Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004283.1

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

41980 .. 43104

Gene Structure 1125 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

atgatgcaagtctacggagaccagagaggtccttatggtccaatgaagaattctatgggtcctgtcaagaatcaagatccatgtaagccacgctatatgccttttccggctaatcaccggaaccaggtaccgccggtcggtcattttcagccccaatttcttccacctcgaccaaacttctacccatctccacaaaccctggtgccatctggtgggtacaattttcaggggcagggtgattctacttcagcaagttctgtccctcatcgtctaccatcacaatgcgtaactccggttaacagtgctggtccagtagtctccggtttgcttgggtctctaatggcacaaggtgtggtctcattgaaaaatcaaagcagaggaggactggcacaaggtgtgatttcactaaattttgtacctcctgtaccacatcgaggagcatttcctgttcaaaatgctgctgttgttccagtagtagttcctggtttgattgatgctctcctggcacaaggtgtgatttcattgaagaaacaaagcccggcactgaaagaggagaaggatgctgtggtaggatgtgagttttccggccttgatctaaatctgcatcgcgtatctgtggtaatcggcttgtatgagggtggtctgccaaggcaatgtaaaagctgtggcctccggttcaagtgtgaagaacatcacagcaggcatatggattggcatgtcaagaagaaccggatgtccaaaacccgcaagcagaagccctctcgtaacttttacgcaactacaagcatgtggcttgttactgaagtagaggttgaggctgaggcattaccttctggtgtagttttgtgcgctgctgacaccagtggcgtggcggaaaagaaaaggaagactagtgatgaagaaatggttgttcctgcggacgaggatcagagtaaatgtgccttatgcacagatgcttttgttgagttttatagtcatgagaaagatgagtggatgtataaaggtgctgtttacttgaatgcgcctcaggggccagcgccggagatggatcggtcacagttgggtcctatagtccatgccaaatgctggtcggagggtagtaggaaacgtctgcggaggggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

374

Amino Acids

40.9

Weight (kDa)

9.08

Isoelectric Point (pI)

