Rmu_sc0000745.1_g000026

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000745.1
OG0002089
Physical Location & Seq
Forward (+)
93043 .. 95764
2722 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1188 bp
atgtatgctgatggcattaactgggatgatcttgggtttggactgattccaatcgattacatgtacaccatgaaatgctctgacggagaaagcttttcacaaggacatctctctccctttggaaagattgagctttgcccatctgctggaatattgaattatggacagggactattcgaaggtcttaaggcgaccagaaaagaagatggtcgtattatgctgtttcggccccaagagaatgctctaagaatgaagatgggtgcagagagaatgtgcatgccatctccatccgttgagcaatttgttgatgctgtgaagcaaacagtcttcgccaacaagcgttgggtaccacctccaggaaaaggatcactgtatattaggcctttgctcgtggggagtggatctaatctgggcttgggcccgggactggagtatacattcctaatatttgcttctccggttggtaattatcacaagggaagggcagccctcaatttgtatgttgagcataaaatccacagagctactcctggtggaactggaggtgtcaagtccgtcaccaattactcacctgtttaccaaacacaacagcaagcaagggccaaggggttctctgatgtcttattcctagattctgctactggtaaaaacattgaggagattgtagcagctaacattttcattctgaagggtaatgtcatttcaacaccaacactgaaacatggaactatcctccctggagtaacccgtaaaagcatcattgacattgcccttgattttggttaccaggtggaggagcgtgtgatcccagtggaggatttacttgcagccgatgaagctttctgcacaggaactgccgtggttgtcaaccctattggcgctgtaacttatcaagacaagagggttgaatacacaacaggaggagcattatgtcagaaactgtatgaaacgctaacaggaatccaaacaggtcgtcttgaggacaagaagggatggaccctagagagccccactgggcttgagatgaaaaagcagcagctttgtgtgacttactacagcaagcattgtggcaacagaaaatacatgcaacctttaatacctcgcttcgatggtcactactcattacgacgattggagtatgttaatggagaatttcttcacgtccaaggagtattggggcctcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

395

Amino Acids

43.55

Weight (kDa)

8.51

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 57 - 293 9.7e-32 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 346
AccB1I GGYRCC 1 cut(s) 346
AccB7I CCANNNNNTGG 1 cut(s) 146
AccI GTMKAC 1 cut(s) 434
AclWI GGATC 3 cut(s) 373, 409, 799
AcsI RAATTY 1 cut(s) 1151
AcuI CTGAAG 1 cut(s) 707
AfaI GTAC 2 cut(s) 65, 348
AfiI CCNNNNNNNGG 6 cut(s) 146, 356, 362, 427, 793, 814
AflII CTTAAG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 3 cut(s) 157, 705, 908
AjiI CACGTC 1 cut(s) 1162
AjnI CCWGG 4 cut(s) 355, 529, 736, 786
AluBI AGCT 6 cut(s) 93, 133, 524, 671, 839, 1039
AluI AGCT 6 cut(s) 93, 133, 524, 671, 839, 1039
AlwI GGATC 3 cut(s) 373, 409, 799
AlwNI CAGNNNCTG 2 cut(s) 854, 940
Ama87I CYCGRG 1 cut(s) 421
AoxI GGCC 5 cut(s) 227, 380, 418, 600, 1178
ApaI GGGCCC 1 cut(s) 422
ApeKI GCWGC 5 cut(s) 485, 668, 827, 1033, 1036
ApoI RAATTY 1 cut(s) 1151
ArsI GACNNNNNNTTYG 2 cut(s) 958, 990
Asp700I GAANNNNTTC 1 cut(s) 1155
Asp718I GGTACC 1 cut(s) 346
AspLEI GCGC 1 cut(s) 881
