Rmu_sc0005532.1_g000008

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005532.1
OG0003704
Physical Location & Seq
Reverse (-)
23795 .. 25513
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 810 bp
atgtcggcagatctgccagttcatcagacgacggagtcagctgcaaaccgtcgacccaatgatcggcccttttcttgcctcctctctttcccaatttctgttttcaactcttcaattctgacccaagacgaattgaagaaaatcgccacctacaaggtggtcgagtccagcatgatcttcggcctcggctctggctccaccgtcaaacacgccgtggatcgcttgggcgagcttttacaatcgggaaaagttcacagcatcatcggaatttctgagaacacctaccaacaagtcatctctcttagaattccattatccaacctcgatgactacccgatcctcgatctcgctattgacggtgccgacgaggtggacccccacctcaacctagtcaaaggccgctgcaggtacctcttgagagagaaaatggtggagggcgcgttagaaattcgtgctaggttcaagaacatgaacgaatcaaggattgctgaaattttgttcttttgctttttagctggccttgataatttggatgatggcctgaaggggaatgttttggaattgaaggaagagttggactctgaatttgttagtgtcctcaagtccttggggttggatgtggagatgagatcaaaagaattcattgagcaaactttgccctcagaagtcaaggccagatttttttctgctgggttcaagaacatgaatgaatcaacattgttgcgattctttttttgctggtttcaagaacatgaagatgaaaaattgttgggttcaagtgttaccaacatgaatctgctgatgtggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

269

Amino Acids

30.41

Weight (kDa)