55.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_PCFS4	PF23228	299 - 365	4.1e-28	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	127
AccB1I	GGYRCC	2 cut(s)	127, 202
AccB7I	CCANNNNNTGG	2 cut(s)	212, 1086
AccI	GTMKAC	2 cut(s)	12, 271
AccII	CGCG	1 cut(s)	609
AciI	CCGC	5 cut(s)	131, 745, 872, 917, 1114
AclWI	GGATC	3 cut(s)	71, 933, 1056
AcsI	RAATTY	2 cut(s)	49, 409
AcuI	CTGAAG	2 cut(s)	231, 822
AdeI	CACNNNGTG	3 cut(s)	350, 395, 512
AfaI	GTAC	4 cut(s)	129, 218, 417, 426
AfiI	CCNNNNNNNGG	5 cut(s)	124, 137, 212, 434, 1086
AgsI	TTSAA	5 cut(s)	364, 452, 526, 679, 1018
AhlI	ACTAGT	1 cut(s)	890
AjnI	CCWGG	4 cut(s)	123, 198, 481, 501
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
AloI	GAACNNNNNNTCC	2 cut(s)	719, 751
AluBI	AGCT	1 cut(s)	663
AluI	AGCT	1 cut(s)	663
Alw26I	GTCTC	4 cut(s)	12, 322, 339, 361
AlwI	GGATC	3 cut(s)	71, 933, 1056
AoxI	GGCC	3 cut(s)	586, 667, 1031
ApeKI	GCWGC	2 cut(s)	458, 851
ApoI	RAATTY	2 cut(s)	49, 409
Asp718I	GGTACC	1 cut(s)	127
AspLEI	GCGC	3 cut(s)	851, 1024, 1039
AspS9I	GGNCC	6 cut(s)	29, 38, 59, 308, 1031, 1064
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	2 cut(s)	107, 248
AvaII	GGWCC	5 cut(s)	29, 38, 59, 308, 1064
AxyI	CCTNAGG	1 cut(s)	1026
BanI	GGYRCC	2 cut(s)	127, 202
BbsI	GAAGAC	1 cut(s)	893
BbvCI	CCTCAGC	1 cut(s)	819
BbvI	GCAGC	2 cut(s)	445, 838
BccI	CCATC	4 cut(s)	193, 214, 283, 1039
BciT130I	CCWGG	4 cut(s)	125, 200, 483, 503
BcnI	CCSGG	1 cut(s)	539
BcoDI	GTCTC	4 cut(s)	12, 322, 339, 361
BcuI	ACTAGT	1 cut(s)	890
BfaI	CTAG	1 cut(s)	891
BfmI	CTRYAG	1 cut(s)	1068
BfoI	RGCGCY	1 cut(s)	1040
BglI	GCCNNNNNGGC	1 cut(s)	1030
BisI	GCNGC	2 cut(s)	459, 852
BlsI	GCNGC	2 cut(s)	460, 853
Bme1390I	CCNGG	5 cut(s)	125, 200, 483, 503, 539
Bme18I	GGWCC	5 cut(s)	29, 38, 59, 308, 1064
BmgT120I	GGNCC	6 cut(s)	29, 38, 59, 308, 1031, 1064
BmiI	GGNNCC	6 cut(s)	60, 122, 129, 204, 1032, 1065
BmrFI	CCNGG	5 cut(s)	125, 200, 483, 503, 539
BmsI	GCATC	4 cut(s)	484, 550, 613, 943
BpiI	GAAGAC	1 cut(s)	893
Bpu10I	CCTNAGC	1 cut(s)	819
BpuMI	CCSGG	1 cut(s)	539
BsaBI	GATNNNNATC	1 cut(s)	597
BsaI	GGTCTC	3 cut(s)	12, 339, 361
BsaJI	CCNNGG	2 cut(s)	198, 647
BsaWI	WCCGGW	5 cut(s)	117, 292, 320, 672, 729
Bsc4I	CCNNNNNNNGG	5 cut(s)	124, 137, 212, 434, 1086
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	4 cut(s)	311, 390, 470, 861
Bse21I	CCTNAGG	1 cut(s)	1026
Bse3DI	GCAATG	1 cut(s)	659
Bse8I	GATNNNNATC	1 cut(s)	597
BseBI	CCWGG	4 cut(s)	125, 200, 483, 503
BseDI	CCNNGG	2 cut(s)	198, 647
BseGI	GGATG	4 cut(s)	565, 578, 738, 999
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	5 cut(s)	124, 137, 212, 434, 1086
BseMI	GCAATG	1 cut(s)	659
BseMII	CTCAG	2 cut(s)	810, 1040
BseNI	ACTGG	4 cut(s)	311, 390, 470, 861
BseRI	GAGGAG	3 cut(s)	393, 450, 566
BseXI	GCAGC	2 cut(s)	445, 838
Bsh1236I	CGCG	1 cut(s)	609
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	3 cut(s)	588, 669, 1033
BshNI	GGYRCC	2 cut(s)	127, 202
BsiEI	CGRYCG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	5 cut(s)	124, 137, 212, 434, 1086
BsmAI	GTCTC	4 cut(s)	12, 322, 339, 361
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	1024
BsnI	GGCC	3 cut(s)	588, 669, 1033
Bso31I	GGTCTC	3 cut(s)	12, 339, 361
Bsp143I	GATC	4 cut(s)	76, 592, 925, 1048
BspACI	CCGC	5 cut(s)	131, 745, 872, 917, 1114
