Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004520.1

Orthogroup ID

OG0002183

Physical Location & Seq

Genomic Coordinates Forward (+)

24496 .. 25032

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgtcaaccatcgtcccacccgtcctcccaatctccaccacctctgtcgccgccgccggatccattgagtcccaggcctcccagcctcggatcgccaccctggccttccgcgccttcatcaaccacatcactgacaccgtccgcaccggcctctcgcagcgccgcccctgggccaagcttgccgaccgctccgccttcgccaagcctggatccttctccgacgccaccctccgcgtcttcaagaactactcctactttcgcatcaactacctcgccgtcgtcgccctcttcacccaccccttctccctcggcctcctcgccgcctggctcttcctctacctcttccgctcctccgatcagcccctcgttatctgcggccagactttctccgacacccaaaccctaatgggcctcatcggcctcagcgtcttcgtcgtcttcctcacctccgtcggatccgtcctcatctccgctcccatggtcggagttgccgtcgtactccatattcaccatgatcaattaacctggatagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

178

Amino Acids

19.43

Weight (kDa)

9.89

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	50 - 167	3.1e-30	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38360 AT4G00005 AT5G01640
fragaria_vesca	FvH4_3g04281 FvH4_6g10630
malus_domestica	MD04G1166500.v1.1
prunus_persica	Prupe.6G284700_v2.0.a1
pyrus_communis	pycom04g14790 pycom12g16960
rosa_chinensis	RchiOBHm_Chr1g0318921 RchiOBHm_Chr2g0158611 RchiOBHm_Chr2g0165361 RchiOBHm_Chr2g0174561 RchiOBHm_Chr3g0461651 RchiOBHm_Chr5g0045301
rosa_laevigata	RLG00000024910
rosa_multiflora	Rmu_sc0003578.1_g000005 Rmu_sc0004520.1_g000006 Rmu_sc0010437.1_g000003 Rmu_sc0012406.1_g000008 Rmu_sc0033441.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036960 Rroxscaffold_1G00048160 Rroxscaffold_6G00418070 Rroxscaffold_7G00216470
rosa_rugosa	Rorug01G0391100 Rorug01G0391200 Rorug03G0052600 Rorug05G0383700 Rorug06G0135300 Rorug06G0135400 Rorug06G0135500 Rorug06G0135600 Rorug07G0123000
rosa_samantha	Rh1AG037100 Rh1BG158700 Rh1DG189600 Rh2CG632900 Rh3AG110900 Rh3BG113900 Rh3CG115900 Rh3DG115800
rosa_wichuraiana	Rw6G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	189, 348, 473
AccII	CGCG	2 cut(s)	111, 234
AclWI	GGATC	7 cut(s)	54, 67, 98, 204, 217, 450, 463
AcoI	YGGCCR	1 cut(s)	376
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	498
AfiI	CCNNNNNNNGG	3 cut(s)	87, 169, 482
AgsI	TTSAA	1 cut(s)	241
AjnI	CCWGG	6 cut(s)	72, 99, 167, 205, 323, 524
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
AlwI	GGATC	7 cut(s)	54, 67, 98, 204, 217, 450, 463
AoxI	GGCC	8 cut(s)	75, 102, 148, 171, 310, 376, 409, 418
ApeKI	GCWGC	1 cut(s)	157
AspLEI	GCGC	2 cut(s)	113, 162
AspS9I	GGNCC	2 cut(s)	171, 409
AsuHPI	GGTGA	3 cut(s)	283, 436, 500
BamHI	GGATCC	3 cut(s)	59, 209, 455
BbsI	GAAGAC	3 cut(s)	229, 421, 430
BbvCI	CCTCAGC	1 cut(s)	422
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	2 cut(s)	260, 476
BciT130I	CCWGG	6 cut(s)	74, 101, 169, 207, 325, 526
BclI	TGATCA	1 cut(s)	514
BfoI	RGCGCY	1 cut(s)	163
BglI	GCCNNNNNGGC	2 cut(s)	101, 417
BisI	GCNGC	6 cut(s)	51, 54, 158, 163, 321, 376
BlsI	GCNGC	6 cut(s)	52, 55, 159, 164, 322, 377
Bme1390I	CCNGG	6 cut(s)	74, 101, 169, 207, 325, 526
BmgT120I	GGNCC	2 cut(s)	171, 409
BmiI	GGNNCC	3 cut(s)	61, 211, 457
BmrFI	CCNGG	6 cut(s)	74, 101, 169, 207, 325, 526
BmsI	GCATC	1 cut(s)	270
BpiI	GAAGAC	3 cut(s)	229, 421, 430
Bpu10I	CCTNAGC	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	7 cut(s)	72, 86, 99, 167, 168, 307, 477