5.1

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 88 - 146 1.4e-15 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 34
Acc36I ACCTGC 1 cut(s) 396
Acc65I GGTACC 1 cut(s) 408
AccB1I GGYRCC 2 cut(s) 359, 408
AccI GTMKAC 1 cut(s) 52
AccII CGCG 1 cut(s) 440
AciI CCGC 1 cut(s) 400
AclWI GGATC 2 cut(s) 225, 331
AcsI RAATTY 6 cut(s) 267, 306, 447, 492, 584, 638
AcuI CTGAAG 1 cut(s) 563
AdeI CACNNNGTG 1 cut(s) 214
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 8 cut(s) 106, 114, 136, 463, 565, 697, 746, 777
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 3 cut(s) 41, 232, 515
AluI AGCT 3 cut(s) 41, 232, 515
AlwI GGATC 2 cut(s) 225, 331
AoxI GGCC 6 cut(s) 65, 181, 397, 517, 538, 672
ApeKI GCWGC 2 cut(s) 41, 402
ApoI RAATTY 6 cut(s) 267, 306, 447, 492, 584, 638
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
Asp718I GGTACC 1 cut(s) 408
AspLEI GCGC 1 cut(s) 440
AspS9I GGNCC 2 cut(s) 66, 373
AvaII GGWCC 1 cut(s) 373
BanI GGYRCC 2 cut(s) 359, 408
BbvI GCAGC 2 cut(s) 28, 389
BccI CCATC 1 cut(s) 530
BceAI ACGGC 1 cut(s) 197
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BfaI CTAG 2 cut(s) 389, 456
BfmI CTRYAG 1 cut(s) 403
BfuAI ACCTGC 1 cut(s) 396
BglII AGATCT 1 cut(s) 10
BisI GCNGC 3 cut(s) 42, 400, 403
BlsI GCNGC 3 cut(s) 43, 401, 404
Bme18I GGWCC 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 66, 373
BmiI GGNNCC 4 cut(s) 196, 361, 375, 410
BmsI GCATC 1 cut(s) 267
BplI GAGNNNNNCTC 2 cut(s) 563, 595
BpuEI CTTGAG 2 cut(s) 436, 584
BsaJI CCNNGG 3 cut(s) 184, 213, 606
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 17
BseDI CCNNGG 3 cut(s) 184, 213, 606
BseGI GGATG 2 cut(s) 538, 622
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMII CTCAG 2 cut(s) 264, 675
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 28, 389
BseYI CCCAGC 1 cut(s) 689
Bsh1236I CGCG 1 cut(s) 440
BshFI GGCC 6 cut(s) 67, 183, 399, 519, 540, 674
BshNI GGYRCC 2 cut(s) 359, 408
BslI CCNNNNNNNGG 1 cut(s) 63
BsnI GGCC 6 cut(s) 67, 183, 399, 519, 540, 674
Bsp143I GATC 7 cut(s) 10, 61, 174, 217, 336, 343, 629
BspACI CCGC 1 cut(s) 400
BspANI GGCC 6 cut(s) 67, 183, 399, 519, 540, 674
BspCNI CTCAG 2 cut(s) 265, 674
BspFNI CGCG 1 cut(s) 440
BspLI GGNNCC 4 cut(s) 196, 361, 375, 410
BspMAI CTGCAG 1 cut(s) 407
BspMI ACCTGC 1 cut(s) 396
BspPI GGATC 2 cut(s) 225, 331
BspT107I GGYRCC 2 cut(s) 359, 408
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 3 cut(s) 184, 213, 606
BssMI GATC 7 cut(s) 10, 61, 174, 217, 336, 343, 629
BssT1I CCWWGG 1 cut(s) 606
Bst4CI ACNGT 3 cut(s) 50, 202, 359
Bst6I CTCTTC 2 cut(s) 115, 564
BstAPI GCANNNNNTGC 1 cut(s) 655
BstC8I GCNNGC 2 cut(s) 230, 517
BstDEI CTNAG 3 cut(s) 273, 302, 661
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 538, 622
BstFNI CGCG 1 cut(s) 440
BstHHI GCGC 1 cut(s) 440
BstKTI GATC 7 cut(s) 13, 64, 177, 220, 339, 346, 632
BstMBI GATC 7 cut(s) 10, 61, 174, 217, 336, 343, 629
BstMWI GCNNNNNNNGC 1 cut(s) 655
BstSFI CTRYAG 1 cut(s) 403
BstUI CGCG 1 cut(s) 440
BstV1I GCAGC 2 cut(s) 28, 389
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 6 cut(s) 67, 183, 399, 519, 540, 674
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 2 cut(s) 538, 622
BveI ACCTGC 1 cut(s) 396
Cac8I GCNNGC 2 cut(s) 230, 517
CfoI GCGC 1 cut(s) 440
Cfr13I GGNCC 2 cut(s) 66, 373
Csp6I GTAC 1 cut(s) 409
CviAII CATG 5 cut(s) 172, 469, 703, 752, 790
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 3 cut(s) 273, 302, 661
DpnI GATC 7 cut(s) 12, 63, 176, 219, 338, 345, 631
DpnII GATC 7 cut(s) 10, 61, 174, 217, 336, 343, 629
DraIII CACNNNGTG 1 cut(s) 214