BspANI	GGCC	3 cut(s)	588, 669, 1033
BspCNI	CTCAG	2 cut(s)	811, 1039
BspFNI	CGCG	1 cut(s)	609
BspHI	TCATGA	1 cut(s)	976
BspLI	GGNNCC	6 cut(s)	60, 122, 129, 204, 1032, 1065
BspPI	GGATC	3 cut(s)	71, 933, 1056
BspT107I	GGYRCC	2 cut(s)	127, 202
BspTNI	GGTCTC	3 cut(s)	12, 339, 361
BsrDI	GCAATG	1 cut(s)	659
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	4 cut(s)	311, 390, 470, 861
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	198, 647
BssMI	GATC	4 cut(s)	76, 592, 925, 1048
BssT1I	CCWWGG	1 cut(s)	647
Bst2UI	CCWGG	4 cut(s)	125, 200, 483, 503
Bst4CI	ACNGT	2 cut(s)	302, 1059
BstC8I	GCNNGC	3 cut(s)	701, 749, 1035
BstDEI	CTNAG	2 cut(s)	819, 1026
BstF5I	GGATG	4 cut(s)	565, 578, 738, 999
BstFNI	CGCG	1 cut(s)	609
BstH2I	RGCGCY	1 cut(s)	1040
BstHHI	GCGC	3 cut(s)	851, 1024, 1039
BstKTI	GATC	4 cut(s)	79, 595, 928, 1051
BstMAI	GTCTC	4 cut(s)	12, 322, 339, 361
BstMBI	GATC	4 cut(s)	76, 592, 925, 1048
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 1030
BstNI	CCWGG	4 cut(s)	125, 200, 483, 503
BstNSI	RCATGY	2 cut(s)	719, 790
BstSCI	CCNGG	5 cut(s)	123, 198, 481, 501, 537
BstSFI	CTRYAG	1 cut(s)	1068
BstUI	CGCG	1 cut(s)	609
BstV1I	GCAGC	2 cut(s)	445, 838
BstV2I	GAAGAC	1 cut(s)	893
BstX2I	RGATCY	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	868
BstYI	RGATCY	1 cut(s)	76
Bsu36I	CCTNAGG	1 cut(s)	1026
BsuRI	GGCC	3 cut(s)	588, 669, 1033
BtgZI	GCGATG	1 cut(s)	590
BtsCI	GGATG	4 cut(s)	565, 578, 738, 999
BtsIMutI	CAGTG	3 cut(s)	307, 542, 868
Cac8I	GCNNGC	3 cut(s)	701, 749, 1035
CciI	TCATGA	1 cut(s)	976
CfoI	GCGC	3 cut(s)	851, 1024, 1039
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	6 cut(s)	29, 38, 59, 308, 1031, 1064
CsiI	ACCWGGT	1 cut(s)	123
Csp6I	GTAC	4 cut(s)	128, 217, 416, 425
CviAII	CATG	5 cut(s)	81, 716, 787, 977, 1076
CviQI	GTAC	4 cut(s)	128, 217, 416, 425
DdeI	CTNAG	2 cut(s)	819, 1026
DpnI	GATC	4 cut(s)	78, 594, 927, 1050
DpnII	GATC	4 cut(s)	76, 592, 925, 1048
DraIII	CACNNNGTG	3 cut(s)	350, 395, 512
EciI	GGCGGA	1 cut(s)	887
Eco130I	CCWWGG	1 cut(s)	647
Eco31I	GGTCTC	3 cut(s)	12, 339, 361
Eco47I	GGWCC	5 cut(s)	29, 38, 59, 308, 1064
Eco57I	CTGAAG	2 cut(s)	231, 822
Eco81I	CCTNAGG	1 cut(s)	1026
EcoO109I	RGGNCCY	3 cut(s)	29, 59, 1064
EcoRI	GAATTC	1 cut(s)	49
EcoRII	CCWGG	4 cut(s)	123, 198, 481, 501
EcoT14I	CCWWGG	1 cut(s)	647
ErhI	CCWWGG	1 cut(s)	647
FaeI	CATG	5 cut(s)	84, 719, 790, 980, 1079
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	5 cut(s)	80, 715, 786, 976, 1075
FauI	CCCGC	1 cut(s)	752
FauNDI	CATATG	1 cut(s)	705
FblI	GTMKAC	2 cut(s)	12, 271
Fnu4HI	GCNGC	2 cut(s)	459, 852
FokI	GGATG	4 cut(s)	572, 585, 745, 1006
Fsp4HI	GCNGC	2 cut(s)	459, 852
FspBI	CTAG	1 cut(s)	891
GlaI	GCGC	3 cut(s)	850, 1023, 1038
GluI	GCNGC	2 cut(s)	459, 852
HaeII	RGCGCY	1 cut(s)	1040
HaeIII	GGCC	3 cut(s)	588, 669, 1033
HhaI	GCGC	3 cut(s)	851, 1024, 1039
Hin1II	CATG	5 cut(s)	84, 719, 790, 980, 1079
Hin6I	GCGC	3 cut(s)	849, 1022, 1037
HinP1I	GCGC	3 cut(s)	849, 1022, 1037
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	2 cut(s)	70, 239
HpaI	GTTAAC	1 cut(s)	298
HphI	GGTGA	2 cut(s)	107, 248
Hpy166II	GTNNAC	4 cut(s)	13, 272, 298, 1012
Hpy188I	TCNGA	2 cut(s)	930, 1093
Hpy188III	TCNNGA	4 cut(s)	67, 74, 721, 977
Hpy8I	GTNNAC	4 cut(s)	13, 272, 298, 1012
