Rmu_sc0001351.1_g000017

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001351.1
OG0002165
Physical Location & Seq
Reverse (-)
59000 .. 59913
914 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 813 bp
atggattctgctcaagtcccgcgtgttgcaatagatttaggagaggatattttaaattatgccaatatcctcaatggaagctcagggcgtaatgataatttgttttcaacatttggttatcctgcatctggtgatactattagctatagtcagaaccctattcgaagtcaagttggtgttcaaagtgaacccaaaaccacaaagagagctaaaagagccaagaatttctccattcaagaagacaaccttcttgtgtctgcctggctcaatactacccttgatccagcaataggaaatgatcaaaaaggtgttgctttttggaaaagaatttgggagtatttctatgctgagaagaactttgaactagagagtgatcgtaatcagggttctctcatgcatcgctggtctggaattcaactggatgtgaacaaattttgtggctattatgctgaaattgaaaggacaagggcaagtgaacttcagattgtggaagccaaacaaaagtttaggagggagcaagtatacaactttacatatgagcattgttggcatgtgttgaagttccacccaaaatggaacttggaactctctaggaaaaaaccaaagaaaactcatgctacgattcctgctacttcgtctcctatcactccatctgctaccccagatacaatagatttagctgatggcgatgttgaaggcaatgagtctccatgcttggagaggcctataggcaaaaaggctgccaagaccttggcaaggaaggcaaaagctaaagcgaaagtggaagcaacccaatctgaattaggagactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

270

Amino Acids

30.47

Weight (kDa)