BsaXI	ACNNNNNCTCC	6 cut(s)	9, 39, 287, 317, 477, 507
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 169, 482
Bse118I	RCCGGY	1 cut(s)	146
BseBI	CCWGG	6 cut(s)	74, 101, 169, 207, 325, 526
BseDI	CCNNGG	7 cut(s)	72, 86, 99, 167, 168, 307, 477
BseLI	CCNNNNNNNGG	3 cut(s)	87, 169, 482
BseMII	CTCAG	1 cut(s)	436
BseRI	GAGGAG	2 cut(s)	305, 340
BseXI	GCAGC	1 cut(s)	169
BseYI	CCCAGC	1 cut(s)	81
Bsh1236I	CGCG	2 cut(s)	111, 234
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	8 cut(s)	77, 104, 150, 173, 312, 378, 411, 420
BsiEI	CGRYCG	1 cut(s)	187
BsiSI	CCGG	2 cut(s)	57, 147
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	3 cut(s)	87, 169, 482
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	8 cut(s)	77, 104, 150, 173, 312, 378, 411, 420
Bsp143I	GATC	6 cut(s)	59, 90, 209, 355, 455, 514
Bsp19I	CCATGG	1 cut(s)	477
BspANI	GGCC	8 cut(s)	77, 104, 150, 173, 312, 378, 411, 420
BspCNI	CTCAG	1 cut(s)	435
BspFNI	CGCG	2 cut(s)	111, 234
BspLI	GGNNCC	3 cut(s)	61, 211, 457
BspPI	GGATC	7 cut(s)	54, 67, 98, 204, 217, 450, 463
BspQI	GCTCTTC	1 cut(s)	335
BsrBI	CCGCTC	3 cut(s)	189, 348, 473
BsrFI	RCCGGY	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	7 cut(s)	72, 86, 99, 167, 168, 307, 477
BssMI	GATC	6 cut(s)	59, 90, 209, 355, 455, 514
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	477
Bst2UI	CCWGG	6 cut(s)	74, 101, 169, 207, 325, 526
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	3 cut(s)	293, 335, 347
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	422
BstDSI	CCRYGG	1 cut(s)	477
BstFNI	CGCG	2 cut(s)	111, 234
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	113, 162
BstKTI	GATC	6 cut(s)	62, 93, 212, 358, 458, 517
BstMBI	GATC	6 cut(s)	59, 90, 209, 355, 455, 514
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 110, 179, 281, 417
BstNI	CCWGG	6 cut(s)	74, 101, 169, 207, 325, 526
BstSCI	CCNGG	6 cut(s)	72, 99, 167, 205, 323, 524
BstUI	CGCG	2 cut(s)	111, 234
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	3 cut(s)	229, 421, 430
BstX2I	RGATCY	3 cut(s)	59, 209, 455
BstYI	RGATCY	3 cut(s)	59, 209, 455
BsuRI	GGCC	8 cut(s)	77, 104, 150, 173, 312, 378, 411, 420
BtgI	CCRYGG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	2 cut(s)	113, 162
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	171, 409
CseI	GACGC	3 cut(s)	223, 230, 415
Csp6I	GTAC	1 cut(s)	497
CviAII	CATG	2 cut(s)	478, 512
CviQI	GTAC	1 cut(s)	497
DdeI	CTNAG	1 cut(s)	422
DpnI	GATC	6 cut(s)	61, 92, 211, 357, 457, 516
DpnII	GATC	6 cut(s)	59, 90, 209, 355, 455, 514
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	3 cut(s)	293, 335, 347
EarI	CTCTTC	3 cut(s)	293, 335, 347
EciI	GGCGGA	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	477
Eco147I	AGGCCT	1 cut(s)	77
EcoRII	CCWGG	6 cut(s)	72, 99, 167, 205, 323, 524
EcoT14I	CCWWGG	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	2 cut(s)	481, 515
FaiI	YATR	3 cut(s)	479, 504, 513
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	2 cut(s)	477, 511
FbaI	TGATCA	1 cut(s)	514
Fnu4HI	GCNGC	6 cut(s)	51, 54, 158, 163, 321, 376
Fsp4HI	GCNGC	6 cut(s)	51, 54, 158, 163, 321, 376
GlaI	GCGC	2 cut(s)	112, 161
GluI	GCNGC	6 cut(s)	51, 54, 158, 163, 321, 376
GsaI	CCCAGC	1 cut(s)	85