AspS9I GGNCC 6 cut(s) 228, 418, 419, 600, 996, 1178
AsuC2I CCSGG 2 cut(s) 422, 423
AsuHPI GGTGA 2 cut(s) 550, 561
AsuII TTCGAA 1 cut(s) 177
AvaI CYCGRG 1 cut(s) 421
AvaII GGWCC 1 cut(s) 996
BaeGI GKGCMC 1 cut(s) 422
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 2 cut(s) 422, 1010
BauI CACGAG 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 319
BbvI GCAGC 5 cut(s) 497, 680, 839, 1045, 1048
BccI CCATC 8 cut(s) 5, 148, 200, 250, 289, 295, 987, 1103
BceAI ACGGC 1 cut(s) 842
BciT130I CCWGG 4 cut(s) 357, 531, 738, 788
BcnI CCSGG 2 cut(s) 422, 423
BfaI CTAG 2 cut(s) 629, 1001
BfmI CTRYAG 1 cut(s) 1054
BfoI RGCGCY 1 cut(s) 882
BfrI CTTAAG 1 cut(s) 185
BisI GCNGC 5 cut(s) 486, 669, 828, 1034, 1037
BlsI GCNGC 5 cut(s) 487, 670, 829, 1035, 1038
Bme1390I CCNGG 6 cut(s) 357, 422, 423, 531, 738, 788
Bme18I GGWCC 1 cut(s) 996
BmeT110I CYCGRG 1 cut(s) 421
BmgBI CACGTC 1 cut(s) 1162
BmgT120I GGNCC 6 cut(s) 228, 418, 419, 600, 996, 1178
BmiI GGNNCC 5 cut(s) 230, 348, 420, 998, 1179
BmrFI CCNGG 6 cut(s) 357, 422, 423, 531, 738, 788
BmrI ACTGGG 3 cut(s) 31, 803, 1023
BmsI GCATC 2 cut(s) 298, 765
BmuI ACTGGG 3 cut(s) 31, 803, 1023
BpiI GAAGAC 1 cut(s) 319
BpmI CTGGAG 4 cut(s) 339, 449, 561, 759
Bpu14I TTCGAA 1 cut(s) 177
BpuEI CTTGAG 2 cut(s) 998, 1040
BpuMI CCSGG 2 cut(s) 422, 423
Bsa29I ATCGAT 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 50
BsaJI CCNNGG 5 cut(s) 421, 603, 736, 858, 1165
BsaWI WCCGGW 1 cut(s) 457
Bsc4I CCNNNNNNNGG 6 cut(s) 146, 356, 362, 427, 793, 814
Bse1I ACTGG 6 cut(s) 26, 432, 544, 646, 809, 1018
Bse3DI GCAATG 1 cut(s) 765
Bse8I GATNNNNATC 1 cut(s) 50
BseBI CCWGG 4 cut(s) 357, 531, 738, 788
BseCI ATCGAT 1 cut(s) 54
BseDI CCNNGG 5 cut(s) 421, 603, 736, 858, 1165
BseGI GGATG 3 cut(s) 31, 287, 998
BseJI GATNNNNATC 1 cut(s) 50
BseLI CCNNNNNNNGG 6 cut(s) 146, 356, 362, 427, 793, 814
BseMI GCAATG 1 cut(s) 765
BseNI ACTGG 6 cut(s) 26, 432, 544, 646, 809, 1018
BseRI GAGGAG 3 cut(s) 671, 809, 936
BseSI GKGCMC 1 cut(s) 422
BseXI GCAGC 5 cut(s) 497, 680, 839, 1045, 1048
BsgI GTGCAG 2 cut(s) 282, 829
BshFI GGCC 5 cut(s) 229, 382, 420, 602, 1180
BshNI GGYRCC 1 cut(s) 346
BshVI ATCGAT 1 cut(s) 54
BsiHKCI CYCGRG 1 cut(s) 421
BsiSI CCGG 2 cut(s) 422, 458
BslFI GGGAC 2 cut(s) 183, 438
BslI CCNNNNNNNGG 6 cut(s) 146, 356, 362, 427, 793, 814
BsmFI GGGAC 2 cut(s) 183, 438
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 5 cut(s) 229, 382, 420, 602, 1180
BsoBI CYCGRG 1 cut(s) 421
Bsp119I TTCGAA 1 cut(s) 177
Bsp120I GGGCCC 1 cut(s) 418
