Rmu_sc0004368.1_g000005

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004368.1
OG0002089
Physical Location & Seq
Reverse (-)
26915 .. 28939
2025 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 864 bp
atggaagcttcttcaggtttaacgacaacttcggaatctatcaaccacagtgatgatggcgaaaagtatgctaatggtgtcaactgggatgaactggcatttggaataactccaactgattcgatgtataccatgaactgctccgatgaaaataacttttcacaaggacatctcattccctatggaaatattgagctttgtccatctgctggaattttgaattatggacaggtagaagatggtcgtattatgctattccgaccagaagaaaatgctctaagaatgaagatgggtgcagagaggatgtgcatgccatctccatccgttgagcaatttgttgatgctgtgaagcaaactgtcctcgccaataagcgttgggtaccacctccaggaaaaggatcactatacgtcaggcctttgctcatgggaagtggatctgttcttaatgttgggccggcaccagagtacacactcctgatatatgcgtctccggttggtaattcttctccagtaggtaattaccacaagggaaggccatccctgaacttgtatgttgaggataaactccctagagctactcccggtggaactggagggataaagtctatcaccaattacgcacccgtttatcaggcacaaaagcaagcaagagccaaaggattctctgatgttttatacctagattctgtaactggtaaaaacattgaggagatttcagctgctaacattttcattgtgaaggataatgttgtatccactccagcattagtacatggaactattcttcccggagttactcgtaaaagcataatggagattgcccttcatttaggttaccaggtgaacatcatttcctctctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

287

Amino Acids

31.0

Weight (kDa)