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	8 cut(s)	77, 104, 150, 173, 312, 378, 411, 420
HapII	CCGG	2 cut(s)	57, 147
HgaI	GACGC	3 cut(s)	223, 230, 415
HhaI	GCGC	2 cut(s)	113, 162
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	481, 515
Hin6I	GCGC	2 cut(s)	111, 160
HinP1I	GCGC	2 cut(s)	111, 160
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	2 cut(s)	57, 147
HphI	GGTGA	3 cut(s)	283, 436, 500
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	7 cut(s)	90, 220, 355, 391, 455, 485, 536
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	6 cut(s)	224, 281, 284, 437, 455, 497
HpyAV	CCTTC	5 cut(s)	115, 124, 205, 223, 310
HpyCH4III	ACNGT	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 110, 179, 281, 417
HpyF3I	CTNAG	1 cut(s)	422
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	481, 515
HspAI	GCGC	2 cut(s)	111, 160
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	6 cut(s)	59, 90, 209, 355, 455, 514
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	3 cut(s)	194, 353, 478
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	270
MalI	GATC	6 cut(s)	61, 92, 211, 357, 457, 516
MbiI	CCGCTC	3 cut(s)	189, 348, 473
MboI	GATC	6 cut(s)	59, 90, 209, 355, 455, 514
MboII	GAAGA	6 cut(s)	229, 280, 322, 334, 421, 430
MflI	RGATCY	3 cut(s)	59, 209, 455
MluCI	AATT	1 cut(s)	518
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	4 cut(s)	243, 414, 433, 463
MseI	TTAA	1 cut(s)	521
MspI	CCGG	2 cut(s)	57, 147
MspR9I	CCNGG	6 cut(s)	74, 101, 169, 207, 325, 526
MvaI	CCWGG	6 cut(s)	74, 101, 169, 207, 325, 526
MvnI	CGCG	2 cut(s)	111, 234
MwoI	GCNNNNNNNGC	5 cut(s)	101, 110, 179, 281, 417
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	6 cut(s)	59, 90, 209, 355, 455, 514
NlaIII	CATG	2 cut(s)	481, 515
NlaIV	GGNNCC	3 cut(s)	61, 211, 457
NmeAIII	GCCGAG	1 cut(s)	288
PasI	CCCWGGG	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	3 cut(s)	18, 423, 489
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	6 cut(s)	52, 55, 159, 164, 322, 377
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	6 cut(s)	72, 99, 167, 205, 323, 524
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	6 cut(s)	72, 99, 167, 205, 323, 524
PspN4I	GGNNCC	3 cut(s)	61, 211, 457
PspPI	GGNCC	2 cut(s)	171, 409
PsrI	GAACNNNNNNTAC	2 cut(s)	236, 268
PsuI	RGATCY	3 cut(s)	59, 209, 455
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
SapI	GCTCTTC	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	521
SatI	GCNGC	6 cut(s)	51, 54, 158, 163, 321, 376
Sau3AI	GATC	6 cut(s)	59, 90, 209, 355, 455, 514
Sau96I	GGNCC	2 cut(s)	171, 409
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	6 cut(s)	74, 101, 169, 207, 325, 526
SetI	ASST	6 cut(s)	44, 180, 273, 342, 449, 527
SfaNI	GCATC	1 cut(s)	270
SfiI	GGCCNNNNNGGCC	1 cut(s)	417
Sse9I	AATT	1 cut(s)	518
SseBI	AGGCCT	1 cut(s)	77
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	6 cut(s)	72, 99, 167, 205, 323, 524
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	139
TasI	AATT	1 cut(s)	518
TauI	GCSGC	5 cut(s)	53, 56, 165, 323, 378
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	106
TspGWI	ACGGA	2 cut(s)	439, 448
TspRI	CASTG	1 cut(s)	136
Tth111I	GACNNNGTC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.