRCC 1 cut(s) 385
AccB7I CCANNNNNTGG 1 cut(s) 134
AccBSI CCGCTC 1 cut(s) 382
AciI CCGC 1 cut(s) 382
AclWI GGATC 2 cut(s) 238, 278
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 2 cut(s) 66, 300
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 3 cut(s) 387, 454, 464
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 2 cut(s) 238, 278
AoxI GGCC 3 cut(s) 121, 189, 310
ApoI RAATTY 2 cut(s) 66, 300
Asp718I GGTACC 1 cut(s) 385
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 341
BalI TGGCCA 1 cut(s) 312
BanI GGYRCC 1 cut(s) 385
BccI CCATC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 3 cut(s) 62, 254, 392
BfoI RGCGCY 1 cut(s) 161
BglI GCCNNNNNGGC 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 387
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 111
BpuEI CTTGAG 3 cut(s) 33, 170, 443
BsaJI CCNNGG 1 cut(s) 247
Bsc4I CCNNNNNNNGG 1 cut(s) 134
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 3 cut(s) 41, 85, 258
BshFI GGCC 3 cut(s) 123, 191, 312
BshNI GGYRCC 1 cut(s) 385
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 263
BsnI GGCC 3 cut(s) 123, 191, 312
Bsp143I GATC 3 cut(s) 243, 283, 421
BspACI CCGC 1 cut(s) 382
BspANI GGCC 3 cut(s) 123, 191, 312
BspCNI CTCAG 3 cut(s) 40, 84, 259
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 387
BspPI GGATC 2 cut(s) 238, 278
BspT107I GGYRCC 1 cut(s) 385
BsrBI CCGCTC 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 3 cut(s) 243, 283, 421
BssT1I CCWWGG 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 34
BstC8I GCNNGC 2 cut(s) 44, 162
BstDEI CTNAG 3 cut(s) 27, 71, 267
BstF5I GGATG 1 cut(s) 111
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 3 cut(s) 246, 286, 424
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 3 cut(s) 243, 283, 421
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 127
BstX2I RGATCY 2 cut(s) 243, 283
BstYI RGATCY 2 cut(s) 243, 283
BsuRI GGCC 3 cut(s) 123, 191, 312
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 44, 162
CciI TCATGA 1 cut(s) 222
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 3 cut(s) 386, 453, 463
CviAII CATG 2 cut(s) 223, 437
CviJI RGCY 7 cut(s) 46, 61, 123, 132, 191, 253, 312
CviKI_1 RGCY 7 cut(s) 46, 61, 123, 132, 191, 253, 312
CviQI GTAC 3 cut(s) 386, 453, 463
DdeI CTNAG 3 cut(s) 27, 71, 267
DpnI GATC 3 cut(s) 245, 285, 423
DpnII GATC 3 cut(s) 243, 283, 421
EaeI YGGCCR 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 247
Eco32I GATATC 2 cut(s) 79, 347
Eco57I CTGAAG 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 127
EcoRV GATATC 2 cut(s) 79, 347
EcoT14I CCWWGG 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 2 cut(s) 226, 440
FaiI YATR 7 cut(s) 23, 55, 224, 236, 438, 467, 481
FatI CATG 2 cut(s) 222, 436
FauI CCCGC 1 cut(s) 375
FokI GGATG 1 cut(s) 118
FspBI CTAG 3 cut(s) 62, 254, 392
GlaI GCGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 111
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 3 cut(s) 123, 191, 312
HhaI GCGC 1 cut(s) 160
Hin1II CATG 2 cut(s) 226, 440
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 2 cut(s) 25, 109
HphI GGTGA 1 cut(s) 341
Hpy188I TCNGA 3 cut(s) 30, 74, 448
Hpy188III TCNNGA 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 4 cut(s) 42, 164, 292, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpyF3I CTNAG 3 cut(s) 27, 71, 267
Hsp92II CATG 2 cut(s) 226, 440
HspAI GCGC 1 cut(s) 158
KpnI GGTACC 1 cut(s) 389
Kzo9I GATC 3 cut(s) 243, 283, 421
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 7 cut(s) 2, 114, 140, 141, 150, 318, 366
LweI GCATC 1 cut(s) 96
MaeI CTAG 3 cut(s) 62, 254, 392
MalI GATC 3 cut(s) 245, 285, 423
MbiI CCGCTC 1 cut(s) 382
MboI GATC 3 cut(s) 243, 283, 421
MboII GAAGA 1 cut(s) 435
MflI RGATCY 2 cut(s) 243, 283
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 3 cut(s) 66, 300, 337
MluNI TGGCCA 1 cut(s) 312
MlyI GAGTC 2 cut(s) 19, 103
MnlI CCTC 4 cut(s) 57, 135, 290, 364
Mox20I TGGCCA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 129
NdeII GATC 3 cut(s) 243, 283, 421
NlaIII CATG 2 cut(s) 226, 440
NlaIV GGNNCC 1 cut(s) 387
NspI RCATGY 1 cut(s) 440
PagI TCATGA 1 cut(s) 222
PflMI CCANNNNNTGG 1 cut(s) 134
PleI GAGTC 2 cut(s) 19, 103
PpsI GAGTC 2 cut(s) 19, 103
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 387
PspPI GGNCC 1 cut(s) 122
PsuI RGATCY 2 cut(s) 243, 283
RsaI GTAC 3 cut(s) 387, 454, 464
RsaNI GTAC 3 cut(s) 386, 453, 463
Sau3AI GATC 3 cut(s) 243, 283, 421
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 2 cut(s) 19, 103
ScrFI CCNGG 1 cut(s) 129
SetI ASST 6 cut(s) 21, 63, 175, 337, 375, 434
SfaNI GCATC 1 cut(s) 96
SmlI CTYRAG 3 cut(s) 48, 185, 458
SmoI CTYRAG 3 cut(s) 48, 185, 458
Sse9I AATT 3 cut(s) 66, 300, 337
SsiI CCGC 1 cut(s) 382
SspI AATATT 1 cut(s) 10
SspMI CTAG 3 cut(s) 62, 254, 392
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 34
TasI AATT 3 cut(s) 66, 300, 337
TatI WGTACW 2 cut(s) 452, 462
TscAI CASTG 1 cut(s) 88
TspRI CASTG 1 cut(s) 88
Van91I CCANNNNNTGG 1 cut(s) 134
XapI RAATTY 2 cut(s) 66, 300
XceI RCATGY 1 cut(s) 440
XspI CTAG 3 cut(s) 62, 254, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.