Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000431.1

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

50993 .. 52092

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atggaccaatcaagaattctatgggttctgtcaagaatcaaggtccatccccaatttcttccacctcgaccaaatttctacccatctccacaaaccctggtgccaccttattcatgtggtgggtacaattttcaagggcagggtggttctacttcagcaagttctgtccctcatcgtctaccaccgcaaggcgtatctccggttaatagtgctggtccagtagtctctggtttgcttgggtcgctaatggcacaaggtgtgatctcattgaaaaatcaaagcagaggaggactggagggtactggttcactaaattatgtacctcttgtaccacagcaaggggcattgcctgttcaaaatgctgctgctgatgttccagtagtagttcctggtttgattgattctttcctggcacaaggtgtcatttcgttgaagaaacaaagcccggtactaaaagaggagaaggatgctgtggtaggatgtgagttttccggccttgatctaaatctgagtcgcgtatctgtggtaatcggcttgtatgagggtggtctgcctagtcaatgtaaaagctgtggcctcccgttcaagtgtgaagaacagcacagcagccatatggattggcatgttaagaagaaccggatgtccaaaacccgcaagcagaagccctctcgtaacttttatgcaactacaagcatgtggcttgtcactgatgtagaggctgaggctgaggcattaccttctggtgtagttttgtgccttgctgacaccagtggcgtggcagaaaataaaaggaagactagtgatgaagaaatggttgttcctgcggacgaggatcagagtaaatgtgccttatgcacagatgcttttgttgagttttatagtcatgagacagatgagtggatgtataaaggtgctgtttacttgaatgcacctcaggggccagcgccggagatggatcggtcaaagttgggtcctatagtccatgccaaatgctggtcggagggtagtaggaaacgtctgcagaggacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

343

Amino Acids

37.14

Weight (kDa)

7.56

Isoelectric Point (pI)

