Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001676

Physical Location & Seq

Genomic Coordinates Reverse (-)

34770345 .. 34770971

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0199800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTGGGGCAGAGACCATTTCTTTGTTGTTGGGAGGATTTCATGGGATTTCAGAAGGAAAACAGACCACAATACTGATTGGGGTAGTAAATTCCGCTTCTTGCCGGAGTCCATGAATATGACTATGTTGTCAATTGAAGGAAGCTCATGGACAAATGATATTGCTATACCATACCCTACAGGCTTTCACCCTGCAAAGGATAGTGAGGTGTTACAATGGCAGAACAAAATGAGAAAACAAGAAAGGCCTTACTTGTTTGCTTTTGTTGGGGGACCGAGGCCTGAGCTAGAAACTTCAATTCGGGGTAAACTTATTGAACAGTGCCAAACTTCAAGTACTTGCAAGTTACTAGATTGCAATTCAGGCCGGAACAATTGTGCTCAACCTGTTACAATTATGAGGGTGTTTCAAAGATCAGTCGATTGCTTGCAGCCTACAGGGGATTCATACACTAGGATATCCGCTTTTGACTCTTTCCTAGCTGGTTGTATCCCCGTTTTCTTTCATCCAGGTAGCGCTTATACCCAATACTTATGGCATCTACCAAAGAATCACACCAAGTATTCGGTGTTGATTCCGTTAAGGATGCTGTTTGAGCCCAAAAGTAATTTTGGCAATATCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldedh

Protein Analysis

208

Amino Acids

24.06

Weight (kDa)