Bsp1286I GDGCHC 2 cut(s) 422, 1010
Bsp1407I TGTACA 1 cut(s) 63
Bsp143I GATC 4 cut(s) 28, 365, 401, 804
BspANI GGCC 5 cut(s) 229, 382, 420, 602, 1180
BspDI ATCGAT 1 cut(s) 54
BspLI GGNNCC 5 cut(s) 230, 348, 420, 998, 1179
BspPI GGATC 3 cut(s) 373, 409, 799
BspT104I TTCGAA 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 346
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 765
BsrGI TGTACA 1 cut(s) 63
BsrI ACTGG 6 cut(s) 26, 432, 544, 646, 809, 1018
BssECI CCNNGG 5 cut(s) 421, 603, 736, 858, 1165
BssMI GATC 4 cut(s) 28, 365, 401, 804
BssNAI GTATAC 1 cut(s) 435
BssSI CACGAG 1 cut(s) 389
BssT1I CCWWGG 2 cut(s) 603, 1165
Bst1107I GTATAC 1 cut(s) 435
Bst2BI CACGAG 1 cut(s) 389
Bst2UI CCWGG 4 cut(s) 357, 531, 738, 788
Bst4CI ACNGT 3 cut(s) 325, 372, 942
BstAFI CTTAAG 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 63
BstBI TTCGAA 1 cut(s) 177
BstC8I GCNNGC 3 cut(s) 278, 594, 1061
BstDEI CTNAG 2 cut(s) 245, 1182
BstDSI CCRYGG 1 cut(s) 858
BstEII GGTNACC 1 cut(s) 782
BstF5I GGATG 3 cut(s) 31, 287, 998
BstH2I RGCGCY 1 cut(s) 882
BstHHI GCGC 1 cut(s) 881
BstKTI GATC 4 cut(s) 31, 368, 404, 807
BstMBI GATC 4 cut(s) 28, 365, 401, 804
BstMWI GCNNNNNNNGC 2 cut(s) 226, 836
BstNI CCWGG 4 cut(s) 357, 531, 738, 788
BstNSI RCATGY 3 cut(s) 64, 280, 1087
BstPI GGTNACC 1 cut(s) 782
BstSCI CCNGG 6 cut(s) 355, 420, 421, 529, 736, 786
BstSFI CTRYAG 1 cut(s) 1054
BstSLI GKGCMC 1 cut(s) 422
BstV1I GCAGC 5 cut(s) 497, 680, 839, 1045, 1048
BstV2I GAAGAC 1 cut(s) 319
BstX2I RGATCY 1 cut(s) 401
BstYI RGATCY 1 cut(s) 401
BstZ17I GTATAC 1 cut(s) 435
Bsu15I ATCGAT 1 cut(s) 54
BsuRI GGCC 5 cut(s) 229, 382, 420, 602, 1180
BsuTUI ATCGAT 1 cut(s) 54
BtgI CCRYGG 1 cut(s) 858
BtrI CACGTC 1 cut(s) 1162
BtsCI GGATG 3 cut(s) 31, 287, 998
BtsIMutI CAGTG 4 cut(s) 368, 713, 816, 1011
Cac8I GCNNGC 3 cut(s) 278, 594, 1061
CaiI CAGNNNCTG 2 cut(s) 854, 940
CfoI GCGC 1 cut(s) 881
Cfr13I GGNCC 6 cut(s) 228, 418, 419, 600, 996, 1178
Cfr9I CCCGGG 1 cut(s) 421
ClaI ATCGAT 1 cut(s) 54
CsiI ACCWGGT 1 cut(s) 786
Csp6I GTAC 2 cut(s) 64, 347
CspCI CAANNNNNGTGG 4 cut(s) 1000, 1035, 1048, 1083
CviAII CATG 5 cut(s) 61, 70, 277, 722, 1084
CviQI GTAC 2 cut(s) 64, 347
DdeI CTNAG 2 cut(s) 245, 1182
DpnI GATC 4 cut(s) 30, 367, 403, 806
DpnII GATC 4 cut(s) 28, 365, 401, 804
Eco130I CCWWGG 2 cut(s) 603, 1165
Eco147I AGGCCT 1 cut(s) 382
Eco24I GRGCYC 2 cut(s) 422, 1010
Eco47I GGWCC 1 cut(s) 996
Eco57I CTGAAG 1 cut(s) 707
Eco88I CYCGRG 1 cut(s) 421
Eco91I GGTNACC 1 cut(s) 782
