Rmu_sc0000920.1_g000002

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000920.1
OG0003704
Physical Location & Seq
Reverse (-)
4397 .. 6541
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 639 bp
atgggaaatcacctacaagctcagaagtcgtcaaactcgaggataatcaacaagcaccaagaacacatgacgattcatccaccatcaaagtcgtactcgccacgtgacaccaatcggcccaaatctgatcaagatcaagaatttgcaacccttgatcaaccctcttcaattctgacccaagacgagttgaagaaaatcgccgcctacaaggtcgtcgagtccggtgtgatctttggcctcggctccggctccaccgtcaaacatgtcgtggatcgcttgggcgagtttttacaatcgggaaaagttcacaacatcatcggaatttccgagaacacccaccaacaagtcatctctcttagaattctattatccaaccttgatgactacccgatcctcaatctcgctatcgatggtgccggcgaggtggactcccacctcaacctaatcaaaggcagctgcggccttgataataaggggaaggttttggaattgaaggaagagttggactctgaatttgttagtgtcctccagtccttggggttggatgtggagataagatcaaaagaatcaattgagcaaaactttgccctcagaagtcaaggccagatttttttctgttgggccggttcaagaacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

212

Amino Acids

23.45

Weight (kDa)

5.89

Isoelectric Point (pI)