DrdI GACNNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 115, 564
EarI CTCTTC 2 cut(s) 115, 564
Eco130I CCWWGG 1 cut(s) 606
Eco47I GGWCC 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 563
EcoRI GAATTC 2 cut(s) 306, 638
EcoT14I CCWWGG 1 cut(s) 606
ErhI CCWWGG 1 cut(s) 606
FaeI CATG 5 cut(s) 175, 472, 706, 755, 793
FaiI YATR 5 cut(s) 173, 470, 704, 753, 791
FatI CATG 5 cut(s) 171, 468, 702, 751, 789
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 3 cut(s) 42, 400, 403
FokI GGATG 2 cut(s) 545, 629
Fsp4HI GCNGC 3 cut(s) 42, 400, 403
FspBI CTAG 2 cut(s) 389, 456
GlaI GCGC 1 cut(s) 439
GluI GCNGC 3 cut(s) 42, 400, 403
GsaI CCCAGC 1 cut(s) 693
HaeIII GGCC 6 cut(s) 67, 183, 399, 519, 540, 674
HhaI GCGC 1 cut(s) 440
Hin1II CATG 5 cut(s) 175, 472, 706, 755, 793
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HincII GTYRAC 1 cut(s) 53
HindII GTYRAC 1 cut(s) 53
HinfI GANTC 7 cut(s) 35, 164, 476, 578, 710, 726, 793
Hpy166II GTNNAC 3 cut(s) 53, 253, 373
Hpy188I TCNGA 6 cut(s) 27, 120, 266, 274, 583, 664
Hpy188III TCNNGA 5 cut(s) 243, 415, 463, 697, 746
Hpy8I GTNNAC 3 cut(s) 53, 253, 373
Hpy99I CGWCG 3 cut(s) 34, 54, 368
HpyAV CCTTC 2 cut(s) 538, 559
HpyCH4III ACNGT 3 cut(s) 50, 202, 359
HpyCH4V TGCA 2 cut(s) 44, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 655
HpyF3I CTNAG 3 cut(s) 273, 302, 661
Hsp92II CATG 5 cut(s) 175, 472, 706, 755, 793
HspAI GCGC 1 cut(s) 438
KpnI GGTACC 1 cut(s) 412
Kzo9I GATC 7 cut(s) 10, 61, 174, 217, 336, 343, 629
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 9 cut(s) 30, 177, 181, 391, 501, 554, 675, 688, 724
Lsp1109I GCAGC 2 cut(s) 28, 389
LweI GCATC 1 cut(s) 267
MaeI CTAG 2 cut(s) 389, 456
MaeIII GTNAC 1 cut(s) 781
MalI GATC 7 cut(s) 12, 63, 176, 219, 338, 345, 631
MboI GATC 7 cut(s) 10, 61, 174, 217, 336, 343, 629
MboII GAAGA 5 cut(s) 102, 148, 169, 581, 767
MflI RGATCY 1 cut(s) 10
MlyI GAGTC 3 cut(s) 44, 173, 572
MmeI TCCRAC 3 cut(s) 342, 555, 594
MslI CAYNNNNRTG 1 cut(s) 756
MspA1I CMGCKG 2 cut(s) 41, 402
MvnI CGCG 1 cut(s) 440
MwoI GCNNNNNNNGC 1 cut(s) 655
NdeII GATC 7 cut(s) 10, 61, 174, 217, 336, 343, 629
NlaIII CATG 5 cut(s) 175, 472, 706, 755, 793
NlaIV GGNNCC 4 cut(s) 196, 361, 375, 410
NmeAIII GCCGAG 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PfeI GAWTC 4 cut(s) 476, 710, 726, 793
PflFI GACNNNGTC 1 cut(s) 34
PkrI GCNGC 3 cut(s) 43, 401, 404
PleI GAGTC 3 cut(s) 43, 172, 572
PpsI GAGTC 3 cut(s) 43, 172, 572
PspFI CCCAGC 1 cut(s) 689
PspN4I GGNNCC 4 cut(s) 196, 361, 375, 410
PspPI GGNCC 2 cut(s) 66, 373
PstI CTGCAG 1 cut(s) 407
PsuI RGATCY 1 cut(s) 10
PsyI GACNNNGTC 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 756
SalI GTCGAC 1 cut(s) 51
SatI GCNGC 3 cut(s) 42, 400, 403
Sau3AI GATC 7 cut(s) 10, 61, 174, 217, 336, 343, 629
Sau96I GGNCC 2 cut(s) 66, 373
SchI GAGTC 3 cut(s) 44, 173, 572
SfaNI GCATC 1 cut(s) 267
SfcI CTRYAG 1 cut(s) 403
SinI GGWCC 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 2 cut(s) 415, 599
SmoI CTYRAG 2 cut(s) 415, 599
SsiI CCGC 1 cut(s) 400
SspMI CTAG 2 cut(s) 389, 456
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 3 cut(s) 50, 202, 359
TaqI TCGA 4 cut(s) 52, 162, 324, 342
TauI GCSGC 1 cut(s) 402
TfiI GAWTC 4 cut(s) 476, 710, 726, 793
TseI GCWGC 2 cut(s) 41, 402
TspDTI ATGAA 8 cut(s) 11, 485, 631, 719, 723, 768, 774, 806
TspGWI ACGGA 1 cut(s) 47
Tth111I GACNNNGTC 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 373
XapI RAATTY 6 cut(s) 267, 306, 447, 492, 584, 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 52
XspI CTAG 2 cut(s) 389, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.