62.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_PCFS4	PF23228	268 - 334	7.3e-28	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	100
AccB7I	CCANNNNNTGG	1 cut(s)	993
AccI	GTMKAC	1 cut(s)	178
AccII	CGCG	1 cut(s)	516
AciI	CCGC	3 cut(s)	185, 652, 824
AclWI	GGATC	2 cut(s)	840, 963
AcsI	RAATTY	2 cut(s)	15, 73
AcuI	CTGAAG	1 cut(s)	138
AdeI	CACNNNGTG	2 cut(s)	257, 419
AfaI	GTAC	5 cut(s)	125, 301, 321, 330, 450
AfiI	CCNNNNNNNGG	3 cut(s)	188, 338, 993
AgsI	TTSAA	6 cut(s)	134, 271, 356, 433, 586, 925
AhlI	ACTAGT	1 cut(s)	797
AjnI	CCWGG	3 cut(s)	96, 388, 408
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
AloI	GAACNNNNNNTCC	2 cut(s)	626, 658
AluBI	AGCT	1 cut(s)	570
AluI	AGCT	1 cut(s)	570
Alw26I	GTCTC	2 cut(s)	229, 881
AlwI	GGATC	2 cut(s)	840, 963
AoxI	GGCC	3 cut(s)	493, 574, 938
ApeKI	GCWGC	3 cut(s)	362, 365, 606
ApoI	RAATTY	2 cut(s)	15, 73
AspLEI	GCGC	1 cut(s)	946
AspS9I	GGNCC	5 cut(s)	4, 43, 215, 938, 971
AsuC2I	CCSGG	1 cut(s)	446
AvaII	GGWCC	4 cut(s)	4, 43, 215, 971
AxyI	CCTNAGG	1 cut(s)	933
BanI	GGYRCC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	800
BbvCI	CCTCAGC	2 cut(s)	720, 726
BbvI	GCAGC	3 cut(s)	349, 352, 618
BccI	CCATC	3 cut(s)	54, 91, 946
BciT130I	CCWGG	3 cut(s)	98, 390, 410
BcnI	CCSGG	1 cut(s)	446
BcoDI	GTCTC	2 cut(s)	229, 881
BcuI	ACTAGT	1 cut(s)	797
BfaI	CTAG	2 cut(s)	555, 798
BfmI	CTRYAG	2 cut(s)	975, 1019
BfoI	RGCGCY	1 cut(s)	947
BisI	GCNGC	3 cut(s)	363, 366, 607
BlsI	GCNGC	3 cut(s)	364, 367, 608
Bme1390I	CCNGG	4 cut(s)	98, 390, 410, 446
Bme18I	GGWCC	4 cut(s)	4, 43, 215, 971
BmgT120I	GGNCC	5 cut(s)	4, 43, 215, 938, 971
BmiI	GGNNCC	3 cut(s)	102, 939, 972
BmrFI	CCNGG	4 cut(s)	98, 390, 410, 446
BmsI	GCATC	2 cut(s)	457, 850
BpiI	GAAGAC	1 cut(s)	800
BpmI	CTGGAG	1 cut(s)	314
Bpu10I	CCTNAGC	2 cut(s)	720, 726
BpuMI	CCSGG	1 cut(s)	446
BsaBI	GATNNNNATC	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	2 cut(s)	199, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 338, 993
Bse1I	ACTGG	5 cut(s)	218, 297, 307, 377, 768
Bse21I	CCTNAGG	1 cut(s)	933
Bse3DI	GCAATG	1 cut(s)	344
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	3 cut(s)	98, 390, 410
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	5 cut(s)	46, 472, 485, 645, 906
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	3 cut(s)	188, 338, 993
BseMI	GCAATG	1 cut(s)	344
BseMII	CTCAG	4 cut(s)	500, 711, 717, 947
BseNI	ACTGG	5 cut(s)	218, 297, 307, 377, 768
BseRI	GAGGAG	2 cut(s)	300, 473
BseXI	GCAGC	3 cut(s)	349, 352, 618
Bsh1236I	CGCG	1 cut(s)	516
BshFI	GGCC	3 cut(s)	495, 576, 940
BshNI	GGYRCC	1 cut(s)	100
BsiSI	CCGG	5 cut(s)	200, 446, 492, 637, 947
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	3 cut(s)	188, 338, 993
BsmAI	GTCTC	2 cut(s)	229, 881
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	931
BsnI	GGCC	3 cut(s)	495, 576, 940
