Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000929.1

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Forward (+)

42701 .. 43201

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgtacaaaactgagttcacttcaaggcaatgtaaaagctgtggccttcggttcaagtgtgaagaacagcacagcagccatatgaattggcatgtcaagaagaaccgtatgtccaaaacccgcaagcaaaagccctctcgtaacttttatgcaactacaagcatgtggcttgttactgatgtagaggctgaggctgagacattaccttctggtgtagttatgtgcgctgctgacaccagaggcgtggcggaacagaataggaagactagtgatgaagaaatggttgttcctgcggacgaggatcagagtaaatgcgccttatgcacatacgcttttattgagttttataatcatgagaaagatgagtggatgtataaaggtgctgtttacttgaatgtgcctcaggggccagcgccggagatggatcgatcacagctgggtcctatagtccatgccaaatgctggtccgagggcagtcagaaacgtctgcggaggagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

166

Amino Acids

19.17

Weight (kDa)

8.44

Isoelectric Point (pI)

70.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_PCFS4	PF23228	91 - 157	1.2e-27	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
AccB7I	CCANNNNNTGG	1 cut(s)	462
AciI	CCGC	4 cut(s)	121, 248, 293, 490
AclWI	GGATC	2 cut(s)	309, 432
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	462
AgsI	TTSAA	3 cut(s)	24, 55, 394
AhlI	ACTAGT	1 cut(s)	266
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	2 cut(s)	39, 436
AluI	AGCT	2 cut(s)	39, 436
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	2 cut(s)	309, 432
AoxI	GGCC	2 cut(s)	43, 407
ApeKI	GCWGC	2 cut(s)	75, 227
AspLEI	GCGC	3 cut(s)	227, 317, 415
AspS9I	GGNCC	3 cut(s)	407, 440, 465
AvaII	GGWCC	2 cut(s)	440, 465
AxyI	CCTNAGG	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	269
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	87, 214
BccI	CCATC	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	191
BcuI	ACTAGT	1 cut(s)	266
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	444
BfoI	RGCGCY	1 cut(s)	416
BglI	GCCNNNNNGGC	1 cut(s)	406
BisI	GCNGC	2 cut(s)	76, 228
BlsI	GCNGC	2 cut(s)	77, 229
Bme18I	GGWCC	2 cut(s)	440, 465
BmgT120I	GGNCC	3 cut(s)	407, 440, 465
BmiI	GGNNCC	2 cut(s)	408, 441
BpiI	GAAGAC	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	189
Bsa29I	ATCGAT	1 cut(s)	427
BsaJI	CCNNGG	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse21I	CCTNAGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	35
BseCI	ATCGAT	1 cut(s)	427
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMI	GCAATG	1 cut(s)	35
BseMII	CTCAG	3 cut(s)	180, 186, 416
BseXI	GCAGC	2 cut(s)	87, 214
BseYI	CCCAGC	1 cut(s)	436
BshFI	GGCC	2 cut(s)	45, 409
BshVI	ATCGAT	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	45, 409
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	301, 424, 428
BspACI	CCGC	4 cut(s)	121, 248, 293, 490
BspANI	GGCC	2 cut(s)	45, 409
BspCNI	CTCAG	4 cut(s)	4, 181, 187, 415
BspDI	ATCGAT	1 cut(s)	427
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	408, 441
BspPI	GGATC	2 cut(s)	309, 432
BsrDI	GCAATG	1 cut(s)	35
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	3 cut(s)	301, 424, 428
Bst4CI	ACNGT	1 cut(s)	107
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	125, 411
BstDEI	CTNAG	4 cut(s)	12, 189, 195, 402
BstF5I	GGATG	1 cut(s)	375
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	3 cut(s)	227, 317, 415
BstKTI	GATC	3 cut(s)	304, 427, 431
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	3 cut(s)	301, 424, 428
BstMWI	GCNNNNNNNGC	2 cut(s)	321, 406
BstNSI	RCATGY	2 cut(s)	95, 166
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	2 cut(s)	87, 214
BstV2I	GAAGAC	1 cut(s)	269
BstXI	CCANNNNNNTGG	1 cut(s)	244
Bsu15I	ATCGAT	1 cut(s)	427
Bsu36I	CCTNAGG	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	45, 409