50.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 106 - 160 8.5e-09 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 413
AccB7I CCANNNNNTGG 1 cut(s) 535
AciI CCGC 2 cut(s) 201, 459
AclWI GGATC 2 cut(s) 279, 385
AcsI RAATTY 4 cut(s) 140, 321, 360, 512
AcvI CACGTG 1 cut(s) 104
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 535
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 4 cut(s) 168, 190, 493, 630
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
AluBI AGCT 2 cut(s) 20, 456
AluI AGCT 2 cut(s) 20, 456
AlwI GGATC 2 cut(s) 279, 385
Ama87I CYCGRG 1 cut(s) 37
AoxI GGCC 5 cut(s) 116, 235, 460, 601, 621
ApeKI GCWGC 2 cut(s) 453, 456
ApoI RAATTY 4 cut(s) 140, 321, 360, 512
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
AspS9I GGNCC 2 cut(s) 117, 621
AvaI CYCGRG 1 cut(s) 37
BanI GGYRCC 1 cut(s) 413
BbrPI CACGTG 1 cut(s) 104
BbvI GCAGC 2 cut(s) 443, 465
BccI CCATC 2 cut(s) 91, 404
BclI TGATCA 2 cut(s) 127, 154
BisI GCNGC 4 cut(s) 201, 454, 457, 460
BlsI GCNGC 4 cut(s) 202, 455, 458, 461
BmeT110I CYCGRG 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 117, 621
BmiI GGNNCC 3 cut(s) 244, 250, 415
BplI GAGNNNNNCTC 4 cut(s) 413, 445, 491, 523
BpmI CTGGAG 1 cut(s) 512
Bsa29I ATCGAT 1 cut(s) 408
BsaAI YACGTR 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 238, 534
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 535
Bse118I RCCGGY 2 cut(s) 416, 623
Bse1I ACTGG 1 cut(s) 529
Bse8I GATNNNNATC 1 cut(s) 132
BseCI ATCGAT 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 238, 534
BseGI GGATG 2 cut(s) 76, 550
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 535
BseMII CTCAG 2 cut(s) 35, 604
BseNI ACTGG 1 cut(s) 529
BseXI GCAGC 2 cut(s) 443, 465
BshFI GGCC 5 cut(s) 118, 237, 462, 603, 623
BshNI GGYRCC 1 cut(s) 413
BshVI ATCGAT 1 cut(s) 408
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 4 cut(s) 222, 246, 417, 624
BslI CCNNNNNNNGG 1 cut(s) 535
BsnI GGCC 5 cut(s) 118, 237, 462, 603, 623
BsoBI CYCGRG 1 cut(s) 37
Bsp143I GATC 7 cut(s) 127, 133, 154, 228, 271, 390, 557
BspACI CCGC 2 cut(s) 201, 459
BspANI GGCC 5 cut(s) 118, 237, 462, 603, 623
BspCNI CTCAG 2 cut(s) 34, 603
BspDI ATCGAT 1 cut(s) 408
BspLI GGNNCC 3 cut(s) 244, 250, 415
BspPI GGATC 2 cut(s) 279, 385
BspT107I GGYRCC 1 cut(s) 413
BsrFI RCCGGY 2 cut(s) 416, 623
BsrI ACTGG 1 cut(s) 529
BssAI RCCGGY 2 cut(s) 416, 623
BssECI CCNNGG 2 cut(s) 238, 534
BssMI GATC 7 cut(s) 127, 133, 154, 228, 271, 390, 557
BssT1I CCWWGG 1 cut(s) 534
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 2 cut(s) 169, 492
BstBAI YACGTR 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 3 cut(s) 21, 356, 590
BstF5I GGATG 2 cut(s) 76, 550
BstKTI GATC 7 cut(s) 130, 136, 157, 231, 274, 393, 560
BstMBI GATC 7 cut(s) 127, 133, 154, 228, 271, 390, 557
BstMWI GCNNNNNNNGC 1 cut(s) 459
BstNSI RCATGY 1 cut(s) 266
BstV1I GCAGC 2 cut(s) 443, 465
Bsu15I ATCGAT 1 cut(s) 408
BsuRI GGCC 5 cut(s) 118, 237, 462, 603, 623
BsuTUI ATCGAT 1 cut(s) 408
BtsCI GGATG 2 cut(s) 76, 550
Cac8I GCNNGC 1 cut(s) 418
Cfr10I RCCGGY 2 cut(s) 416, 623
Cfr13I GGNCC 2 cut(s) 117, 621
ClaI ATCGAT 1 cut(s) 408
Csp6I GTAC 1 cut(s) 94
CviAII CATG 3 cut(s) 67, 263, 636
CviJI RGCY 9 cut(s) 20, 118, 237, 243, 249, 456, 462, 603, 623
CviKI_1 RGCY 9 cut(s) 20, 118, 237, 243, 249, 456, 462, 603, 623
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 3 cut(s) 21, 356, 590
DpnI GATC 7 cut(s) 129, 135, 156, 230, 273, 392, 559
DpnII GATC 7 cut(s) 127, 133, 154, 228, 271, 390, 557
Eam1104I CTCTTC 2 cut(s) 169, 492
