Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004283.1

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

128341 .. 128760

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atggattggcatgtcaagaagaaccggatgtccaaaacccgcaagcagaagccctctcgtaacttttatgcaagtacaagcatgtggattgttacagatgtagaggctgaggctgaggcattaccttctggtgtagttttgtgcgctgctgacaccagtggcgtggcggaaaagaaaaggaagactagtgatgaagaaatggttgttcctgcggacgaggatcgaagtaaatgtgccttatgcacagatgcttttattgagttttatagtcatgagaaagatgagtggatgtataaaggtgctgtttacttgaatgcgcctcaggggccagcgccggagatggatcggtcacagttgggtcctatagtccatgccaaatgctggtcggagggtagtaggaaacgtctgcggaggagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

139

Amino Acids

15.77

Weight (kDa)

8.33

Isoelectric Point (pI)

67.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_PCFS4	PF23228	64 - 130	5.1e-28	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	381
AciI	CCGC	4 cut(s)	40, 167, 212, 409
AclWI	GGATC	2 cut(s)	228, 351
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgsI	TTSAA	1 cut(s)	313
AhlI	ACTAGT	1 cut(s)	185
AloI	GAACNNNNNNTCC	2 cut(s)	14, 46
AlwI	GGATC	2 cut(s)	228, 351
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	1 cut(s)	146
AspLEI	GCGC	3 cut(s)	146, 319, 334
AspS9I	GGNCC	2 cut(s)	326, 359
AvaII	GGWCC	1 cut(s)	359
AxyI	CCTNAGG	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	188
BbvCI	CCTCAGC	2 cut(s)	108, 114
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	1 cut(s)	334
BcuI	ACTAGT	1 cut(s)	185
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	363
BfoI	RGCGCY	1 cut(s)	335
BglI	GCCNNNNNGGC	1 cut(s)	325
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	326, 359
BmiI	GGNNCC	2 cut(s)	327, 360
BmsI	GCATC	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	188
Bpu10I	CCTNAGC	2 cut(s)	108, 114
BsaWI	WCCGGW	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse1I	ACTGG	1 cut(s)	156
Bse21I	CCTNAGG	1 cut(s)	321
BseGI	GGATG	2 cut(s)	33, 294
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMII	CTCAG	3 cut(s)	99, 105, 335
BseNI	ACTGG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	133
BshFI	GGCC	1 cut(s)	328
BsiSI	CCGG	2 cut(s)	25, 335
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	220, 343
BspACI	CCGC	4 cut(s)	40, 167, 212, 409
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	3 cut(s)	100, 106, 334
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	327, 360
BspPI	GGATC	2 cut(s)	228, 351
BsrI	ACTGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	220, 343
Bst4CI	ACNGT	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	44, 330
BstDEI	CTNAG	3 cut(s)	108, 114, 321
BstF5I	GGATG	2 cut(s)	33, 294
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	3 cut(s)	146, 319, 334
BstKTI	GATC	2 cut(s)	223, 346
BstMBI	GATC	2 cut(s)	220, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNSI	RCATGY	2 cut(s)	14, 85
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	188
BstXI	CCANNNNNNTGG	1 cut(s)	163
Bsu36I	CCTNAGG	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	328
BtsCI	GGATG	2 cut(s)	33, 294
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	2 cut(s)	44, 330
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	3 cut(s)	146, 319, 334
Cfr13I	GGNCC	2 cut(s)	326, 359
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	4 cut(s)	11, 82, 272, 371
CviJI	RGCY	4 cut(s)	52, 107, 113, 328
CviKI_1	RGCY	4 cut(s)	52, 107, 113, 328
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	3 cut(s)	108, 114, 321
DpnI	GATC	2 cut(s)	222, 345
DpnII	GATC	2 cut(s)	220, 343
EciI	GGCGGA	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	359
FaeI	CATG	4 cut(s)	14, 85, 275, 374
FaiI	YATR	9 cut(s)	12, 69, 83, 241, 267, 273, 294, 365, 372
FatI	CATG	4 cut(s)	10, 81, 271, 370
FauI	CCCGC	1 cut(s)	47
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	2 cut(s)	40, 301
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	3 cut(s)	145, 318, 333
GluI	GCNGC	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	328
HapII	CCGG	2 cut(s)	25, 335
HhaI	GCGC	3 cut(s)	146, 319, 334
Hin1II	CATG	4 cut(s)	14, 85, 275, 374
Hin6I	GCGC	3 cut(s)	144, 317, 332
HinP1I	GCGC	3 cut(s)	144, 317, 332
HpaII	CCGG	2 cut(s)	25, 335
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	2 cut(s)	16, 272
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	2 cut(s)	71, 243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	3 cut(s)	108, 114, 321
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	4 cut(s)	14, 85, 275, 374
HspAI	GCGC	3 cut(s)	144, 317, 332
Kzo9I	GATC	2 cut(s)	220, 343
LpnPI	CCDG	8 cut(s)	38, 114, 169, 222, 308, 342, 348, 367
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	3 cut(s)	59, 91, 348
MalI	GATC	2 cut(s)	222, 345
MboI	GATC	2 cut(s)	220, 343
MboII	GAAGA	3 cut(s)	31, 193, 206
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	8 cut(s)	64, 97, 103, 109, 211, 330, 382, 405
MspI	CCGG	2 cut(s)	25, 335
Mva1269I	GAATGC	1 cut(s)	319
MwoI	GCNNNNNNNGC	1 cut(s)	325
NdeII	GATC	2 cut(s)	220, 343
NlaIII	CATG	4 cut(s)	14, 85, 275, 374
NlaIV	GGNNCC	2 cut(s)	327, 360
NmuCI	GTSAC	1 cut(s)	348
NspI	RCATGY	2 cut(s)	14, 85
PagI	TCATGA	1 cut(s)	271
PctI	GAATGC	1 cut(s)	319
PflMI	CCANNNNNTGG	1 cut(s)	381
PkrI	GCNGC	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	327, 360
PspPI	GGNCC	2 cut(s)	326, 359
PspPPI	RGGWCCY	1 cut(s)	359
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	220, 343
Sau96I	GGNCC	2 cut(s)	326, 359
SetI	ASST	3 cut(s)	127, 301, 406
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	1 cut(s)	359
SpeI	ACTAGT	1 cut(s)	185
SsiI	CCGC	4 cut(s)	40, 167, 212, 409
SspMI	CTAG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	354
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	1 cut(s)	223
TaqII	GACCGA	1 cut(s)	336
TatI	WGTACW	1 cut(s)	74
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	348
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	163
Van91I	CCANNNNNTGG	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	359
XceI	RCATGY	2 cut(s)	14, 85
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.