Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001167.1

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Reverse (-)

93916 .. 101107

Gene Structure 7192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atgcgacgcatccaatttctggcattggcatgcgcagaactggtgcaacgtagcagcttccaggcggcgcgcaacttgcagaagggaggccagaggcatcccggaccgttctgggcaacgatcgaggtcgaaggagatcaaggttgcacattctgggaagcggccagacctgcaactgcaaggttctgggcaatgccgcaacctcatcgccggcgactccacctaactgcatacctgcttctcagacccctagcccccatctggcaagccccgacgcgccatcgaagcttgaacgaggccgaagaagcgacatgcttcctgagaacattaacaaagaggcctgagacgcaaagcagcaccaccgggtctaaaggcgagttgggccggatcctctgcctcctctacgccacctaccaccccagaaatcaatacctcctccacctcgaccgctttgcttcccagactgaccgtgaccagttagccctcaaggtccgatctgttcccattttcagagccgcccagaatgtccatctcatcggtaaagctgacttagtctaccaaaaagggtcgtcttcgatctcgttcactctccacggcgcgtcgattctgctctggttctcaaccaattgggactggttcataagcttcactgttgatgactacccacttctcaaacaagacgatcttcttcacattatgtcattcctgcccaaagatctgaactttgtgaatcattcgagttacattggctggaaagagtcgaagagattgaaacaggtcattgttgatctggagctttatctttctgagaaaaatgtgatgttctatgcggtacagaaaagggtgttgcctaatgcttaccgtgagaaaactggcaactcaagtggagaagctatcccatctggtctgccaggaggtacctggaactctactttctctgaaactctctggccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

318

Amino Acids

36.42

Weight (kDa)