EarI CTCTTC 2 cut(s) 169, 492
Eco130I CCWWGG 1 cut(s) 534
Eco72I CACGTG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 37
EcoRI GAATTC 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 3 cut(s) 70, 266, 639
FaiI YATR 3 cut(s) 68, 264, 637
FatI CATG 3 cut(s) 66, 262, 635
FbaI TGATCA 2 cut(s) 127, 154
Fnu4HI GCNGC 4 cut(s) 201, 454, 457, 460
FokI GGATG 2 cut(s) 63, 557
Fsp4HI GCNGC 4 cut(s) 201, 454, 457, 460
GluI GCNGC 4 cut(s) 201, 454, 457, 460
GsuI CTGGAG 1 cut(s) 512
HaeIII GGCC 5 cut(s) 118, 237, 462, 603, 623
HapII CCGG 4 cut(s) 222, 246, 417, 624
Hin1II CATG 3 cut(s) 70, 266, 639
HinfI GANTC 5 cut(s) 73, 218, 428, 506, 566
HpaII CCGG 4 cut(s) 222, 246, 417, 624
Hpy166II GTNNAC 2 cut(s) 307, 427
Hpy188I TCNGA 7 cut(s) 24, 127, 174, 320, 328, 511, 593
Hpy188III TCNNGA 4 cut(s) 131, 137, 297, 630
Hpy8I GTNNAC 2 cut(s) 307, 427
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 472, 487
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 459
HpyF3I CTNAG 3 cut(s) 21, 356, 590
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 3 cut(s) 70, 266, 639
KroI GCCGGC 1 cut(s) 416
KroNI GCCGGC 1 cut(s) 418
Ksp22I TGATCA 2 cut(s) 127, 154
Kzo9I GATC 7 cut(s) 127, 133, 154, 228, 271, 390, 557
LmnI GCTCC 2 cut(s) 248, 254
LpnPI CCDG 5 cut(s) 235, 259, 430, 542, 617
Lsp1109I GCAGC 2 cut(s) 443, 465
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 104
MalI GATC 7 cut(s) 129, 135, 156, 230, 273, 392, 559
MboI GATC 7 cut(s) 127, 133, 154, 228, 271, 390, 557
MboII GAAGA 3 cut(s) 156, 202, 509
MfeI CAATTG 1 cut(s) 570
MluCI AATT 7 cut(s) 140, 168, 321, 360, 488, 512, 570
MlyI GAGTC 3 cut(s) 227, 422, 500
MmeI TCCRAC 3 cut(s) 396, 483, 522
MnlI CCTC 8 cut(s) 33, 172, 248, 404, 415, 446, 536, 599
MroNI GCCGGC 1 cut(s) 416
MspA1I CMGCKG 1 cut(s) 456
MspI CCGG 4 cut(s) 222, 246, 417, 624
MunI CAATTG 1 cut(s) 570
MwoI GCNNNNNNNGC 1 cut(s) 459
NaeI GCCGGC 1 cut(s) 418
NdeII GATC 7 cut(s) 127, 133, 154, 228, 271, 390, 557
NgoMIV GCCGGC 1 cut(s) 416
NlaIII CATG 3 cut(s) 70, 266, 639
NlaIV GGNNCC 3 cut(s) 244, 250, 415
NmeAIII GCCGAG 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 104
NspI RCATGY 1 cut(s) 266
PaeR7I CTCGAG 1 cut(s) 37
PciI ACATGT 1 cut(s) 262
PcsI WCGNNNNNNNCGW 2 cut(s) 35, 324
PdiI GCCGGC 1 cut(s) 418
PfeI GAWTC 2 cut(s) 73, 566
PflMI CCANNNNNTGG 1 cut(s) 535
PkrI GCNGC 4 cut(s) 202, 455, 458, 461
PleI GAGTC 3 cut(s) 226, 422, 500
PmaCI CACGTG 1 cut(s) 104
PmlI CACGTG 1 cut(s) 104
PpsI GAGTC 3 cut(s) 226, 422, 500
Ppu21I YACGTR 1 cut(s) 104
PscI ACATGT 1 cut(s) 262
PspCI CACGTG 1 cut(s) 104
PspN4I GGNNCC 3 cut(s) 244, 250, 415
PspPI GGNCC 2 cut(s) 117, 621
PspXI VCTCGAGB 1 cut(s) 37
PvuII CAGCTG 1 cut(s) 456
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SatI GCNGC 4 cut(s) 201, 454, 457, 460
Sau3AI GATC 7 cut(s) 127, 133, 154, 228, 271, 390, 557
Sau96I GGNCC 2 cut(s) 117, 621
SchI GAGTC 3 cut(s) 227, 422, 500
Sfr274I CTCGAG 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 7 cut(s) 140, 168, 321, 360, 488, 512, 570
SsiI CCGC 2 cut(s) 201, 459
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 1 cut(s) 106
TaqI TCGA 3 cut(s) 38, 216, 408
TasI AATT 7 cut(s) 140, 168, 321, 360, 488, 512, 570
TauI GCSGC 2 cut(s) 203, 462
TfiI GAWTC 2 cut(s) 73, 566
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 2 cut(s) 453, 456
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 65
Van91I CCANNNNNTGG 1 cut(s) 535
XapI RAATTY 4 cut(s) 140, 321, 360, 512
XceI RCATGY 1 cut(s) 266
XhoI CTCGAG 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.