HpyAV	CCTTC	2 cut(s)	550, 840
HpyCH4III	ACNGT	2 cut(s)	302, 1059
HpyCH4IV	ACGT	1 cut(s)	1108
HpyCH4V	TGCA	3 cut(s)	7, 604, 948
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 1030
HpyF3I	CTNAG	2 cut(s)	819, 1026
HpySE526I	ACGT	1 cut(s)	1108
Hsp92II	CATG	5 cut(s)	84, 719, 790, 980, 1079
HspAI	GCGC	3 cut(s)	849, 1022, 1037
KpnI	GGTACC	1 cut(s)	131
KspAI	GTTAAC	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	76, 592, 925, 1048
LmnI	GCTCC	1 cut(s)	437
Lsp1109I	GCAGC	2 cut(s)	445, 838
LweI	GCATC	4 cut(s)	484, 550, 613, 943
MabI	ACCWGGT	1 cut(s)	123
MaeI	CTAG	1 cut(s)	891
MaeII	ACGT	1 cut(s)	1108
MaeIII	GTNAC	4 cut(s)	286, 764, 796, 1053
MalI	GATC	4 cut(s)	78, 594, 927, 1050
MboI	GATC	4 cut(s)	76, 592, 925, 1048
MboII	GAAGA	7 cut(s)	58, 152, 538, 698, 736, 898, 911
MflI	RGATCY	1 cut(s)	76
MluCI	AATT	4 cut(s)	49, 155, 220, 409
MmeI	TCCRAC	1 cut(s)	1071
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	280
MspR9I	CCNGG	5 cut(s)	125, 200, 483, 503, 539
Mva1269I	GAATGC	1 cut(s)	1024
MvaI	CCWGG	4 cut(s)	125, 200, 483, 503
MvnI	CGCG	1 cut(s)	609
MwoI	GCNNNNNNNGC	2 cut(s)	503, 1030
NciI	CCSGG	1 cut(s)	539
NdeI	CATATG	1 cut(s)	705
NdeII	GATC	4 cut(s)	76, 592, 925, 1048
NlaIII	CATG	5 cut(s)	84, 719, 790, 980, 1079
NlaIV	GGNNCC	6 cut(s)	60, 122, 129, 204, 1032, 1065
NmuCI	GTSAC	1 cut(s)	1053
NspI	RCATGY	2 cut(s)	719, 790
PagI	TCATGA	1 cut(s)	976
PctI	GAATGC	1 cut(s)	1024
PfeI	GAWTC	2 cut(s)	70, 239
PflMI	CCANNNNNTGG	2 cut(s)	212, 1086
PkrI	GCNGC	2 cut(s)	460, 853
PpuMI	RGGWCCY	3 cut(s)	29, 59, 1064
Psp5II	RGGWCCY	3 cut(s)	29, 59, 1064
Psp6I	CCWGG	4 cut(s)	123, 198, 481, 501
PspGI	CCWGG	4 cut(s)	123, 198, 481, 501
PspN4I	GGNNCC	6 cut(s)	60, 122, 129, 204, 1032, 1065
PspPI	GGNCC	6 cut(s)	29, 38, 59, 308, 1031, 1064
PspPPI	RGGWCCY	3 cut(s)	29, 59, 1064
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	4 cut(s)	129, 218, 417, 426
RsaNI	GTAC	4 cut(s)	128, 217, 416, 425
RseI	CAYNNNNRTG	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	2 cut(s)	459, 852
Sau3AI	GATC	4 cut(s)	76, 592, 925, 1048
Sau96I	GGNCC	6 cut(s)	29, 38, 59, 308, 1031, 1064
ScrFI	CCNGG	5 cut(s)	125, 200, 483, 503, 539
SexAI	ACCWGGT	1 cut(s)	123
SfaNI	GCATC	4 cut(s)	484, 550, 613, 943
SfcI	CTRYAG	1 cut(s)	1068
SinI	GGWCC	5 cut(s)	29, 38, 59, 308, 1064
SmiMI	CAYNNNNRTG	1 cut(s)	280
SpeI	ACTAGT	1 cut(s)	890
Sse9I	AATT	4 cut(s)	49, 155, 220, 409
SsiI	CCGC	5 cut(s)	131, 745, 872, 917, 1114
SspMI	CTAG	1 cut(s)	891
StyD4I	CCNGG	5 cut(s)	123, 198, 481, 501, 537
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	2 cut(s)	302, 1059
TaiI	ACGT	1 cut(s)	1111
TaqI	TCGA	2 cut(s)	169, 433
TaqII	GACCGA	2 cut(s)	128, 1041
TasI	AATT	4 cut(s)	49, 155, 220, 409
TfiI	GAWTC	2 cut(s)	70, 239
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	3 cut(s)	307, 549, 868
TseFI	GTSAC	1 cut(s)	1053
TseI	GCWGC	2 cut(s)	458, 851
Tsp45I	GTSAC	1 cut(s)	1053
TspDTI	ATGAA	3 cut(s)	59, 510, 912
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	3 cut(s)	307, 549, 868
Van91I	CCANNNNNTGG	2 cut(s)	212, 1086
VpaK11BI	GGWCC	5 cut(s)	29, 38, 59, 308, 1064
XapI	RAATTY	2 cut(s)	49, 409
XceI	RCATGY	2 cut(s)	719, 790
XmiI	GTMKAC	2 cut(s)	12, 271
XspI	CTAG	1 cut(s)	891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.