Rmu_sc0004673.1_g000009

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004673.1
OG0004213
Physical Location & Seq
Forward (+)
38686 .. 40633
1948 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1449 bp
atgctgtgcaagaagttgtggtcagacagatttagtaatcttccggacgaacttgctcatcatattctttccttcctcggtgtcagagatctcgcttctgtaggggctgtgtccaaaaggtgtagagaattttacctctcagttccatcagtgaatattgatgcaagttgttatctcccagttccattagtgaatcttgatgcaagttgttatctaaaaaccagcagcaagttaggagcgctgatgtgtttctgggatagatacatgtttcagcgtggtgttaataagatgcaacgcttttacattaattggactttctttacacgcggcattgcgaataaagactctgtggagcaagatcgaataaactcttggattcataacgcagtaaggtgtaatgttgaagagcttaaccttattttcacatcatgtggtggattatcgtttgtgctgccatcttgcctatatcagtcacaatctttcaagtctctagtattaaaatgcttggataagatgactcttgaagcaccaccagtatctctttcctgcaatctccgttacttgcagttgacttctgttagaatagcagatgaaaagttttgcaagtggatctcctctagctgcaaatgcattaagaaattacagcttattcaagttaaagggattaaaaatattaccattcaaagctcgtctttggagtcatttacttttgttggtatggacctggtcgaccttaatatctcctgtcagaaacttagaagtattaaaataaagtggaacttttatgcttcacctgggtaccgctcatcgaatatatctgctccaaatctggaagatttaacatgggtgggcaaggtcttgaatagccaaaacctgggcaaattactgaatttaaaaagagctttcattgctcttgagcctacggtagatgacaatttatctgaggtcttttctagtatatgtaggactaaagatcttggtataaatgagaacaccatgaaggctatgttcaaagattgtttcatgcaagcaccattagatgacattcgtcgcctgggtcttgttcaacttacgagcttcagtaatgacatagttccaataacggcctctcttctcagaagaactggttatctgaataccttggtactgatgagttctaaaccttctagatcggactctaaatctatatcttcatctggatttgatatgggatactggaaattgcaaaacctcactttcatttaccagctgaaggatgtgagaatagacctctccagcgggtctaatgaaattgagtttgcaaagtacattctcgaaaatgctccgaatttgaagaagatcgtgatccgtcatcatccgggatcccaacaatcaaatatcgtggtagggaaggtgaccagatgcaagatcatttcgagagccattattgtgatccaggaaattcggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

482

Amino Acids

54.63

Weight (kDa)

