Rmu_sc0001785.1_g000002

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001785.1
OG0004548
Physical Location & Seq
Reverse (-)
5267 .. 5776
510 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 510 bp
atgatcgtatactcattgttcaaacctgaagttgaagacaaggtcgacactaacgatcatcatcaggtcgagatgaatttctcacctgcagccgctccgaattggttgcacttggaggtaccagtagttccggtgctagttgacactgaatcggttaatcaacttccggttgtgcaataccggaatcgaatgatggagagaagagatcaatcgcgatatagagatcacgaggatgacgagtctatgtgtatagtgtgcatgaatagcatagaggctatagatgaagtaagagagctgaagagctgttcccacgtctatcatagagagtgcttggatctttgggttgctcagggtcaggtaacctgtcctctgtgcaggtctaagctattgccaactgctagggctactccaaatgaacatttgaaacctgcgggaggggatccatggagatcggagaggatgatttacttgttcggtgatgattgcttcaagcactggatagacgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

169

Amino Acids

19.73

Weight (kDa)

5.11

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 81 - 126 3.5e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 82 - 126 8.4e-11 Ring finger domain
zf-C3HC4_2 PF13923 82 - 125 2.9e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 83 - 125 6.3e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 83 - 111 1.3e-06 RING-like zinc finger
zf-RING_UBOX PF13445 83 - 123 6.9e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 94
Acc36I ACCTGC 3 cut(s) 94, 366, 436
Acc65I GGTACC 1 cut(s) 118
AccB1I GGYRCC 1 cut(s) 118
AccBSI CCGCTC 1 cut(s) 95
AccI GTMKAC 2 cut(s) 9, 45
AccII CGCG 1 cut(s) 214
AciI CCGC 2 cut(s) 93, 431
AclWI GGATC 3 cut(s) 342, 434, 447
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 2 cut(s) 48, 317
AfaI GTAC 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 434
AgsI TTSAA 4 cut(s) 22, 35, 424, 490
AjiI CACGTC 1 cut(s) 313
AluBI AGCT 3 cut(s) 295, 303, 385
AluI AGCT 3 cut(s) 295, 303, 385
AlwI GGATC 3 cut(s) 342, 434, 447
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 76
Asp718I GGTACC 1 cut(s) 118
AsuHPI GGTGA 2 cut(s) 75, 488
BamHI GGATCC 1 cut(s) 439
BanI GGYRCC 1 cut(s) 118
BauI CACGAG 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 101
BccI CCATC 1 cut(s) 187
BcgI CGANNNNNNTGC 2 cut(s) 88, 122
BfaI CTAG 2 cut(s) 137, 399
BfmI CTRYAG 2 cut(s) 87, 276
BfuAI ACCTGC 3 cut(s) 94, 366, 436
BisI GCNGC 2 cut(s) 90, 93
BlsI GCNGC 2 cut(s) 91, 94
BmgBI CACGTC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 120, 441
BpiI GAAGAC 1 cut(s) 42
Bpu10I CCTNAGC 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 443
BsaWI WCCGGW 3 cut(s) 130, 166, 180
Bsc4I CCNNNNNNNGG 1 cut(s) 434
Bse1I ACTGG 2 cut(s) 122, 500
Bse8I GATNNNNATC 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 443
BseGI GGATG 2 cut(s) 238, 465
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 434
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 2 cut(s) 122, 500
BseXI GCAGC 1 cut(s) 101
BsgI GTGCAG 1 cut(s) 394
Bsh1236I CGCG 1 cut(s) 214
BshNI GGYRCC 1 cut(s) 118
BsiSI CCGG 3 cut(s) 131, 167, 181
BslI CCNNNNNNNGG 1 cut(s) 434
Bsp143I GATC 7 cut(s) 3, 55, 205, 223, 334, 439, 449
Bsp19I CCATGG 1 cut(s) 443
Bsp68I TCGCGA 1 cut(s) 214
BspACI CCGC 2 cut(s) 93, 431
BspCNI CTCAG 1 cut(s) 361
BspFNI CGCG 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 120, 441
BspMAI CTGCAG 1 cut(s) 91
BspMI ACCTGC 3 cut(s) 94, 366, 436
BspPI GGATC 3 cut(s) 342, 434, 447
BspQI GCTCTTC 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 118
BsrBI CCGCTC 1 cut(s) 95
BsrI ACTGG 2 cut(s) 122, 500
BssECI CCNNGG 1 cut(s) 443
BssMI GATC 7 cut(s) 3, 55, 205, 223, 334, 439, 449
BssNAI GTATAC 1 cut(s) 10
BssSI CACGAG 1 cut(s) 227
BssT1I CCWWGG 1 cut(s) 443
Bst1107I GTATAC 1 cut(s) 10
Bst2BI CACGAG 1 cut(s) 227
Bst6I CTCTTC 2 cut(s) 196, 293
BstDEI CTNAG 2 cut(s) 348, 381
BstDSI CCRYGG 1 cut(s) 443
BstEII GGTNACC 1 cut(s) 358
BstENI CCTNNNNNAGG 1 cut(s) 432
BstF5I GGATG 2 cut(s) 238, 465
BstFNI CGCG 1 cut(s) 214
BstKTI GATC 7 cut(s) 6, 58, 208, 226, 337, 442, 452
BstMBI GATC 7 cut(s) 3, 55, 205, 223, 334, 439, 449
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstPI GGTNACC 1 cut(s) 358
BstSFI CTRYAG 2 cut(s) 87, 276
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 101