9.59

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	121 - 275	4.5e-28	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	34
Acc36I	ACCTGC	2 cut(s)	178, 243
Acc65I	GGTACC	1 cut(s)	917
AccB1I	GGYRCC	1 cut(s)	917
AccB7I	CCANNNNNTGG	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	555
AccII	CGCG	3 cut(s)	70, 277, 599
AciI	CCGC	6 cut(s)	65, 161, 197, 448, 516, 830
AclWI	GGATC	2 cut(s)	382, 395
AcoI	YGGCCR	1 cut(s)	162
AfaI	GTAC	2 cut(s)	834, 919
AfiI	CCNNNNNNNGG	2 cut(s)	19, 261
AgsI	TTSAA	2 cut(s)	292, 772
AjnI	CCWGG	3 cut(s)	60, 910, 920
AluBI	AGCT	6 cut(s)	57, 288, 545, 645, 796, 893
AluI	AGCT	6 cut(s)	57, 288, 545, 645, 796, 893
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	2 cut(s)	382, 395
AoxI	GGCC	6 cut(s)	88, 162, 297, 338, 382, 950
ApeKI	GCWGC	2 cut(s)	54, 354
Asp718I	GGTACC	1 cut(s)	917
AspLEI	GCGC	5 cut(s)	35, 70, 72, 279, 599
AspS9I	GGNCC	3 cut(s)	104, 382, 490
AsuC2I	CCSGG	2 cut(s)	102, 364
AvaII	GGWCC	2 cut(s)	104, 490
BamHI	GGATCC	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	917
BbsI	GAAGAC	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	66, 366
BccI	CCATC	4 cut(s)	266, 288, 537, 907
BceAI	ACGGC	1 cut(s)	610
BcgI	CGANNNNNNTGC	4 cut(s)	188, 222, 434, 468
BciT130I	CCWGG	3 cut(s)	62, 912, 922
BcnI	CCSGG	2 cut(s)	102, 364
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	1 cut(s)	251
BfuAI	ACCTGC	2 cut(s)	178, 243
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	6 cut(s)	55, 66, 162, 197, 355, 516
BlsI	GCNGC	6 cut(s)	56, 67, 163, 198, 356, 517
Bme1390I	CCNGG	5 cut(s)	62, 102, 364, 912, 922
Bme18I	GGWCC	2 cut(s)	104, 490
BmgT120I	GGNCC	3 cut(s)	104, 382, 490
BmiI	GGNNCC	2 cut(s)	389, 919
BmrFI	CCNGG	5 cut(s)	62, 102, 364, 912, 922
BmsI	GCATC	2 cut(s)	18, 106
BpiI	GAAGAC	1 cut(s)	564
BpmI	CTGGAG	1 cut(s)	812
BpuEI	CTTGAG	2 cut(s)	470, 865
BpuMI	CCSGG	2 cut(s)	102, 364
BsaJI	CCNNGG	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 261
Bse118I	RCCGGY	1 cut(s)	210
Bse1I	ACTGG	4 cut(s)	45, 475, 638, 877
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	3 cut(s)	62, 912, 922
BseDI	CCNNGG	1 cut(s)	592
BseGI	GGATG	2 cut(s)	9, 97
BseLI	CCNNNNNNNGG	2 cut(s)	19, 261
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	4 cut(s)	256, 311, 333, 798
BseNI	ACTGG	4 cut(s)	45, 475, 638, 877
BsePI	GCGCGC	1 cut(s)	68
BseRI	GAGGAG	2 cut(s)	389, 425
BseXI	GCAGC	2 cut(s)	66, 366
Bsh1236I	CGCG	3 cut(s)	70, 277, 599
Bsh1285I	CGRYCG	2 cut(s)	123, 448
BshFI	GGCC	6 cut(s)	90, 164, 299, 340, 384, 952
BshNI	GGYRCC	1 cut(s)	917
BsiEI	CGRYCG	2 cut(s)	123, 448
BsiSI	CCGG	4 cut(s)	102, 211, 363, 385
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	2 cut(s)	19, 261
BsmAI	GTCTC	1 cut(s)	338
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	644
BsnI	GGCC	6 cut(s)	90, 164, 299, 340, 384, 952
Bsp143I	GATC	8 cut(s)	120, 136, 387, 494, 576, 682, 715, 787
BspACI	CCGC	6 cut(s)	65, 161, 197, 448, 516, 830
BspANI	GGCC	6 cut(s)	90, 164, 299, 340, 384, 952
BspCNI	CTCAG	4 cut(s)	255, 312, 334, 799
BspFNI	CGCG	3 cut(s)	70, 277, 599
BspLI	GGNNCC	2 cut(s)	389, 919
BspMI	ACCTGC	2 cut(s)	178, 243
BspPI	GGATC	2 cut(s)	382, 395
BspT107I	GGYRCC	1 cut(s)	917
BsrDI	GCAATG	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	210
BsrI	ACTGG	4 cut(s)	45, 475, 638, 877
BssAI	RCCGGY	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	592
