Rmu_sc0002414.1_g000006

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002414.1
OG0005167
Physical Location & Seq
Forward (+)
8123 .. 10038
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 741 bp
atgtcggctgcatttccaaacctagagaaaatggatattcaagagtgcagatttttgggaaacttgttttcagagctttgtgatctgattcagctaaagaaacccggtatcattgaccattctgatgtagaagctttgcctaaagaaattagaaatttggtcaactcagaagtactgaggttaaggtcttgttataaccttttgaagttaccaagctcagttagaaatctcgaaaagttaaaacctcttgacatatttaacggcatcaacttcaaggaattgcctccatcaattggtgaattgagcagtttaagaaagttgaacaaaatgaaaagtttaagaaagttgaacaaaatgaaagaactacctctgtcagttttgtatcggttaaaggaagcagtgatatgtgatgacgctaccaaaacctttatcggatctggcagcggcagtcttagaccacaagatcgctctcgtccggtggctacccaggcatcttgggtagcctttggcctcgccaacgccgtgcggtctgctgccggacggggatgcaagctaacgttttggggagctcctattgagtggtcttgcttgaggtgtttgcagatcggggtgtgtcgtggtgatgctgggtgtggcggcgtggttcagggtgatttgggatgtggtgattggttcatagcggcgggatcatggcagagcaggcatggcgttgggatctgttcgatggttaggcgtgtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

246

Amino Acids

27.1

Weight (kDa)