8.79

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 177 - 267 3.6e-15 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 522
AccII CGCG 1 cut(s) 22
AciI CCGC 1 cut(s) 20
AclWI GGATC 1 cut(s) 275
AcsI RAATTY 4 cut(s) 223, 327, 411, 431
AcuI CTGAAG 1 cut(s) 464
AfiI CCNNNNNNNGG 3 cut(s) 128, 290, 756
AgsI TTSAA 8 cut(s) 108, 182, 236, 362, 416, 458, 559, 695
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 5 cut(s) 81, 144, 209, 680, 770
AluI AGCT 5 cut(s) 81, 144, 209, 680, 770
Alw26I GTCTC 3 cut(s) 642, 711, 801
AlwI GGATC 1 cut(s) 275
AoxI GGCC 1 cut(s) 722
ApeKI GCWGC 1 cut(s) 740
ApoI RAATTY 4 cut(s) 223, 327, 411, 431
AsuHPI GGTGA 1 cut(s) 143
AsuII TTCGAA 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 727
BccI CCATC 2 cut(s) 658, 677
BciT130I CCWGG 1 cut(s) 262
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 3 cut(s) 642, 711, 801
BfaI CTAG 2 cut(s) 365, 591
BfmI CTRYAG 2 cut(s) 145, 726
BisI GCNGC 1 cut(s) 741
BlsI GCNGC 1 cut(s) 742
Bme1390I CCNGG 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 2 cut(s) 134, 406
BpiI GAAGAC 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 82
Bpu14I TTCGAA 1 cut(s) 163
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 750
BsaXI ACNNNNNCTCC 2 cut(s) 622, 652
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 290, 756
Bse1I ACTGG 1 cut(s) 423
Bse3DI GCAATG 1 cut(s) 706
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 750
BseGI GGATG 1 cut(s) 427
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 3 cut(s) 128, 290, 756
BseMI GCAATG 1 cut(s) 706
BseMII CTCAG 2 cut(s) 96, 339
BseNI ACTGG 1 cut(s) 423
BseXI GCAGC 1 cut(s) 727
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 1 cut(s) 724
BslFI GGGAC 1 cut(s) 2
BslI CCNNNNNNNGG 3 cut(s) 128, 290, 756
BsmAI GTCTC 3 cut(s) 642, 711, 801
BsmBI CGTCTC 1 cut(s) 642
BsmFI GGGAC 1 cut(s) 2
BsnI GGCC 1 cut(s) 724
Bsp119I TTCGAA 1 cut(s) 163
Bsp143I GATC 3 cut(s) 280, 298, 373
BspACI CCGC 1 cut(s) 20
BspANI GGCC 1 cut(s) 724
BspCNI CTCAG 2 cut(s) 95, 340
BspFNI CGCG 1 cut(s) 22
BspPI GGATC 1 cut(s) 275
BspT104I TTCGAA 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 706
BsrI ACTGG 1 cut(s) 423
BssECI CCNNGG 1 cut(s) 750
BssMI GATC 3 cut(s) 280, 298, 373
BssNAI GTATAC 1 cut(s) 523
BssT1I CCWWGG 1 cut(s) 750
Bst1107I GTATAC 1 cut(s) 523
Bst2UI CCWGG 1 cut(s) 262
BstBI TTCGAA 1 cut(s) 163
BstDEI CTNAG 2 cut(s) 82, 348
BstENI CCTNNNNNAGG 1 cut(s) 754
BstF5I GGATG 1 cut(s) 427
BstFNI CGCG 1 cut(s) 22
BstKTI GATC 3 cut(s) 283, 301, 376
BstMAI GTCTC 3 cut(s) 642, 711, 801
BstMBI GATC 3 cut(s) 280, 298, 373
BstMWI GCNNNNNNNGC 3 cut(s) 215, 547, 761
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 554
BstSCI CCNGG 1 cut(s) 260
BstSFI CTRYAG 2 cut(s) 145, 726
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 727
BstV2I GAAGAC 1 cut(s) 246
BstXI CCANNNNNNTGG 1 cut(s) 751
BstZ17I GTATAC 1 cut(s) 523
BsuRI GGCC 1 cut(s) 724
BtgZI GCGATG 2 cut(s) 383, 702
BtsCI GGATG 1 cut(s) 427
CspCI CAANNNNNGTGG 2 cut(s) 418, 453
CviAII CATG 4 cut(s) 394, 551, 614, 711
DdeI CTNAG 2 cut(s) 82, 348
DpnI GATC 3 cut(s) 282, 300, 375
DpnII GATC 3 cut(s) 280, 298, 373
DraI TTTAAA 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 750
Eco147I AGGCCT 1 cut(s) 724
Eco57I CTGAAG 1 cut(s) 464
EcoNI CCTNNNNNAGG 1 cut(s) 754
EcoRI GAATTC 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 750
EcoT22I ATGCAT 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 750
Esp3I CGTCTC 1 cut(s) 642
FaeI CATG 4 cut(s) 397, 554, 617, 714
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FaqI GGGAC 1 cut(s) 2
FatI CATG 4 cut(s) 393, 550, 613, 710
FauI CCCGC 1 cut(s) 27
FauNDI CATATG 1 cut(s) 535
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 1 cut(s) 522
Fnu4HI GCNGC 1 cut(s) 741
FokI GGATG 1 cut(s) 434
Fsp4HI GCNGC 1 cut(s) 741
FspBI CTAG 2 cut(s) 365, 591
GluI GCNGC 1 cut(s) 741
HaeIII GGCC 1 cut(s) 724
Hin1II CATG 4 cut(s) 397, 554, 617, 714
HinfI GANTC 3 cut(s) 5, 622, 704
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 4 cut(s) 188, 427, 476, 523
Hpy188I TCNGA 3 cut(s) 153, 483, 799
Hpy188III TCNNGA 2 cut(s) 236, 408
Hpy8I GTNNAC 4 cut(s) 188, 427, 476, 523
HpyAV CCTTC 3 cut(s) 257, 689, 754
HpyCH4V TGCA 3 cut(s) 29, 125, 397
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 547, 761
HpyF3I CTNAG 2 cut(s) 82, 348
Hsp92II CATG 4 cut(s) 397, 554, 617, 714
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 3 cut(s) 280, 298, 373
LmnI GCTCC 1 cut(s) 514
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 2 cut(s) 134, 406
MaeI CTAG 2 cut(s) 365, 591
MalI GATC 3 cut(s) 282, 300, 375
MboI GATC 3 cut(s) 280, 298, 373
MboII GAAGA 2 cut(s) 251, 364
MluCI AATT 8 cut(s) 55, 97, 223, 327, 411, 431, 453, 800
MlyI GAGTC 1 cut(s) 713
MnlI CCTC 4 cut(s) 37, 80, 504, 714
Mph1103I ATGCAT 1 cut(s) 399
MseI TTAA 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 262
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 3 cut(s) 215, 547, 761
NdeI CATATG 1 cut(s) 535
NdeII GATC 3 cut(s) 280, 298, 373
NlaIII CATG 4 cut(s) 397, 554, 617, 714
NsiI ATGCAT 1 cut(s) 399
NspI RCATGY 1 cut(s) 554
NspV TTCGAA 1 cut(s) 163
PceI AGGCCT 1 cut(s) 724
PfeI GAWTC 2 cut(s) 5, 622
PkrI GCNGC 1 cut(s) 742
PleI GAGTC 1 cut(s) 712
PpsI GAGTC 1 cut(s) 712
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PsrI GAACNNNNNNTAC 2 cut(s) 370, 402
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 1 cut(s) 741
Sau3AI GATC 3 cut(s) 280, 298, 373
SchI GAGTC 1 cut(s) 713
ScrFI CCNGG 1 cut(s) 262
SetI ASST 8 cut(s) 83, 146, 211, 249, 310, 682, 752, 772
SfaNI GCATC 2 cut(s) 134, 406
SfcI CTRYAG 2 cut(s) 145, 726
SfuI TTCGAA 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 8 cut(s) 55, 97, 223, 327, 411, 431, 453, 800
SseBI AGGCCT 1 cut(s) 724
SsiI CCGC 1 cut(s) 20
SspMI CTAG 2 cut(s) 365, 591
StuI AGGCCT 1 cut(s) 724
StyD4I CCNGG 1 cut(s) 260
StyI CCWWGG 1 cut(s) 750
TaqI TCGA 1 cut(s) 163
TasI AATT 8 cut(s) 55, 97, 223, 327, 411, 431, 453, 800
TfiI GAWTC 2 cut(s) 5, 622
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TseI GCWGC 1 cut(s) 740
XagI CCTNNNNNAGG 1 cut(s) 754
XapI RAATTY 4 cut(s) 223, 327, 411, 431
XceI RCATGY 1 cut(s) 554
XmiI GTMKAC 1 cut(s) 522
XspI CTAG 2 cut(s) 365, 591
Zsp2I ATGCAT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.