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 2 cut(s) 334, 439
BstYI RGATCY 2 cut(s) 334, 439
BstZ17I GTATAC 1 cut(s) 10
BtgI CCRYGG 1 cut(s) 443
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 2 cut(s) 238, 465
BtsIMutI CAGTG 2 cut(s) 144, 493
BtuMI TCGCGA 1 cut(s) 214
BveI ACCTGC 3 cut(s) 94, 366, 436
Csp6I GTAC 1 cut(s) 119
CviAII CATG 2 cut(s) 259, 444
CviJI RGCY 6 cut(s) 92, 275, 295, 303, 385, 404
CviKI_1 RGCY 6 cut(s) 92, 275, 295, 303, 385, 404
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 2 cut(s) 348, 381
DpnI GATC 7 cut(s) 5, 57, 207, 225, 336, 441, 451
DpnII GATC 7 cut(s) 3, 55, 205, 223, 334, 439, 449
Eam1104I CTCTTC 2 cut(s) 196, 293
EarI CTCTTC 2 cut(s) 196, 293
Eco130I CCWWGG 1 cut(s) 443
Eco57I CTGAAG 2 cut(s) 48, 317
Eco91I GGTNACC 1 cut(s) 358
EcoNI CCTNNNNNAGG 1 cut(s) 432
EcoO65I GGTNACC 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 443
ErhI CCWWGG 1 cut(s) 443
FaeI CATG 2 cut(s) 262, 447
FaiI YATR 9 cut(s) 10, 219, 245, 251, 260, 269, 278, 321, 445
FatI CATG 2 cut(s) 258, 443
FauI CCCGC 1 cut(s) 424
FblI GTMKAC 2 cut(s) 9, 45
Fnu4HI GCNGC 2 cut(s) 90, 93
FokI GGATG 2 cut(s) 245, 472
Fsp4HI GCNGC 2 cut(s) 90, 93
FspBI CTAG 2 cut(s) 137, 399
GluI GCNGC 2 cut(s) 90, 93
HapII CCGG 3 cut(s) 131, 167, 181
Hin1II CATG 2 cut(s) 262, 447
HincII GTYRAC 2 cut(s) 46, 142
HindII GTYRAC 2 cut(s) 46, 142
HinfI GANTC 3 cut(s) 149, 184, 239
HpaII CCGG 3 cut(s) 131, 167, 181
HphI GGTGA 2 cut(s) 75, 488
Hpy166II GTNNAC 3 cut(s) 10, 46, 142
Hpy188I TCNGA 2 cut(s) 99, 454
Hpy188III TCNNGA 3 cut(s) 70, 213, 227
Hpy8I GTNNAC 3 cut(s) 10, 46, 142
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 5 cut(s) 89, 109, 175, 258, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
HpyF3I CTNAG 2 cut(s) 348, 381
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 2 cut(s) 262, 447
KpnI GGTACC 1 cut(s) 122
Kzo9I GATC 7 cut(s) 3, 55, 205, 223, 334, 439, 449
LguI GCTCTTC 1 cut(s) 293
LmnI GCTCC 1 cut(s) 100
Lsp1109I GCAGC 1 cut(s) 101
MaeI CTAG 2 cut(s) 137, 399
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 358
MalI GATC 7 cut(s) 5, 57, 207, 225, 336, 441, 451
MbiI CCGCTC 1 cut(s) 95
MboI GATC 7 cut(s) 3, 55, 205, 223, 334, 439, 449
MboII GAAGA 3 cut(s) 47, 213, 310
MflI RGATCY 2 cut(s) 334, 439
MluCI AATT 2 cut(s) 76, 100
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 6 cut(s) 109, 223, 265, 378, 428, 450
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 231
MspI CCGG 3 cut(s) 131, 167, 181
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 264
NcoI CCATGG 1 cut(s) 443
NdeII GATC 7 cut(s) 3, 55, 205, 223, 334, 439, 449
NlaIII CATG 2 cut(s) 262, 447
NlaIV GGNNCC 2 cut(s) 120, 441
NruI TCGCGA 1 cut(s) 214
PaqCI CACCTGC 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 293
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 234
PfeI GAWTC 2 cut(s) 149, 184
PflFI GACNNNGTC 1 cut(s) 41
PkrI GCNGC 2 cut(s) 91, 94
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 358
PspN4I GGNNCC 2 cut(s) 120, 441
PsrI GAACNNNNNNTAC 2 cut(s) 111, 143
PstI CTGCAG 1 cut(s) 91
PsuI RGATCY 2 cut(s) 334, 439
PsyI GACNNNGTC 1 cut(s) 41
RruI TCGCGA 1 cut(s) 214
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 231
SalI GTCGAC 1 cut(s) 44
SapI GCTCTTC 1 cut(s) 293
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 90, 93
Sau3AI GATC 7 cut(s) 3, 55, 205, 223, 334, 439, 449
SchI GAGTC 1 cut(s) 248
SfcI CTRYAG 2 cut(s) 87, 276
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 2 cut(s) 76, 100
SsiI CCGC 2 cut(s) 93, 431
SspMI CTAG 2 cut(s) 137, 399
StyI CCWWGG 1 cut(s) 443
TaiI ACGT 1 cut(s) 315
TaqI TCGA 3 cut(s) 45, 69, 187
TasI AATT 2 cut(s) 76, 100
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 2 cut(s) 149, 184
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 151, 500
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 4 cut(s) 89, 275, 297, 429
TspRI CASTG 2 cut(s) 151, 500
Tth111I GACNNNGTC 1 cut(s) 41
XagI CCTNNNNNAGG 1 cut(s) 432
XapI RAATTY 1 cut(s) 76
XmiI GTMKAC 2 cut(s) 9, 45
XspI CTAG 2 cut(s) 137, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.