Bsp143I	GATC	4 cut(s)	261, 499, 832, 955
BspACI	CCGC	3 cut(s)	185, 652, 824
BspANI	GGCC	3 cut(s)	495, 576, 940
BspCNI	CTCAG	4 cut(s)	501, 712, 718, 946
BspFNI	CGCG	1 cut(s)	516
BspHI	TCATGA	1 cut(s)	883
BspLI	GGNNCC	3 cut(s)	102, 939, 972
BspMAI	CTGCAG	1 cut(s)	1023
BspPI	GGATC	2 cut(s)	840, 963
BspT107I	GGYRCC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	344
BsrI	ACTGG	5 cut(s)	218, 297, 307, 377, 768
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	4 cut(s)	261, 499, 832, 955
Bst2UI	CCWGG	3 cut(s)	98, 390, 410
BstC8I	GCNNGC	2 cut(s)	656, 942
BstDEI	CTNAG	4 cut(s)	509, 720, 726, 933
BstF5I	GGATG	5 cut(s)	46, 472, 485, 645, 906
BstFNI	CGCG	1 cut(s)	516
BstH2I	RGCGCY	1 cut(s)	947
BstHHI	GCGC	1 cut(s)	946
BstKTI	GATC	4 cut(s)	264, 502, 835, 958
BstMAI	GTCTC	2 cut(s)	229, 881
BstMBI	GATC	4 cut(s)	261, 499, 832, 955
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	3 cut(s)	98, 390, 410
BstNSI	RCATGY	2 cut(s)	626, 697
BstSCI	CCNGG	4 cut(s)	96, 388, 408, 444
BstSFI	CTRYAG	2 cut(s)	975, 1019
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	3 cut(s)	349, 352, 618
BstV2I	GAAGAC	1 cut(s)	800
BstXI	CCANNNNNNTGG	1 cut(s)	775
Bsu36I	CCTNAGG	1 cut(s)	933
BsuRI	GGCC	3 cut(s)	495, 576, 940
BtsCI	GGATG	5 cut(s)	46, 472, 485, 645, 906
BtsIMutI	CAGTG	2 cut(s)	705, 775
Cac8I	GCNNGC	2 cut(s)	656, 942
CciI	TCATGA	1 cut(s)	883
CfoI	GCGC	1 cut(s)	946
Cfr13I	GGNCC	5 cut(s)	4, 43, 215, 938, 971
Csp6I	GTAC	5 cut(s)	124, 300, 320, 329, 449
CviAII	CATG	5 cut(s)	114, 623, 694, 884, 983
CviQI	GTAC	5 cut(s)	124, 300, 320, 329, 449
DdeI	CTNAG	4 cut(s)	509, 720, 726, 933
DpnI	GATC	4 cut(s)	263, 501, 834, 957
DpnII	GATC	4 cut(s)	261, 499, 832, 955
DraIII	CACNNNGTG	2 cut(s)	257, 419
Eco47I	GGWCC	4 cut(s)	4, 43, 215, 971
Eco57I	CTGAAG	1 cut(s)	138
Eco81I	CCTNAGG	1 cut(s)	933
EcoO109I	RGGNCCY	1 cut(s)	971
EcoRI	GAATTC	1 cut(s)	15
EcoRII	CCWGG	3 cut(s)	96, 388, 408
FaeI	CATG	5 cut(s)	117, 626, 697, 887, 986
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	5 cut(s)	113, 622, 693, 883, 982
FauI	CCCGC	1 cut(s)	659
FauNDI	CATATG	1 cut(s)	612
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	3 cut(s)	363, 366, 607
FokI	GGATG	5 cut(s)	33, 479, 492, 652, 913
Fsp4HI	GCNGC	3 cut(s)	363, 366, 607
FspBI	CTAG	2 cut(s)	555, 798
GlaI	GCGC	1 cut(s)	945
GluI	GCNGC	3 cut(s)	363, 366, 607
GsuI	CTGGAG	1 cut(s)	314
HaeII	RGCGCY	1 cut(s)	947
HaeIII	GGCC	3 cut(s)	495, 576, 940
HapII	CCGG	5 cut(s)	200, 446, 492, 637, 947
HhaI	GCGC	1 cut(s)	946
Hin1II	CATG	5 cut(s)	117, 626, 697, 887, 986
Hin6I	GCGC	1 cut(s)	944
HinP1I	GCGC	1 cut(s)	944
HinfI	GANTC	3 cut(s)	36, 401, 511
HpaII	CCGG	5 cut(s)	200, 446, 492, 637, 947
Hpy166II	GTNNAC	3 cut(s)	179, 308, 919
Hpy188I	TCNGA	3 cut(s)	510, 837, 1000
Hpy188III	TCNNGA	3 cut(s)	12, 33, 884
Hpy8I	GTNNAC	3 cut(s)	179, 308, 919