EcoO109I RGGNCCY 1 cut(s) 1178
EcoO65I GGTNACC 1 cut(s) 782
EcoRII CCWGG 4 cut(s) 355, 529, 736, 786
EcoT14I CCWWGG 2 cut(s) 603, 1165
EcoT38I GRGCYC 2 cut(s) 422, 1010
ErhI CCWWGG 2 cut(s) 603, 1165
FaeI CATG 5 cut(s) 64, 73, 280, 725, 1087
FaqI GGGAC 2 cut(s) 183, 438
FatI CATG 5 cut(s) 60, 69, 276, 721, 1083
FblI GTMKAC 1 cut(s) 434
Fnu4HI GCNGC 5 cut(s) 486, 669, 828, 1034, 1037
FokI GGATG 3 cut(s) 38, 274, 1005
FriOI GRGCYC 2 cut(s) 422, 1010
Fsp4HI GCNGC 5 cut(s) 486, 669, 828, 1034, 1037
FspBI CTAG 2 cut(s) 629, 1001
GlaI GCGC 1 cut(s) 880
GluI GCNGC 5 cut(s) 486, 669, 828, 1034, 1037
GsuI CTGGAG 4 cut(s) 339, 449, 561, 759
HaeII RGCGCY 1 cut(s) 882
HaeIII GGCC 5 cut(s) 229, 382, 420, 602, 1180
HapII CCGG 2 cut(s) 422, 458
HhaI GCGC 1 cut(s) 881
Hin1II CATG 5 cut(s) 64, 73, 280, 725, 1087
Hin6I GCGC 1 cut(s) 879
HinP1I GCGC 1 cut(s) 879
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HindIII AAGCTT 2 cut(s) 91, 837
HinfI GANTC 3 cut(s) 46, 632, 960
HpaII CCGG 2 cut(s) 422, 458
HphI GGTGA 2 cut(s) 550, 561
Hpy166II GTNNAC 4 cut(s) 66, 435, 577, 868
Hpy188I TCNGA 4 cut(s) 82, 616, 687, 936
Hpy188III TCNNGA 2 cut(s) 893, 977
Hpy8I GTNNAC 4 cut(s) 66, 435, 577, 868
Hpy99I CGWCG 1 cut(s) 1131
HpyAV CCTTC 4 cut(s) 173, 474, 682, 982
HpyCH4III ACNGT 3 cut(s) 325, 372, 942
HpyCH4IV ACGT 1 cut(s) 1161
HpyCH4V TGCA 5 cut(s) 263, 276, 827, 846, 1087
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 836
HpyF3I CTNAG 2 cut(s) 245, 1182
HpySE526I ACGT 1 cut(s) 1161
Hsp92II CATG 5 cut(s) 64, 73, 280, 725, 1087
HspAI GCGC 1 cut(s) 879
KpnI GGTACC 1 cut(s) 350
Kzo9I GATC 4 cut(s) 28, 365, 401, 804
LmnI GCTCC 2 cut(s) 796, 923
Lsp1109I GCAGC 5 cut(s) 497, 680, 839, 1045, 1048
LweI GCATC 2 cut(s) 298, 765
MabI ACCWGGT 1 cut(s) 786
MaeI CTAG 2 cut(s) 629, 1001
MaeII ACGT 1 cut(s) 1161
MaeIII GTNAC 6 cut(s) 556, 742, 782, 883, 1045, 1112
MalI GATC 4 cut(s) 30, 367, 403, 806
MboI GATC 4 cut(s) 28, 365, 401, 804
MboII GAAGA 4 cut(s) 215, 265, 319, 1148
MflI RGATCY 1 cut(s) 401
MhlI GDGCHC 2 cut(s) 422, 1010
MluCI AATT 6 cut(s) 157, 299, 466, 493, 562, 1151
MroXI GAANNNNTTC 1 cut(s) 1155
MseI TTAA 4 cut(s) 18, 186, 1094, 1143
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 2 cut(s) 422, 458
MspR9I CCNGG 6 cut(s) 357, 422, 423, 531, 738, 788
Mva1269I GAATGC 1 cut(s) 244
MvaI CCWGG 4 cut(s) 357, 531, 738, 788
MwoI GCNNNNNNNGC 2 cut(s) 226, 836
NciI CCSGG 2 cut(s) 422, 423
NdeII GATC 4 cut(s) 28, 365, 401, 804
NlaIII CATG 5 cut(s) 64, 73, 280, 725, 1087