9.33

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 11 - 43 2e-07 F-box-like
F-box PF00646 11 - 43 1.8e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 110 - 477 6.5e-17 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 123 - 279 5.2e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 798
AccB1I GGYRCC 1 cut(s) 798
AccB7I CCANNNNNTGG 1 cut(s) 874
AccBSI CCGCTC 1 cut(s) 804
AccI GTMKAC 1 cut(s) 729
AccII CGCG 1 cut(s) 327
AccIII TCCGGA 1 cut(s) 43
AciI CCGC 3 cut(s) 327, 802, 1278
AclWI GGATC 5 cut(s) 617, 1339, 1356, 1369, 1426
AcsI RAATTY 4 cut(s) 128, 889, 1327, 1440
AcuI CTGAAG 2 cut(s) 1063, 1271
AfaI GTAC 3 cut(s) 800, 1146, 1307
AfeI AGCGCT 1 cut(s) 240
AfiI CCNNNNNNNGG 2 cut(s) 874, 1252
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 9 cut(s) 404, 484, 524, 653, 683, 862, 1012, 1067, 1333
AjnI CCWGG 5 cut(s) 723, 793, 873, 1053, 1434
AjuI GAANNNNNNNTTGG 2 cut(s) 355, 387
AluBI AGCT 7 cut(s) 409, 621, 646, 687, 902, 1077, 1249
AluI AGCT 7 cut(s) 409, 621, 646, 687, 902, 1077, 1249
Alw26I GTCTC 1 cut(s) 492
AlwI GGATC 5 cut(s) 617, 1339, 1356, 1369, 1426
Aor13HI TCCGGA 1 cut(s) 43
Aor51HI AGCGCT 1 cut(s) 240
AoxI GGCC 1 cut(s) 1104
ApeKI GCWGC 3 cut(s) 225, 451, 621
ApoI RAATTY 4 cut(s) 128, 889, 1327, 1440
AseI ATTAAT 1 cut(s) 306
Asp718I GGTACC 1 cut(s) 798
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 721
AsuC2I CCSGG 1 cut(s) 1359
AsuHPI GGTGA 2 cut(s) 783, 1405
AvaII GGWCC 1 cut(s) 721
BaeI ACNNNNGTAYC 2 cut(s) 782, 815
BamHI GGATCC 1 cut(s) 1361
BanI GGYRCC 1 cut(s) 798
BbvI GCAGC 3 cut(s) 237, 438, 608
BccI CCATC 2 cut(s) 154, 463
BceAI ACGGC 1 cut(s) 1119
BciT130I CCWGG 5 cut(s) 725, 795, 875, 1055, 1436
BciVI GTATCC 1 cut(s) 1205
BcnI CCSGG 1 cut(s) 1359
BcoDI GTCTC 1 cut(s) 492
BfaI CTAG 4 cut(s) 491, 618, 954, 1167
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 242
BfuI GTATCC 1 cut(s) 1205
BglII AGATCT 2 cut(s) 88, 973
BisI GCNGC 4 cut(s) 226, 328, 452, 622
BlsI GCNGC 4 cut(s) 227, 329, 453, 623
Bme1390I CCNGG 6 cut(s) 725, 795, 875, 1055, 1359, 1436
Bme18I GGWCC 1 cut(s) 721
BmgT120I GGNCC 1 cut(s) 721
BmiI GGNNCC 2 cut(s) 800, 1363
BmrFI CCNGG 6 cut(s) 725, 795, 875, 1055, 1359, 1436
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 4 cut(s) 151, 190, 279, 1391
BmuI ACTGGG 1 cut(s) 173
BoxI GACNNNNGTC 1 cut(s) 1047
BpmI CTGGAG 1 cut(s) 1258
BpuEI CTTGAG 1 cut(s) 935
BpuMI CCSGG 1 cut(s) 1359
BsaBI GATNNNNATC 1 cut(s) 1343
BsaJI CCNNGG 5 cut(s) 76, 794, 874, 1054, 1140
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 2 cut(s) 874, 1252
Bse1I ACTGG 4 cut(s) 179, 533, 1129, 1220
Bse3DI GCAATG 2 cut(s) 330, 906
Bse8I GATNNNNATC 1 cut(s) 1343
BseAI TCCGGA 1 cut(s) 43
BseBI CCWGG 5 cut(s) 725, 795, 875, 1055, 1436
BseDI CCNNGG 5 cut(s) 76, 794, 874, 1054, 1140
BseGI GGATG 2 cut(s) 1261, 1354
BseJI GATNNNNATC 1 cut(s) 1343
BseLI CCNNNNNNNGG 2 cut(s) 874, 1252
BseMI GCAATG 2 cut(s) 330, 906
BseMII CTCAG 3 cut(s) 153, 933, 1129
BseNI ACTGG 4 cut(s) 179, 533, 1129, 1220
BseRI GAGGAG 1 cut(s) 604
BseXI GCAGC 3 cut(s) 237, 438, 608
Bsh1236I CGCG 1 cut(s) 327
BshFI GGCC 1 cut(s) 1106
BshNI GGYRCC 1 cut(s) 798
BsiSI CCGG 2 cut(s) 44, 1358
BslI CCNNNNNNNGG 2 cut(s) 874, 1252
BsmAI GTCTC 1 cut(s) 492