5.77

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 77 - 282 2.6e-21 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 379
AccB1I GGYRCC 2 cut(s) 379, 457
AccB7I CCANNNNNTGG 1 cut(s) 209
AccI GTMKAC 1 cut(s) 128
AclWI GGATC 2 cut(s) 406, 442
AcsI RAATTY 1 cut(s) 213
AfaI GTAC 3 cut(s) 381, 467, 771
AfiI CCNNNNNNNGG 3 cut(s) 209, 389, 395
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 2 cut(s) 388, 837
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AloI GAACNNNNNNTCC 3 cut(s) 769, 801, 836
AluBI AGCT 4 cut(s) 8, 196, 575, 719
AluI AGCT 4 cut(s) 8, 196, 575, 719
Alw26I GTCTC 1 cut(s) 492
AlwI GGATC 2 cut(s) 406, 442
AoxI GGCC 3 cut(s) 413, 452, 533
ApeKI GCWGC 1 cut(s) 719
ApoI RAATTY 1 cut(s) 213
Asp718I GGTACC 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 452
AsuC2I CCSGG 2 cut(s) 582, 789
AsuHPI GGTGA 2 cut(s) 601, 853
BanI GGYRCC 2 cut(s) 379, 457
BbvI GCAGC 1 cut(s) 706
BccI CCATC 7 cut(s) 50, 211, 233, 283, 322, 328, 544
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BciT130I CCWGG 2 cut(s) 390, 839
BciVI GTATCC 1 cut(s) 763
BcnI CCSGG 2 cut(s) 582, 789
BcoDI GTCTC 1 cut(s) 492
BfaI CTAG 2 cut(s) 570, 680
BfuI GTATCC 1 cut(s) 763
BisI GCNGC 1 cut(s) 720
BlsI GCNGC 1 cut(s) 721
Bme1390I CCNGG 4 cut(s) 390, 582, 789, 839
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 2 cut(s) 381, 459
BmrFI CCNGG 4 cut(s) 390, 582, 789, 839
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 94
BpmI CTGGAG 4 cut(s) 372, 492, 612, 744
BpuMI CCSGG 2 cut(s) 582, 789
BsaWI WCCGGW 1 cut(s) 490
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 389, 395
Bse118I RCCGGY 1 cut(s) 454
Bse1I ACTGG 5 cut(s) 89, 99, 509, 595, 697
BseBI CCWGG 2 cut(s) 390, 839
BseGI GGATG 4 cut(s) 94, 309, 320, 536
BseLI CCNNNNNNNGG 3 cut(s) 209, 389, 395
BseNI ACTGG 5 cut(s) 89, 99, 509, 595, 697
BseRI GAGGAG 1 cut(s) 722
BseXI GCAGC 1 cut(s) 706
BsgI GTGCAG 1 cut(s) 315
BshFI GGCC 3 cut(s) 415, 454, 535
BshNI GGYRCC 2 cut(s) 379, 457
BsiSI CCGG 4 cut(s) 455, 491, 582, 789
BslI CCNNNNNNNGG 3 cut(s) 209, 389, 395
BsmAI GTCTC 1 cut(s) 492
BsmBI CGTCTC 1 cut(s) 492
BsnI GGCC 3 cut(s) 415, 454, 535
Bsp143I GATC 2 cut(s) 398, 434
BspANI GGCC 3 cut(s) 415, 454, 535
BspLI GGNNCC 2 cut(s) 381, 459
BspPI GGATC 2 cut(s) 406, 442
BspT107I GGYRCC 2 cut(s) 379, 457
BsrFI RCCGGY 1 cut(s) 454
BsrI ACTGG 5 cut(s) 89, 99, 509, 595, 697
BssAI RCCGGY 1 cut(s) 454
BssMI GATC 2 cut(s) 398, 434
BssNAI GTATAC 1 cut(s) 129
Bst1107I GTATAC 1 cut(s) 129
Bst2UI CCWGG 2 cut(s) 390, 839
Bst4CI ACNGT 2 cut(s) 50, 358
BstC8I GCNNGC 3 cut(s) 311, 456, 645
BstDEI CTNAG 1 cut(s) 278
BstEII GGTNACC 1 cut(s) 833
BstF5I GGATG 4 cut(s) 94, 309, 320, 536
BstKTI GATC 2 cut(s) 401, 437
BstMAI GTCTC 1 cut(s) 492
BstMBI GATC 2 cut(s) 398, 434
BstNI CCWGG 2 cut(s) 390, 839
BstNSI RCATGY 1 cut(s) 313
BstPI GGTNACC 1 cut(s) 833
BstSCI CCNGG 4 cut(s) 388, 580, 787, 837
BstV1I GCAGC 1 cut(s) 706
BstX2I RGATCY 1 cut(s) 434
BstYI RGATCY 1 cut(s) 434
BstZ17I GTATAC 1 cut(s) 129
BsuI GTATCC 1 cut(s) 763
BsuRI GGCC 3 cut(s) 415, 454, 535
BtsCI GGATG 4 cut(s) 94, 309, 320, 536
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 3 cut(s) 311, 456, 645
Cfr10I RCCGGY 1 cut(s) 454
Cfr13I GGNCC 1 cut(s) 452
CseI GACGC 1 cut(s) 474
CsiI ACCWGGT 1 cut(s) 837
Csp6I GTAC 3 cut(s) 380, 466, 770
CviAII CATG 4 cut(s) 133, 310, 424, 773
CviJI RGCY 8 cut(s) 8, 196, 415, 454, 535, 575, 653, 719
CviKI_1 RGCY 8 cut(s) 8, 196, 415, 454, 535, 575, 653, 719
CviQI GTAC 3 cut(s) 380, 466, 770
DdeI CTNAG 1 cut(s) 278
DpnI GATC 2 cut(s) 400, 436
DpnII GATC 2 cut(s) 398, 434
Eco147I AGGCCT 1 cut(s) 415
Eco91I GGTNACC 1 cut(s) 833