BssHII	GCGCGC	1 cut(s)	68
BssMI	GATC	8 cut(s)	120, 136, 387, 494, 576, 682, 715, 787
Bst2UI	CCWGG	3 cut(s)	62, 912, 922
Bst4CI	ACNGT	4 cut(s)	108, 470, 652, 863
Bst6I	CTCTTC	1 cut(s)	758
BstC8I	GCNNGC	4 cut(s)	31, 70, 212, 267
BstDEI	CTNAG	5 cut(s)	242, 320, 342, 550, 807
BstDSI	CCRYGG	1 cut(s)	592
BstF5I	GGATG	2 cut(s)	9, 97
BstFNI	CGCG	3 cut(s)	70, 277, 599
BstHHI	GCGC	5 cut(s)	35, 70, 72, 279, 599
BstKTI	GATC	8 cut(s)	123, 139, 390, 497, 579, 685, 718, 790
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	8 cut(s)	120, 136, 387, 494, 576, 682, 715, 787
BstMCI	CGRYCG	2 cut(s)	123, 448
BstMWI	GCNNNNNNNGC	6 cut(s)	76, 170, 285, 305, 346, 381
BstNI	CCWGG	3 cut(s)	62, 912, 922
BstNSI	RCATGY	2 cut(s)	33, 315
BstSCI	CCNGG	5 cut(s)	60, 100, 362, 910, 920
BstUI	CGCG	3 cut(s)	70, 277, 599
BstV1I	GCAGC	2 cut(s)	66, 366
BstV2I	GAAGAC	1 cut(s)	564
BstX2I	RGATCY	2 cut(s)	387, 715
BstYI	RGATCY	2 cut(s)	387, 715
BsuRI	GGCC	6 cut(s)	90, 164, 299, 340, 384, 952
BtgI	CCRYGG	1 cut(s)	592
BtgZI	GCGATG	1 cut(s)	191
BtsCI	GGATG	2 cut(s)	9, 97
BtsIMutI	CAGTG	1 cut(s)	648
BveI	ACCTGC	2 cut(s)	178, 243
Cac8I	GCNNGC	4 cut(s)	31, 70, 212, 267
CfoI	GCGC	5 cut(s)	35, 70, 72, 279, 599
Cfr10I	RCCGGY	1 cut(s)	210
Cfr13I	GGNCC	3 cut(s)	104, 382, 490
CpoI	CGGWCCG	1 cut(s)	104
CseI	GACGC	4 cut(s)	15, 283, 355, 588
Csp6I	GTAC	2 cut(s)	833, 918
CspCI	CAANNNNNGTGG	2 cut(s)	865, 900
CspI	CGGWCCG	1 cut(s)	104
CviAII	CATG	2 cut(s)	30, 312
CviQI	GTAC	2 cut(s)	833, 918
DdeI	CTNAG	5 cut(s)	242, 320, 342, 550, 807
DpnI	GATC	8 cut(s)	122, 138, 389, 496, 578, 684, 717, 789
DpnII	GATC	8 cut(s)	120, 136, 387, 494, 576, 682, 715, 787
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	758
EarI	CTCTTC	1 cut(s)	758
Eco147I	AGGCCT	1 cut(s)	340
Eco47I	GGWCC	2 cut(s)	104, 490
EcoRII	CCWGG	3 cut(s)	60, 910, 920
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	2 cut(s)	33, 315
FaiI	YATR	6 cut(s)	31, 232, 313, 641, 698, 828
FalI	AAGNNNNNCTT	2 cut(s)	669, 701
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	2 cut(s)	29, 311
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	6 cut(s)	55, 66, 162, 197, 355, 516
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	6 cut(s)	55, 66, 162, 197, 355, 516
FspBI	CTAG	1 cut(s)	251
FspI	TGCGCA	1 cut(s)	34
GlaI	GCGC	5 cut(s)	34, 69, 71, 278, 598
GluI	GCNGC	6 cut(s)	55, 66, 162, 197, 355, 516
GsuI	CTGGAG	1 cut(s)	812
HaeIII	GGCC	6 cut(s)	90, 164, 299, 340, 384, 952
HapII	CCGG	4 cut(s)	102, 211, 363, 385
HgaI	GACGC	4 cut(s)	15, 283, 355, 588
HhaI	GCGC	5 cut(s)	35, 70, 72, 279, 599
Hin1II	CATG	2 cut(s)	33, 315
Hin6I	GCGC	5 cut(s)	33, 68, 70, 277, 597
HinP1I	GCGC	5 cut(s)	33, 68, 70, 277, 597
HindIII	AAGCTT	2 cut(s)	286, 643
HinfI	GANTC	4 cut(s)	216, 604, 730, 758
HpaII	CCGG	4 cut(s)	102, 211, 363, 385
Hpy166II	GTNNAC	2 cut(s)	556, 585
Hpy188I	TCNGA	6 cut(s)	245, 494, 512, 720, 808, 940
Hpy188III	TCNNGA	2 cut(s)	319, 791
Hpy8I	GTNNAC	2 cut(s)	556, 585
Hpy99I	CGWCG	3 cut(s)	9, 277, 604
HpyAV	CCTTC	2 cut(s)	76, 125
HpyCH4III	ACNGT	4 cut(s)	108, 470, 652, 863
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	6 cut(s)	46, 79, 147, 173, 179, 230
HpyF10VI	GCNNNNNNNGC	6 cut(s)	76, 170, 285, 305, 346, 381
HpyF3I	CTNAG	5 cut(s)	242, 320, 342, 550, 807
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	2 cut(s)	33, 315
HspAI	GCGC	5 cut(s)	33, 68, 70, 277, 597