BsnI GGCC 1 cut(s) 1106
Bsp13I TCCGGA 1 cut(s) 43
BspACI CCGC 3 cut(s) 327, 802, 1278
BspANI GGCC 1 cut(s) 1106
BspCNI CTCAG 3 cut(s) 152, 934, 1128
BspEI TCCGGA 1 cut(s) 43
BspFNI CGCG 1 cut(s) 327
BspLI GGNNCC 2 cut(s) 800, 1363
BspPI GGATC 5 cut(s) 617, 1339, 1356, 1369, 1426
BspQI GCTCTTC 1 cut(s) 399
BspT107I GGYRCC 1 cut(s) 798
BsrBI CCGCTC 1 cut(s) 804
BsrDI GCAATG 2 cut(s) 330, 906
BsrI ACTGG 4 cut(s) 179, 533, 1129, 1220
BssECI CCNNGG 5 cut(s) 76, 794, 874, 1054, 1140
BssT1I CCWWGG 1 cut(s) 1140
Bst2UI CCWGG 5 cut(s) 725, 795, 875, 1055, 1436
Bst4CI ACNGT 1 cut(s) 925
Bst6I CTCTTC 2 cut(s) 399, 1116
BstC8I GCNNGC 1 cut(s) 1029
BstDEI CTNAG 4 cut(s) 139, 755, 942, 1115
BstEII GGTNACC 1 cut(s) 1393
BstF5I GGATG 2 cut(s) 1261, 1354
BstFNI CGCG 1 cut(s) 327
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 492
BstMWI GCNNNNNNNGC 2 cut(s) 627, 908
BstNI CCWGG 5 cut(s) 725, 795, 875, 1055, 1436
BstNSI RCATGY 1 cut(s) 268
BstPAI GACNNNNGTC 1 cut(s) 1047
BstPI GGTNACC 1 cut(s) 1393
BstSCI CCNGG 6 cut(s) 723, 793, 873, 1053, 1357, 1434
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 3 cut(s) 237, 438, 608
BstX2I RGATCY 4 cut(s) 88, 609, 973, 1361
BstYI RGATCY 4 cut(s) 88, 609, 973, 1361
BsuI GTATCC 1 cut(s) 1205
BsuRI GGCC 1 cut(s) 1106
BtsCI GGATG 2 cut(s) 1261, 1354
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 1029
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 721
CsiI ACCWGGT 1 cut(s) 723
Csp6I GTAC 3 cut(s) 799, 1145, 1306
CspCI CAANNNNNGTGG 2 cut(s) 1362, 1397
CviAII CATG 5 cut(s) 265, 429, 843, 997, 1024
CviQI GTAC 3 cut(s) 799, 1145, 1306
DdeI CTNAG 4 cut(s) 139, 755, 942, 1115
DraI TTTAAA 1 cut(s) 894
Eam1104I CTCTTC 2 cut(s) 399, 1116
EarI CTCTTC 2 cut(s) 399, 1116
Eco130I CCWWGG 1 cut(s) 1140
Eco47I GGWCC 1 cut(s) 721
Eco47III AGCGCT 1 cut(s) 240
Eco57I CTGAAG 2 cut(s) 1063, 1271
Eco91I GGTNACC 1 cut(s) 1393
EcoO65I GGTNACC 1 cut(s) 1393
EcoRII CCWGG 5 cut(s) 723, 793, 873, 1053, 1434
EcoT14I CCWWGG 1 cut(s) 1140
EcoT22I ATGCAT 1 cut(s) 632
ErhI CCWWGG 1 cut(s) 1140
FaeI CATG 5 cut(s) 268, 432, 846, 1000, 1027
FalI AAGNNNNNCTT 4 cut(s) 676, 708, 764, 796
FatI CATG 5 cut(s) 264, 428, 842, 996, 1023
FauI CCCGC 1 cut(s) 1271
FblI GTMKAC 1 cut(s) 729
Fnu4HI GCNGC 4 cut(s) 226, 328, 452, 622
FokI GGATG 2 cut(s) 1268, 1341
Fsp4HI GCNGC 4 cut(s) 226, 328, 452, 622
FspBI CTAG 4 cut(s) 491, 618, 954, 1167
GlaI GCGC 1 cut(s) 240
GluI GCNGC 4 cut(s) 226, 328, 452, 622
GsuI CTGGAG 1 cut(s) 1258
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 1 cut(s) 1106
HapII CCGG 2 cut(s) 44, 1358
HhaI GCGC 1 cut(s) 241
Hin1II CATG 5 cut(s) 268, 432, 846, 1000, 1027
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 2 cut(s) 570, 730
HindII GTYRAC 2 cut(s) 570, 730
HinfI GANTC 6 cut(s) 193, 344, 376, 517, 698, 1175
HpaII CCGG 2 cut(s) 44, 1358
HphI GGTGA 2 cut(s) 783, 1405
Hpy166II GTNNAC 2 cut(s) 570, 730
Hpy188I TCNGA 8 cut(s) 25, 86, 750, 943, 1118, 1134, 1174, 1326
Hpy8I GTNNAC 2 cut(s) 570, 730
Hpy99I CGWCG 1 cut(s) 1053
HpyAV CCTTC 5 cut(s) 82, 994, 1173, 1246, 1384
HpyCH4III ACNGT 1 cut(s) 925
HpyF10VI GCNNNNNNNGC 2 cut(s) 627, 908
HpyF3I CTNAG 4 cut(s) 139, 755, 942, 1115
Hsp92II CATG 5 cut(s) 268, 432, 846, 1000, 1027