BsuTUI	ATCGAT	1 cut(s)	427
BtsCI	GGATG	1 cut(s)	375
Cac8I	GCNNGC	2 cut(s)	125, 411
CciI	TCATGA	1 cut(s)	352
CfoI	GCGC	3 cut(s)	227, 317, 415
Cfr13I	GGNCC	3 cut(s)	407, 440, 465
ClaI	ATCGAT	1 cut(s)	427
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	4 cut(s)	92, 163, 353, 452
CviJI	RGCY	9 cut(s)	39, 45, 78, 133, 169, 188, 194, 409, 436
CviKI_1	RGCY	9 cut(s)	39, 45, 78, 133, 169, 188, 194, 409, 436
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	4 cut(s)	12, 189, 195, 402
DpnI	GATC	3 cut(s)	303, 426, 430
DpnII	GATC	3 cut(s)	301, 424, 428
EciI	GGCGGA	1 cut(s)	263
Eco47I	GGWCC	2 cut(s)	440, 465
Eco81I	CCTNAGG	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	440
FaeI	CATG	4 cut(s)	95, 166, 356, 455
FatI	CATG	4 cut(s)	91, 162, 352, 451
FauI	CCCGC	1 cut(s)	128
FauNDI	CATATG	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	76, 228
FokI	GGATG	1 cut(s)	382
Fsp4HI	GCNGC	2 cut(s)	76, 228
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	3 cut(s)	226, 316, 414
GluI	GCNGC	2 cut(s)	76, 228
GsaI	CCCAGC	1 cut(s)	440
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	2 cut(s)	45, 409
HapII	CCGG	1 cut(s)	416
HhaI	GCGC	3 cut(s)	227, 317, 415
Hin1II	CATG	4 cut(s)	95, 166, 356, 455
Hin6I	GCGC	3 cut(s)	225, 315, 413
HinP1I	GCGC	3 cut(s)	225, 315, 413
HpaII	CCGG	1 cut(s)	416
Hpy166II	GTNNAC	2 cut(s)	18, 388
Hpy188I	TCNGA	3 cut(s)	306, 469, 480
Hpy188III	TCNNGA	2 cut(s)	97, 353
Hpy8I	GTNNAC	2 cut(s)	18, 388
HpyAV	CCTTC	2 cut(s)	56, 216
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	2 cut(s)	152, 324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	321, 406
HpyF3I	CTNAG	4 cut(s)	12, 189, 195, 402
HpySE526I	ACGT	1 cut(s)	484
Hsp92II	CATG	4 cut(s)	95, 166, 356, 455
HspAI	GCGC	3 cut(s)	225, 315, 413
Kzo9I	GATC	3 cut(s)	301, 424, 428
LpnPI	CCDG	8 cut(s)	195, 250, 303, 389, 422, 423, 429, 448
Lsp1109I	GCAGC	2 cut(s)	87, 214
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	484
MaeIII	GTNAC	2 cut(s)	140, 172
MalI	GATC	3 cut(s)	303, 426, 430
MboI	GATC	3 cut(s)	301, 424, 428
MboII	GAAGA	4 cut(s)	74, 112, 274, 287
MluCI	AATT	1 cut(s)	85
MnlI	CCTC	8 cut(s)	145, 178, 184, 233, 292, 411, 463, 486
MseI	TTAA	1 cut(s)	499
MspA1I	CMGCKG	1 cut(s)	436
MspI	CCGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	321, 406
NdeI	CATATG	1 cut(s)	81
NdeII	GATC	3 cut(s)	301, 424, 428
NlaIII	CATG	4 cut(s)	95, 166, 356, 455
NlaIV	GGNNCC	2 cut(s)	408, 441
NspI	RCATGY	2 cut(s)	95, 166
PagI	TCATGA	1 cut(s)	352
PflMI	CCANNNNNTGG	1 cut(s)	462
PkrI	GCNGC	2 cut(s)	77, 229
PpuMI	RGGWCCY	1 cut(s)	440
PsiI	TTATAA	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	440
PspFI	CCCAGC	1 cut(s)	436
PspN4I	GGNNCC	2 cut(s)	408, 441
PspPI	GGNCC	3 cut(s)	407, 440, 465
PspPPI	RGGWCCY	1 cut(s)	440
PvuII	CAGCTG	1 cut(s)	436
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	499
SatI	GCNGC	2 cut(s)	76, 228
Sau3AI	GATC	3 cut(s)	301, 424, 428
Sau96I	GGNCC	3 cut(s)	407, 440, 465
SetI	ASST	5 cut(s)	41, 208, 382, 438, 487
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	2 cut(s)	440, 465
SpeI	ACTAGT	1 cut(s)	266
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	4 cut(s)	121, 248, 293, 490
SspMI	CTAG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	1 cut(s)	427
TasI	AATT	1 cut(s)	85
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	1 cut(s)	499
Tru9I	TTAA	1 cut(s)	499
TseI	GCWGC	2 cut(s)	75, 227
TspDTI	ATGAA	2 cut(s)	98, 288
Van91I	CCANNNNNTGG	1 cut(s)	462
VpaK11BI	GGWCC	2 cut(s)	440, 465
XceI	RCATGY	2 cut(s)	95, 166
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.