EcoO65I GGTNACC 1 cut(s) 833
EcoRII CCWGG 2 cut(s) 388, 837
Esp3I CGTCTC 1 cut(s) 492
FaeI CATG 4 cut(s) 136, 313, 427, 776
FatI CATG 4 cut(s) 132, 309, 423, 772
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 720
FokI GGATG 4 cut(s) 101, 307, 316, 523
Fsp4HI GCNGC 1 cut(s) 720
FspBI CTAG 2 cut(s) 570, 680
GluI GCNGC 1 cut(s) 720
GsuI CTGGAG 4 cut(s) 372, 492, 612, 744
HaeIII GGCC 3 cut(s) 415, 454, 535
HapII CCGG 4 cut(s) 455, 491, 582, 789
HgaI GACGC 1 cut(s) 474
Hin1II CATG 4 cut(s) 136, 313, 427, 776
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 4 cut(s) 35, 119, 660, 683
HpaII CCGG 4 cut(s) 455, 491, 582, 789
HphI GGTGA 2 cut(s) 601, 853
Hpy166II GTNNAC 4 cut(s) 82, 129, 468, 844
Hpy188I TCNGA 4 cut(s) 34, 145, 260, 667
Hpy188III TCNNGA 1 cut(s) 475
Hpy8I GTNNAC 4 cut(s) 82, 129, 468, 844
HpyAV CCTTC 3 cut(s) 525, 733, 833
HpyCH4III ACNGT 2 cut(s) 50, 358
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 2 cut(s) 296, 309
HpyF3I CTNAG 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 4 cut(s) 136, 313, 427, 776
KpnI GGTACC 1 cut(s) 383
KroI GCCGGC 1 cut(s) 454
KroNI GCCGGC 1 cut(s) 456
Kzo9I GATC 2 cut(s) 398, 434
LmnI GCTCC 1 cut(s) 146
Lsp1109I GCAGC 1 cut(s) 706
LweI GCATC 1 cut(s) 331
MabI ACCWGGT 1 cut(s) 837
MaeI CTAG 2 cut(s) 570, 680
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 3 cut(s) 688, 793, 833
MalI GATC 2 cut(s) 400, 436
MboI GATC 2 cut(s) 398, 434
MboII GAAGA 6 cut(s) 3, 248, 278, 298, 495, 776
MflI RGATCY 1 cut(s) 434
MluCI AATT 6 cut(s) 213, 220, 332, 499, 517, 613
MmeI TCCRAC 2 cut(s) 137, 283
MnlI CCTC 6 cut(s) 294, 371, 396, 550, 587, 700
MroNI GCCGGC 1 cut(s) 454
MseI TTAA 2 cut(s) 20, 444
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 4 cut(s) 455, 491, 582, 789
MspR9I CCNGG 4 cut(s) 390, 582, 789, 839
MvaI CCWGG 2 cut(s) 390, 839
NaeI GCCGGC 1 cut(s) 456
NciI CCSGG 2 cut(s) 582, 789
NdeII GATC 2 cut(s) 398, 434
NgoMIV GCCGGC 1 cut(s) 454
NlaIII CATG 4 cut(s) 136, 313, 427, 776
NlaIV GGNNCC 2 cut(s) 381, 459
NspI RCATGY 1 cut(s) 313
PaeI GCATGC 1 cut(s) 313
PceI AGGCCT 1 cut(s) 415
PdiI GCCGGC 1 cut(s) 456
PfeI GAWTC 4 cut(s) 35, 119, 660, 683
PflMI CCANNNNNTGG 1 cut(s) 209
PfoI TCCNGGA 2 cut(s) 388, 787
PkrI GCNGC 1 cut(s) 721
Psp6I CCWGG 2 cut(s) 388, 837
PspEI GGTNACC 1 cut(s) 833
PspGI CCWGG 2 cut(s) 388, 837
PspN4I GGNNCC 2 cut(s) 381, 459
PspPI GGNCC 1 cut(s) 452
PsuI RGATCY 1 cut(s) 434
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 3 cut(s) 381, 467, 771
RsaNI GTAC 3 cut(s) 380, 466, 770
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 2 cut(s) 20, 444
SatI GCNGC 1 cut(s) 720
Sau3AI GATC 2 cut(s) 398, 434
Sau96I GGNCC 1 cut(s) 452
ScrFI CCNGG 4 cut(s) 390, 582, 789, 839
SexAI ACCWGGT 1 cut(s) 837
SfaNI GCATC 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 51
SphI GCATGC 1 cut(s) 313
Sse9I AATT 6 cut(s) 213, 220, 332, 499, 517, 613
SseBI AGGCCT 1 cut(s) 415
SspI AATATT 1 cut(s) 190
SspMI CTAG 2 cut(s) 570, 680
StuI AGGCCT 1 cut(s) 415
StyD4I CCNGG 4 cut(s) 388, 580, 787, 837
TaaI ACNGT 2 cut(s) 50, 358
TaiI ACGT 1 cut(s) 411
TaqI TCGA 1 cut(s) 122
TasI AATT 6 cut(s) 213, 220, 332, 499, 517, 613
TatI WGTACW 2 cut(s) 465, 769
TfiI GAWTC 4 cut(s) 35, 119, 660, 683
Tru1I TTAA 2 cut(s) 20, 444
Tru9I TTAA 2 cut(s) 20, 444
TscAI CASTG 1 cut(s) 55
TseI GCWGC 1 cut(s) 719
TspDTI ATGAA 6 cut(s) 105, 149, 162, 299, 721, 815
TspGWI ACGGA 1 cut(s) 313
TspRI CASTG 1 cut(s) 55
Van91I CCANNNNNTGG 1 cut(s) 209
XapI RAATTY 1 cut(s) 213
XceI RCATGY 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 128
XspI CTAG 2 cut(s) 570, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.