HspAI GCGC 1 cut(s) 239
Kpn2I TCCGGA 1 cut(s) 43
KpnI GGTACC 1 cut(s) 802
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 4 cut(s) 236, 352, 826, 1327
Lsp1109I GCAGC 3 cut(s) 237, 438, 608
LweI GCATC 4 cut(s) 151, 190, 279, 1391
MabI ACCWGGT 1 cut(s) 723
MaeI CTAG 4 cut(s) 491, 618, 954, 1167
MaeIII GTNAC 3 cut(s) 471, 557, 1393
MbiI CCGCTC 1 cut(s) 804
MboII GAAGA 8 cut(s) 32, 416, 845, 1103, 1131, 1182, 1345, 1348
MflI RGATCY 4 cut(s) 88, 609, 973, 1361
MlyI GAGTC 4 cut(s) 338, 511, 707, 1169
MnlI CCTC 7 cut(s) 86, 146, 625, 937, 1117, 1241, 1280
Mph1103I ATGCAT 1 cut(s) 632
MroI TCCGGA 1 cut(s) 43
MslI CAYNNNNRTG 1 cut(s) 1427
MspA1I CMGCKG 2 cut(s) 1249, 1278
MspI CCGG 2 cut(s) 44, 1358
MspR9I CCNGG 6 cut(s) 725, 795, 875, 1055, 1359, 1436
MvaI CCWGG 5 cut(s) 725, 795, 875, 1055, 1436
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 2 cut(s) 627, 908
NciI CCSGG 1 cut(s) 1359
NlaIII CATG 5 cut(s) 268, 432, 846, 1000, 1027
NlaIV GGNNCC 2 cut(s) 800, 1363
NmuCI GTSAC 2 cut(s) 471, 1393
NsiI ATGCAT 1 cut(s) 632
NspI RCATGY 1 cut(s) 268
PciI ACATGT 1 cut(s) 264
PciSI GCTCTTC 1 cut(s) 399
PfeI GAWTC 2 cut(s) 193, 376
PflFI GACNNNGTC 1 cut(s) 725
PflMI CCANNNNNTGG 1 cut(s) 874
PfoI TCCNGGA 2 cut(s) 1357, 1434
PkrI GCNGC 4 cut(s) 227, 329, 453, 623
PleI GAGTC 4 cut(s) 338, 511, 706, 1169
PpsI GAGTC 4 cut(s) 338, 511, 706, 1169
PscI ACATGT 1 cut(s) 264
PshAI GACNNNNGTC 1 cut(s) 1047
PshBI ATTAAT 1 cut(s) 306
Psp6I CCWGG 5 cut(s) 723, 793, 873, 1053, 1434
PspEI GGTNACC 1 cut(s) 1393
PspGI CCWGG 5 cut(s) 723, 793, 873, 1053, 1434
PspN4I GGNNCC 2 cut(s) 800, 1363
PspPI GGNCC 1 cut(s) 721
PsuI RGATCY 4 cut(s) 88, 609, 973, 1361
PsyI GACNNNGTC 1 cut(s) 725
PvuII CAGCTG 1 cut(s) 1249
RsaI GTAC 3 cut(s) 800, 1146, 1307
RsaNI GTAC 3 cut(s) 799, 1145, 1306
RseI CAYNNNNRTG 1 cut(s) 1427
SalI GTCGAC 1 cut(s) 728
SapI GCTCTTC 1 cut(s) 399
SatI GCNGC 4 cut(s) 226, 328, 452, 622
Sau96I GGNCC 1 cut(s) 721
SchI GAGTC 4 cut(s) 338, 511, 707, 1169
ScrFI CCNGG 6 cut(s) 725, 795, 875, 1055, 1359, 1436
SexAI ACCWGGT 1 cut(s) 723
SfaNI GCATC 4 cut(s) 151, 190, 279, 1391
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 1 cut(s) 721
SmiMI CAYNNNNRTG 1 cut(s) 1427
SmlI CTYRAG 1 cut(s) 914
SmoI CTYRAG 1 cut(s) 914
SsiI CCGC 3 cut(s) 327, 802, 1278
SspI AATATT 2 cut(s) 157, 673
SspMI CTAG 4 cut(s) 491, 618, 954, 1167
StyD4I CCNGG 6 cut(s) 723, 793, 873, 1053, 1357, 1434
StyI CCWWGG 1 cut(s) 1140
TaaI ACNGT 1 cut(s) 925
TaqI TCGA 5 cut(s) 361, 729, 809, 1314, 1415
TatI WGTACW 1 cut(s) 1305
TauI GCSGC 1 cut(s) 330
TfiI GAWTC 2 cut(s) 193, 376
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 2 cut(s) 471, 1393
TseI GCWGC 3 cut(s) 225, 451, 621
Tsp45I GTSAC 2 cut(s) 471, 1393
TspDTI ATGAA 8 cut(s) 368, 606, 895, 1012, 1013, 1182, 1228, 1302
TspGWI ACGGA 2 cut(s) 545, 1337
TspRI CASTG 1 cut(s) 156
Tth111I GACNNNGTC 1 cut(s) 725
Van91I CCANNNNNTGG 1 cut(s) 874
VpaK11BI GGWCC 1 cut(s) 721
VspI ATTAAT 1 cut(s) 306
XapI RAATTY 4 cut(s) 128, 889, 1327, 1440
XbaI TCTAGA 1 cut(s) 1166
XceI RCATGY 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 729
XspI CTAG 4 cut(s) 491, 618, 954, 1167
Zsp2I ATGCAT 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.