HpyAV	CCTTC	2 cut(s)	457, 747
HpyCH4IV	ACGT	1 cut(s)	1015
HpyCH4V	TGCA	4 cut(s)	683, 855, 929, 1021
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	4 cut(s)	509, 720, 726, 933
HpySE526I	ACGT	1 cut(s)	1015
Hsp92II	CATG	5 cut(s)	117, 626, 697, 887, 986
HspAI	GCGC	1 cut(s)	944
Kzo9I	GATC	4 cut(s)	261, 499, 832, 955
Lsp1109I	GCAGC	3 cut(s)	349, 352, 618
LweI	GCATC	2 cut(s)	457, 850
MaeI	CTAG	2 cut(s)	555, 798
MaeII	ACGT	1 cut(s)	1015
MaeIII	GTNAC	2 cut(s)	671, 703
MalI	GATC	4 cut(s)	263, 501, 834, 957
MboI	GATC	4 cut(s)	261, 499, 832, 955
MboII	GAAGA	6 cut(s)	50, 445, 605, 643, 805, 818
MluCI	AATT	5 cut(s)	15, 53, 73, 127, 313
MlyI	GAGTC	1 cut(s)	520
MmeI	TCCRAC	1 cut(s)	978
MseI	TTAA	3 cut(s)	204, 627, 1030
MspI	CCGG	5 cut(s)	200, 446, 492, 637, 947
MspR9I	CCNGG	4 cut(s)	98, 390, 410, 446
Mva1269I	GAATGC	1 cut(s)	931
MvaI	CCWGG	3 cut(s)	98, 390, 410
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	1 cut(s)	241
NciI	CCSGG	1 cut(s)	446
NdeI	CATATG	1 cut(s)	612
NdeII	GATC	4 cut(s)	261, 499, 832, 955
NlaIII	CATG	5 cut(s)	117, 626, 697, 887, 986
NlaIV	GGNNCC	3 cut(s)	102, 939, 972
NmuCI	GTSAC	1 cut(s)	703
NspI	RCATGY	2 cut(s)	626, 697
PagI	TCATGA	1 cut(s)	883
PctI	GAATGC	1 cut(s)	931
PfeI	GAWTC	2 cut(s)	36, 401
PflMI	CCANNNNNTGG	1 cut(s)	993
PkrI	GCNGC	3 cut(s)	364, 367, 608
PleI	GAGTC	1 cut(s)	519
PpsI	GAGTC	1 cut(s)	519
PpuMI	RGGWCCY	1 cut(s)	971
Psp5II	RGGWCCY	1 cut(s)	971
Psp6I	CCWGG	3 cut(s)	96, 388, 408
PspGI	CCWGG	3 cut(s)	96, 388, 408
PspN4I	GGNNCC	3 cut(s)	102, 939, 972
PspPI	GGNCC	5 cut(s)	4, 43, 215, 938, 971
PspPPI	RGGWCCY	1 cut(s)	971
PstI	CTGCAG	1 cut(s)	1023
RsaI	GTAC	5 cut(s)	125, 301, 321, 330, 450
RsaNI	GTAC	5 cut(s)	124, 300, 320, 329, 449
SaqAI	TTAA	3 cut(s)	204, 627, 1030
SatI	GCNGC	3 cut(s)	363, 366, 607
Sau3AI	GATC	4 cut(s)	261, 499, 832, 955
Sau96I	GGNCC	5 cut(s)	4, 43, 215, 938, 971
SchI	GAGTC	1 cut(s)	520
ScrFI	CCNGG	4 cut(s)	98, 390, 410, 446
SfaNI	GCATC	2 cut(s)	457, 850
SfcI	CTRYAG	2 cut(s)	975, 1019
SinI	GGWCC	4 cut(s)	4, 43, 215, 971
SpeI	ACTAGT	1 cut(s)	797
Sse9I	AATT	5 cut(s)	15, 53, 73, 127, 313
SsiI	CCGC	3 cut(s)	185, 652, 824
SspMI	CTAG	2 cut(s)	555, 798
StyD4I	CCNGG	4 cut(s)	96, 388, 408, 444
TaiI	ACGT	1 cut(s)	1018
TaqI	TCGA	1 cut(s)	67
TaqII	GACCGA	1 cut(s)	948
TasI	AATT	5 cut(s)	15, 53, 73, 127, 313
TfiI	GAWTC	2 cut(s)	36, 401
Tru1I	TTAA	3 cut(s)	204, 627, 1030
Tru9I	TTAA	3 cut(s)	204, 627, 1030
TscAI	CASTG	2 cut(s)	712, 775
TseFI	GTSAC	1 cut(s)	703
TseI	GCWGC	3 cut(s)	362, 365, 606
Tsp45I	GTSAC	1 cut(s)	703
TspDTI	ATGAA	2 cut(s)	102, 819
TspRI	CASTG	2 cut(s)	712, 775
Van91I	CCANNNNNTGG	1 cut(s)	993
VpaK11BI	GGWCC	4 cut(s)	4, 43, 215, 971
XapI	RAATTY	2 cut(s)	15, 73
XceI	RCATGY	2 cut(s)	626, 697
XmiI	GTMKAC	1 cut(s)	178
XspI	CTAG	2 cut(s)	555, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.