NlaIV GGNNCC 5 cut(s) 230, 348, 420, 998, 1179
NmuCI GTSAC 3 cut(s) 556, 1045, 1112
NspI RCATGY 3 cut(s) 64, 280, 1087
NspV TTCGAA 1 cut(s) 177
PaeI GCATGC 1 cut(s) 280
PceI AGGCCT 1 cut(s) 382
PciI ACATGT 1 cut(s) 60
PctI GAATGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 1155
PfeI GAWTC 3 cut(s) 46, 632, 960
PflMI CCANNNNNTGG 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 355
PkrI GCNGC 5 cut(s) 487, 670, 829, 1035, 1038
PscI ACATGT 1 cut(s) 60
Psp6I CCWGG 4 cut(s) 355, 529, 736, 786
PspEI GGTNACC 1 cut(s) 782
PspGI CCWGG 4 cut(s) 355, 529, 736, 786
PspN4I GGNNCC 5 cut(s) 230, 348, 420, 998, 1179
PspOMI GGGCCC 1 cut(s) 418
PspPI GGNCC 6 cut(s) 228, 418, 419, 600, 996, 1178
PstNI CAGNNNCTG 2 cut(s) 854, 940
PsuI RGATCY 1 cut(s) 401
RsaI GTAC 2 cut(s) 65, 348
RsaNI GTAC 2 cut(s) 64, 347
SaqAI TTAA 4 cut(s) 18, 186, 1094, 1143
SatI GCNGC 5 cut(s) 486, 669, 828, 1034, 1037
Sau3AI GATC 4 cut(s) 28, 365, 401, 804
Sau96I GGNCC 6 cut(s) 228, 418, 419, 600, 996, 1178
ScrFI CCNGG 6 cut(s) 357, 422, 423, 531, 738, 788
SduI GDGCHC 2 cut(s) 422, 1010
SexAI ACCWGGT 1 cut(s) 786
SfaNI GCATC 2 cut(s) 298, 765
SfcI CTRYAG 1 cut(s) 1054
SfuI TTCGAA 1 cut(s) 177
SinI GGWCC 1 cut(s) 996
SmaI CCCGGG 1 cut(s) 423
SmlI CTYRAG 3 cut(s) 185, 977, 1019
SmoI CTYRAG 3 cut(s) 185, 977, 1019
SphI GCATGC 1 cut(s) 280
Sse9I AATT 6 cut(s) 157, 299, 466, 493, 562, 1151
SseBI AGGCCT 1 cut(s) 382
SspI AATATT 2 cut(s) 153, 447
SspMI CTAG 2 cut(s) 629, 1001
StuI AGGCCT 1 cut(s) 382
StyD4I CCNGG 6 cut(s) 355, 420, 421, 529, 736, 786
StyI CCWWGG 2 cut(s) 603, 1165
TaaI ACNGT 3 cut(s) 325, 372, 942
TaiI ACGT 1 cut(s) 1164
TaqI TCGA 3 cut(s) 54, 177, 1107
TasI AATT 6 cut(s) 157, 299, 466, 493, 562, 1151
TatI WGTACW 1 cut(s) 63
TfiI GAWTC 3 cut(s) 46, 632, 960
Tru1I TTAA 4 cut(s) 18, 186, 1094, 1143
Tru9I TTAA 4 cut(s) 18, 186, 1094, 1143
TscAI CASTG 4 cut(s) 375, 720, 816, 1018
TseFI GTSAC 3 cut(s) 556, 1045, 1112
TseI GCWGC 5 cut(s) 485, 668, 827, 1033, 1036
Tsp45I GTSAC 3 cut(s) 556, 1045, 1112
TspDTI ATGAA 6 cut(s) 86, 266, 670, 849, 960, 1040
TspGWI ACGGA 3 cut(s) 99, 280, 544
TspMI CCCGGG 1 cut(s) 421
TspRI CASTG 4 cut(s) 375, 720, 816, 1018
Van91I CCANNNNNTGG 1 cut(s) 146
Vha464I CTTAAG 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 996
XapI RAATTY 1 cut(s) 1151
XceI RCATGY 3 cut(s) 64, 280, 1087
XmaI CCCGGG 1 cut(s) 421
XmiI GTMKAC 1 cut(s) 434
XmnI GAANNNNTTC 1 cut(s) 1155
XspI CTAG 2 cut(s) 629, 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.