9.34

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 4 - 122 1.5e-12 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
AccB7I CCANNNNNTGG 1 cut(s) 293
AciI CCGC 5 cut(s) 444, 526, 636, 680, 683
AclI AACGTT 1 cut(s) 557
AclWI GGATC 3 cut(s) 442, 694, 722
AcsI RAATTY 1 cut(s) 154
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 5 cut(s) 41, 205, 274, 322, 349
AjnI CCWGG 1 cut(s) 486
AluBI AGCT 6 cut(s) 76, 94, 134, 216, 553, 569
AluI AGCT 6 cut(s) 76, 94, 134, 216, 553, 569
Alw21I GWGCWC 1 cut(s) 571
AlwI GGATC 3 cut(s) 442, 694, 722
AoxI GGCC 1 cut(s) 508
ApeKI GCWGC 3 cut(s) 8, 441, 533
ApoI RAATTY 1 cut(s) 154
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 4 cut(s) 308, 632, 662, 677
BanII GRGCYC 1 cut(s) 571
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 2 cut(s) 453, 520
BccI CCATC 2 cut(s) 295, 718
BceAI ACGGC 2 cut(s) 277, 506
BciT130I CCWGG 1 cut(s) 488
BcnI CCSGG 1 cut(s) 105
BfaI CTAG 1 cut(s) 23
BisI GCNGC 6 cut(s) 9, 442, 445, 534, 637, 681
BlsI GCNGC 6 cut(s) 10, 443, 446, 535, 638, 682
BmcAI AGTACT 1 cut(s) 174
Bme1390I CCNGG 2 cut(s) 105, 488
BmrFI CCNGG 2 cut(s) 105, 488
BmsI GCATC 4 cut(s) 273, 500, 536, 613
BpuEI CTTGAG 1 cut(s) 610
BpuMI CCSGG 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 486
BsaWI WCCGGW 1 cut(s) 475
Bsc4I CCNNNNNNNGG 1 cut(s) 293
BseBI CCWGG 1 cut(s) 488
BseDI CCNNGG 1 cut(s) 486
BseGI GGATG 2 cut(s) 551, 665
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 3 cut(s) 167, 180, 231
BseXI GCAGC 2 cut(s) 453, 520
BseYI CCCAGC 1 cut(s) 626
BsgI GTGCAG 1 cut(s) 67
BshFI GGCC 1 cut(s) 510
BsiHKAI GWGCWC 1 cut(s) 571
BsiSI CCGG 3 cut(s) 105, 476, 537
BslI CCNNNNNNNGG 1 cut(s) 293
BsnI GGCC 1 cut(s) 510
Bsp1286I GDGCHC 1 cut(s) 571
Bsp143I GATC 6 cut(s) 82, 434, 463, 603, 686, 714
BspACI CCGC 5 cut(s) 444, 526, 636, 680, 683
BspANI GGCC 1 cut(s) 510
BspCNI CTCAG 3 cut(s) 168, 179, 230
BspPI GGATC 3 cut(s) 442, 694, 722
BssECI CCNNGG 1 cut(s) 486
BssMI GATC 6 cut(s) 82, 434, 463, 603, 686, 714
Bst2UI CCWGG 1 cut(s) 488
BstC8I GCNNGC 2 cut(s) 551, 701
BstDEI CTNAG 4 cut(s) 166, 176, 217, 452
BstF5I GGATG 2 cut(s) 551, 665
BstKTI GATC 6 cut(s) 85, 437, 466, 606, 689, 717
BstMBI GATC 6 cut(s) 82, 434, 463, 603, 686, 714
BstMWI GCNNNNNNNGC 3 cut(s) 488, 700, 705
BstNI CCWGG 1 cut(s) 488
BstSCI CCNGG 2 cut(s) 103, 486
BstV1I GCAGC 2 cut(s) 453, 520
BstX2I RGATCY 2 cut(s) 434, 714
BstYI RGATCY 2 cut(s) 434, 714
BsuRI GGCC 1 cut(s) 510
BtsCI GGATG 2 cut(s) 551, 665
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 2 cut(s) 551, 701
CseI GACGC 1 cut(s) 422
Csp6I GTAC 1 cut(s) 173
CviAII CATG 2 cut(s) 690, 704
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 4 cut(s) 166, 176, 217, 452
DpnI GATC 6 cut(s) 84, 436, 465, 605, 688, 716
DpnII GATC 6 cut(s) 82, 434, 463, 603, 686, 714
Ecl136II GAGCTC 1 cut(s) 569
Eco24I GRGCYC 1 cut(s) 571
Eco53kI GAGCTC 1 cut(s) 569
EcoICRI GAGCTC 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 486
EcoT38I GRGCYC 1 cut(s) 571
FaeI CATG 2 cut(s) 693, 707
FaiI YATR 6 cut(s) 195, 254, 406, 677, 691, 705
FatI CATG 2 cut(s) 689, 703
FauI CCCGC 1 cut(s) 676
Fnu4HI GCNGC 6 cut(s) 9, 442, 445, 534, 637, 681
FokI GGATG 2 cut(s) 558, 672
FriOI GRGCYC 1 cut(s) 571
Fsp4HI GCNGC 6 cut(s) 9, 442, 445, 534, 637, 681
FspBI CTAG 1 cut(s) 23
GluI GCNGC 6 cut(s) 9, 442, 445, 534, 637, 681
GsaI CCCAGC 1 cut(s) 630
HaeIII GGCC 1 cut(s) 510
HapII CCGG 3 cut(s) 105, 476, 537
HgaI GACGC 1 cut(s) 422
Hin1II CATG 2 cut(s) 693, 707
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 1 cut(s) 88
HpaII CCGG 3 cut(s) 105, 476, 537
HphI GGTGA 4 cut(s) 308, 632, 662, 677
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 5 cut(s) 73, 87, 124, 169, 434
Hpy188III TCNNGA 3 cut(s) 41, 230, 248
Hpy8I GTNNAC 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 557
HpyCH4V TGCA 4 cut(s) 11, 48, 549, 601
HpyF10VI GCNNNNNNNGC 3 cut(s) 488, 700, 705
HpyF3I CTNAG 4 cut(s) 166, 176, 217, 452
HpySE526I ACGT 1 cut(s) 557
Hsp92II CATG 2 cut(s) 693, 707
Kzo9I GATC 6 cut(s) 82, 434, 463, 603, 686, 714
LmnI GCTCC 2 cut(s) 566, 574
LpnPI CCDG 9 cut(s) 118, 423, 473, 489, 500, 550, 612, 632, 685
Lsp1109I GCAGC 2 cut(s) 453, 520
LweI GCATC 4 cut(s) 273, 500, 536, 613
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 557
MaeIII GTNAC 1 cut(s) 207
MalI GATC 6 cut(s) 84, 436, 465, 605, 688, 716
MboI GATC 6 cut(s) 82, 434, 463, 603, 686, 714
MfeI CAATTG 1 cut(s) 291
MflI RGATCY 2 cut(s) 434, 714
MhlI GDGCHC 1 cut(s) 571
MluCI AATT 5 cut(s) 147, 154, 278, 291, 299
MnlI CCTC 6 cut(s) 171, 255, 294, 378, 521, 585
MseI TTAA 6 cut(s) 182, 239, 258, 311, 338, 389
MslI CAYNNNNRTG 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 444
MspI CCGG 3 cut(s) 105, 476, 537
MspR9I CCNGG 2 cut(s) 105, 488
MunI CAATTG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 488
MwoI GCNNNNNNNGC 3 cut(s) 488, 700, 705
NciI CCSGG 1 cut(s) 105
NdeII GATC 6 cut(s) 82, 434, 463, 603, 686, 714
NlaIII CATG 2 cut(s) 693, 707
PcsI WCGNNNNNNNCGW 1 cut(s) 519
PfeI GAWTC 1 cut(s) 88
PflMI CCANNNNNTGG 1 cut(s) 293
PkrI GCNGC 6 cut(s) 10, 443, 446, 535, 638, 682
PsiI TTATAA 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 571
Psp1406I AACGTT 1 cut(s) 557
Psp6I CCWGG 1 cut(s) 486
PspFI CCCAGC 1 cut(s) 626
PspGI CCWGG 1 cut(s) 486
PsuI RGATCY 2 cut(s) 434, 714
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 123
SacI GAGCTC 1 cut(s) 571
SaqAI TTAA 6 cut(s) 182, 239, 258, 311, 338, 389
SatI GCNGC 6 cut(s) 9, 442, 445, 534, 637, 681
Sau3AI GATC 6 cut(s) 82, 434, 463, 603, 686, 714
ScaI AGTACT 1 cut(s) 174
ScrFI CCNGG 2 cut(s) 105, 488
SduI GDGCHC 1 cut(s) 571
SfaNI GCATC 4 cut(s) 273, 500, 536, 613
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
Sse9I AATT 5 cut(s) 147, 154, 278, 291, 299
SsiI CCGC 5 cut(s) 444, 526, 636, 680, 683
SspMI CTAG 1 cut(s) 23
SstI GAGCTC 1 cut(s) 571
StyD4I CCNGG 2 cut(s) 103, 486
TaiI ACGT 1 cut(s) 560
TaqI TCGA 2 cut(s) 231, 722
TasI AATT 5 cut(s) 147, 154, 278, 291, 299
TatI WGTACW 1 cut(s) 172
TauI GCSGC 3 cut(s) 447, 639, 683
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 6 cut(s) 182, 239, 258, 311, 338, 389
Tru9I TTAA 6 cut(s) 182, 239, 258, 311, 338, 389
TscAI CASTG 1 cut(s) 405
TseI GCWGC 3 cut(s) 8, 441, 533
TspDTI ATGAA 3 cut(s) 344, 371, 664
TspRI CASTG 1 cut(s) 405
Van91I CCANNNNNTGG 1 cut(s) 293
XapI RAATTY 1 cut(s) 154
XspI CTAG 1 cut(s) 23
ZrmI AGTACT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.