KpnI	GGTACC	1 cut(s)	921
KroI	GCCGGC	1 cut(s)	210
KroNI	GCCGGC	1 cut(s)	212
Kzo9I	GATC	8 cut(s)	120, 136, 387, 494, 576, 682, 715, 787
LmnI	GCTCC	1 cut(s)	793
Lsp1109I	GCAGC	2 cut(s)	66, 366
LweI	GCATC	2 cut(s)	18, 106
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	2 cut(s)	470, 740
MalI	GATC	8 cut(s)	122, 138, 389, 496, 578, 684, 717, 789
MboI	GATC	8 cut(s)	120, 136, 387, 494, 576, 682, 715, 787
MboII	GAAGA	5 cut(s)	314, 564, 677, 680, 775
MfeI	CAATTG	1 cut(s)	625
MflI	RGATCY	2 cut(s)	387, 715
MluCI	AATT	2 cut(s)	14, 625
MlyI	GAGTC	2 cut(s)	210, 767
MreI	CGCCGGCG	1 cut(s)	210
MroNI	GCCGGC	1 cut(s)	210
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	28
MspI	CCGG	4 cut(s)	102, 211, 363, 385
MspR9I	CCNGG	5 cut(s)	62, 102, 364, 912, 922
MunI	CAATTG	1 cut(s)	625
MvaI	CCWGG	3 cut(s)	62, 912, 922
MvnI	CGCG	3 cut(s)	70, 277, 599
MwoI	GCNNNNNNNGC	6 cut(s)	76, 170, 285, 305, 346, 381
NaeI	GCCGGC	1 cut(s)	212
NciI	CCSGG	2 cut(s)	102, 364
NdeII	GATC	8 cut(s)	120, 136, 387, 494, 576, 682, 715, 787
NgoMIV	GCCGGC	1 cut(s)	210
NlaIII	CATG	2 cut(s)	33, 315
NlaIV	GGNNCC	2 cut(s)	389, 919
NmuCI	GTSAC	1 cut(s)	470
NsbI	TGCGCA	1 cut(s)	34
NspI	RCATGY	2 cut(s)	33, 315
PaeI	GCATGC	1 cut(s)	33
PauI	GCGCGC	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	340
PdiI	GCCGGC	1 cut(s)	212
PfeI	GAWTC	2 cut(s)	604, 730
PflFI	GACNNNGTC	1 cut(s)	551
PflMI	CCANNNNNTGG	1 cut(s)	19
PfoI	TCCNGGA	1 cut(s)	100
PkrI	GCNGC	6 cut(s)	56, 67, 163, 198, 356, 517
Ple19I	CGATCG	1 cut(s)	123
PleI	GAGTC	2 cut(s)	210, 766
PpsI	GAGTC	2 cut(s)	210, 766
Psp6I	CCWGG	3 cut(s)	60, 910, 920
PspGI	CCWGG	3 cut(s)	60, 910, 920
PspN4I	GGNNCC	2 cut(s)	389, 919
PspPI	GGNCC	3 cut(s)	104, 382, 490
PsuI	RGATCY	2 cut(s)	387, 715
PsyI	GACNNNGTC	1 cut(s)	551
PteI	GCGCGC	1 cut(s)	68
PvuI	CGATCG	1 cut(s)	123
RsaI	GTAC	2 cut(s)	834, 919
RsaNI	GTAC	2 cut(s)	833, 918
RseI	CAYNNNNRTG	1 cut(s)	28
Rsr2I	CGGWCCG	1 cut(s)	104
RsrII	CGGWCCG	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	6 cut(s)	55, 66, 162, 197, 355, 516
Sau3AI	GATC	8 cut(s)	120, 136, 387, 494, 576, 682, 715, 787
Sau96I	GGNCC	3 cut(s)	104, 382, 490
SchI	GAGTC	2 cut(s)	210, 767
ScrFI	CCNGG	5 cut(s)	62, 102, 364, 912, 922
SfaNI	GCATC	2 cut(s)	18, 106
SgrAI	CRCCGGYG	1 cut(s)	210
SinI	GGWCC	2 cut(s)	104, 490
SmiMI	CAYNNNNRTG	1 cut(s)	28
SmlI	CTYRAG	2 cut(s)	485, 880
SmoI	CTYRAG	2 cut(s)	485, 880
SphI	GCATGC	1 cut(s)	33
Sse9I	AATT	2 cut(s)	14, 625
SseBI	AGGCCT	1 cut(s)	340
SsiI	CCGC	6 cut(s)	65, 161, 197, 448, 516, 830
SspMI	CTAG	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	340
StyD4I	CCNGG	5 cut(s)	60, 100, 362, 910, 920
TaaI	ACNGT	4 cut(s)	108, 470, 652, 863
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	8 cut(s)	123, 129, 283, 444, 575, 602, 737, 761
TasI	AATT	2 cut(s)	14, 625
TauI	GCSGC	4 cut(s)	68, 164, 199, 518
TfiI	GAWTC	2 cut(s)	604, 730
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	1 cut(s)	655
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	2 cut(s)	54, 354
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	1 cut(s)	628
TspRI	CASTG	1 cut(s)	655
Tth111I	GACNNNGTC	1 cut(s)	551
Van91I	CCANNNNNTGG	1 cut(s)	19
VpaK11BI	GGWCC	2 cut(s)	104, 490
XceI	RCATGY	2 cut(s)	33, 315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	918
XmiI	GTMKAC	1 cut(s)	555
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.