9.08

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	3 - 199	3e-48	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G66658 AT3G66658
fragaria_vesca	FvH4_4g19600
malus_domestica	MD13G1155400.v1.1 MD16G1154800.v1.1
prunus_persica	Prupe.1G118500_v2.0.a1 Prupe.1G118500_v2.0.a1
pyrus_communis	pycom13g13230 pycom16g13120
rosa_chinensis	RchiOBHm_Chr1g0319361 RchiOBHm_Chr3g0485871 RchiOBHm_Chr4g0424861
rosa_laevigata	RLG00000007414 RLG00000030077
rosa_multiflora	Rmu_sc0005870.1_g000002 Rmu_sc0006754.1_g000006 Rmu_sc0014506.1_g000007 Rmu_sc0016377.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225740 Rroxscaffold_4G00328540 Rroxscaffold_5G00367080
rosa_rugosa	Rorug01G0166300 Rorug02G0293100 Rorug02G0554900 Rorug04G0192400 Rorug04G0199800 Rorug04G0346500
rosa_samantha	Rh1BG349600 Rh1CG003900 Rh1CG038200 Rh1DG031700 Rh1DG139100 Rh1DG263900 Rh2AG629500 Rh2CG592700 Rh2DG371100 Rh2DG650900 Rh2DG656600 Rh3AG263700 Rh3CG371400 Rh4AG036400 Rh4AG043400 Rh4AG077000 Rh4AG257500 Rh4CG273800 Rh4DG258600 Rh7BG306900
rosa_wichuraiana	Rw1G003140 Rw4G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	127
AciI	CCGC	2 cut(s)	94, 462
AcsI	RAATTY	1 cut(s)	89
AfaI	GTAC	1 cut(s)	337
AfeI	AGCGCT	1 cut(s)	517
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	5 cut(s)	137, 297, 317, 333, 410
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	3 cut(s)	144, 286, 482
AluI	AGCT	3 cut(s)	144, 286, 482
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	1 cut(s)	6
Aor51HI	AGCGCT	1 cut(s)	517
AoxI	GGCC	3 cut(s)	245, 278, 364
ApeKI	GCWGC	1 cut(s)	430
ApoI	RAATTY	1 cut(s)	89
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	518
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	442
BciT130I	CCWGG	1 cut(s)	510
BciVI	GTATCC	1 cut(s)	500
BcoDI	GTCTC	1 cut(s)	6
BfaI	CTAG	4 cut(s)	287, 350, 453, 479
BfmI	CTRYAG	2 cut(s)	177, 435
BfoI	RGCGCY	1 cut(s)	519
BfuI	GTATCC	1 cut(s)	500
BisI	GCNGC	1 cut(s)	431
BlsI	GCNGC	1 cut(s)	432
BmcAI	AGTACT	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	2 cut(s)	547, 576
Bpu10I	CCTNAGC	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	2 cut(s)	505, 591
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	442
BshFI	GGCC	3 cut(s)	247, 280, 366
BsiHKAI	GWGCWC	1 cut(s)	382
BsiSI	CCGG	2 cut(s)	104, 367
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	6
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	3 cut(s)	247, 280, 366
Bso31I	GGTCTC	1 cut(s)	6
Bsp1286I	GDGCHC	2 cut(s)	382, 600
Bsp143I	GATC	1 cut(s)	413
BspACI	CCGC	2 cut(s)	94, 462
BspANI	GGCC	3 cut(s)	247, 280, 366
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	273
BspTNI	GGTCTC	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	1 cut(s)	413
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	505, 591
BstH2I	RGCGCY	1 cut(s)	519
BstHHI	GCGC	1 cut(s)	518
BstKTI	GATC	1 cut(s)	416
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	413
BstMWI	GCNNNNNNNGC	2 cut(s)	363, 595
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	2 cut(s)	177, 435
BstV1I	GCAGC	1 cut(s)	442
BsuI	GTATCC	1 cut(s)	500
BsuRI	GGCC	3 cut(s)	247, 280, 366
BtsCI	GGATG	2 cut(s)	505, 591
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	1 cut(s)	428
CfoI	GCGC	1 cut(s)	518
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	3 cut(s)	42, 112, 147
CviJI	RGCY	9 cut(s)	144, 183, 247, 280, 286, 366, 433, 482, 598
CviKI_1	RGCY	9 cut(s)	144, 183, 247, 280, 286, 366, 433, 482, 598
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	1 cut(s)	415
DpnII	GATC	1 cut(s)	413
DrdI	GACNNNNNNGTC	1 cut(s)	127
DseDI	GACNNNNNNGTC	1 cut(s)	127
Eco147I	AGGCCT	2 cut(s)	247, 280
Eco24I	GRGCYC	1 cut(s)	600
Eco31I	GGTCTC	1 cut(s)	6
Eco32I	GATATC	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	272
Eco47III	AGCGCT	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	508
EcoRV	GATATC	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	600
FaeI	CATG	3 cut(s)	45, 115, 150
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	3 cut(s)	41, 111, 146
Fnu4HI	GCNGC	1 cut(s)	431
FokI	GGATG	2 cut(s)	492, 598
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	1 cut(s)	431
FspBI	CTAG	4 cut(s)	287, 350, 453, 479
GlaI	GCGC	1 cut(s)	517
GluI	GCNGC	1 cut(s)	431
HaeII	RGCGCY	1 cut(s)	519
HaeIII	GGCC	3 cut(s)	247, 280, 366
HapII	CCGG	2 cut(s)	104, 367
HhaI	GCGC	1 cut(s)	518
Hin1II	CATG	3 cut(s)	45, 115, 150
Hin6I	GCGC	1 cut(s)	516
HinP1I	GCGC	1 cut(s)	516
HinfI	GANTC	5 cut(s)	107, 443, 470, 550, 574
HpaII	CCGG	2 cut(s)	104, 367
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	308
HpyAV	CCTTC	2 cut(s)	48, 131
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4V	TGCA	4 cut(s)	194, 342, 357, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	363, 595
HpyF3I	CTNAG	1 cut(s)	282
Hsp92II	CATG	3 cut(s)	45, 115, 150
HspAI	GCGC	1 cut(s)	516
Kzo9I	GATC	1 cut(s)	413
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	2 cut(s)	547, 576
MaeI	CTAG	4 cut(s)	287, 350, 453, 479
MaeIII	GTNAC	3 cut(s)	210, 345, 388
MalI	GATC	1 cut(s)	415
MboI	GATC	1 cut(s)	413
MfeI	CAATTG	2 cut(s)	132, 373
MhlI	GDGCHC	2 cut(s)	382, 600
MluCI	AATT	7 cut(s)	89, 132, 297, 358, 373, 393, 607
MlyI	GAGTC	2 cut(s)	116, 464
MnlI	CCTC	4 cut(s)	27, 199, 270, 393
MseI	TTAA	1 cut(s)	581
MslI	CAYNNNNRTG	1 cut(s)	116
MspI	CCGG	2 cut(s)	104, 367
MspR9I	CCNGG	1 cut(s)	510
MunI	CAATTG	2 cut(s)	132, 373
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	2 cut(s)	363, 595
NdeII	GATC	1 cut(s)	413
NlaIII	CATG	3 cut(s)	45, 115, 150
NlaIV	GGNNCC	1 cut(s)	273
PceI	AGGCCT	2 cut(s)	247, 280
PfeI	GAWTC	3 cut(s)	443, 550, 574
PkrI	GCNGC	1 cut(s)	432
PleI	GAGTC	2 cut(s)	115, 464
PpsI	GAGTC	2 cut(s)	115, 464
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	272
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	581
SatI	GCNGC	1 cut(s)	431
Sau3AI	GATC	1 cut(s)	413
Sau96I	GGNCC	1 cut(s)	272
ScaI	AGTACT	1 cut(s)	337
SchI	GAGTC	2 cut(s)	116, 464
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	2 cut(s)	382, 600
SetI	ASST	6 cut(s)	146, 210, 288, 388, 484, 514
SfaNI	GCATC	2 cut(s)	547, 576
SfcI	CTRYAG	2 cut(s)	177, 435
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	116
Sse9I	AATT	7 cut(s)	89, 132, 297, 358, 373, 393, 607
SseBI	AGGCCT	2 cut(s)	247, 280
SsiI	CCGC	2 cut(s)	94, 462
SspMI	CTAG	4 cut(s)	287, 350, 453, 479
StuI	AGGCCT	2 cut(s)	247, 280
StyD4I	CCNGG	1 cut(s)	508
TaaI	ACNGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	420
TaqII	GACCGA	1 cut(s)	289
TasI	AATT	7 cut(s)	89, 132, 297, 358, 373, 393, 607
TatI	WGTACW	1 cut(s)	335
TfiI	GAWTC	3 cut(s)	443, 550, 574
Tru1I	TTAA	1 cut(s)	581
Tru9I	TTAA	1 cut(s)	581
TscAI	CASTG	1 cut(s)	326
TseI	GCWGC	1 cut(s)	430
TspDTI	ATGAA	4 cut(s)	30, 128, 435, 494
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	89
XspI	CTAG	4 cut(s)	287, 350, 453, 479
ZrmI	AGTACT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.