Rmu_sc0005870.1_g000002

Belongs to the aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005870.1
OG0001676
Physical Location & Seq
Reverse (-)
3866 .. 6241
2376 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 606 bp
atggagtactgggttgagtttaaaaaagagaaaacccctcatgatttttataatttggataatcatatgcatcagtttaagcctttaagggaagcagcgcgaggtaagcatctcaatctcaacatatgcatcggagccaaaaaggtgaaagctgaatgtcaacagttcagggaatattgtagggcaggaaatggagaaggcttactgaaactatacctggatggttcttcaaacaaatcaagacagtggatttctcttacaacaacttcacttgggaaagctcaggctcacttcctactgaatgtgatagagggagtgttgttggacgatgggaatcagagccaggagaacagtttcatatatggacctccaagggaaaggacagcgcaatcagagaccaagtttcagtgctatgaacctgcaatcatgaaatacttgggatattaccctgcattgacacctgatgaggtcaaggagcgggtagcactagcaacgaagccacaaaaatcatgggcaaatagtagcttcaagcaaagacgcctatttcttcggattattctcaagtatataatagaacaccaagaccttataagtgagttcagttag

Protein Analysis

201

Amino Acids

23.37

Weight (kDa)

9.06

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 130 - 199 1.3e-06 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 51, 590
Acc36I ACCTGC 1 cut(s) 427
AccBSI CCGCTC 1 cut(s) 478
AccII CGCG 1 cut(s) 100
AciI CCGC 1 cut(s) 478
AcyI GRCGYC 1 cut(s) 538
AfaI GTAC 1 cut(s) 8
AgsI TTSAA 2 cut(s) 231, 529
AjnI CCWGG 2 cut(s) 216, 342
AluBI AGCT 3 cut(s) 152, 281, 525
AluI AGCT 3 cut(s) 152, 281, 525
Alw26I GTCTC 1 cut(s) 389
ApeKI GCWGC 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 353
AspLEI GCGC 2 cut(s) 100, 388
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 365
BbvI GCAGC 1 cut(s) 107
BccI CCATC 2 cut(s) 215, 323
BciT130I CCWGG 2 cut(s) 218, 344
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 1 cut(s) 488
BfuAI ACCTGC 1 cut(s) 427
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmcAI AGTACT 1 cut(s) 8
Bme1390I CCNGG 2 cut(s) 218, 344
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 2 cut(s) 218, 344
BmrI ACTGGG 1 cut(s) 19
BmsI GCATC 3 cut(s) 79, 118, 138
BmuI ACTGGG 1 cut(s) 19
Bpu10I CCTNAGC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 538
BsaI GGTCTC 1 cut(s) 389
BsaJI CCNNGG 1 cut(s) 371
Bse1I ACTGG 1 cut(s) 14
Bse8I GATNNNNATC 1 cut(s) 333
BseBI CCWGG 2 cut(s) 218, 344
BseDI CCNNGG 1 cut(s) 371
BseGI GGATG 1 cut(s) 226
BseJI GATNNNNATC 1 cut(s) 333
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 14
BseXI GCAGC 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 389
Bso31I GGTCTC 1 cut(s) 389
BspACI CCGC 1 cut(s) 478
BspCNI CTCAG 1 cut(s) 295
BspFNI CGCG 1 cut(s) 100
BspHI TCATGA 2 cut(s) 40, 426
BspLI GGNNCC 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 427
BspTNI GGTCTC 1 cut(s) 389
BsrBI CCGCTC 1 cut(s) 478
BsrI ACTGG 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 371
BssNI GRCGYC 1 cut(s) 538
BssT1I CCWWGG 1 cut(s) 371
Bst2UI CCWGG 2 cut(s) 218, 344
Bst4CI ACNGT 3 cut(s) 165, 246, 353
BstACI GRCGYC 1 cut(s) 538
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 100
BstHHI GCGC 2 cut(s) 100, 388
BstMAI GTCTC 1 cut(s) 389
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNI CCWGG 2 cut(s) 218, 344
BstSCI CCNGG 2 cut(s) 216, 342
BstUI CGCG 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 107
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 251, 413
BveI ACCTGC 1 cut(s) 427
CciI TCATGA 2 cut(s) 40, 426
CfoI GCGC 2 cut(s) 100, 388
Cfr13I GGNCC 1 cut(s) 365
CseI GACGC 1 cut(s) 546
Csp6I GTAC 1 cut(s) 7
CviAII CATG 3 cut(s) 41, 427, 510
CviJI RGCY 9 cut(s) 82, 137, 152, 201, 281, 287, 342, 499, 525
CviKI_1 RGCY 9 cut(s) 82, 137, 152, 201, 281, 287, 342, 499, 525
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 282
DraI TTTAAA 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 371
Eco31I GGTCTC 1 cut(s) 389
Eco47I GGWCC 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 216, 342
EcoT14I CCWWGG 1 cut(s) 371
EcoT22I ATGCAT 2 cut(s) 72, 131
ErhI CCWWGG 1 cut(s) 371
FaeI CATG 3 cut(s) 44, 430, 513
FatI CATG 3 cut(s) 40, 426, 509
FauI CCCGC 1 cut(s) 471
FauNDI CATATG 2 cut(s) 66, 125
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 488
GlaI GCGC 2 cut(s) 99, 387
GluI GCNGC 1 cut(s) 96
HgaI GACGC 1 cut(s) 546
HhaI GCGC 2 cut(s) 100, 388
Hin1I GRCGYC 1 cut(s) 538
Hin1II CATG 3 cut(s) 44, 430, 513
Hin6I GCGC 2 cut(s) 98, 386
HinP1I GCGC 2 cut(s) 98, 386
HincII GTYRAC 1 cut(s) 161
HindII GTYRAC 1 cut(s) 161
HinfI GANTC 1 cut(s) 334
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 4 cut(s) 134, 339, 394, 552
Hpy188III TCNNGA 3 cut(s) 41, 240, 427
Hpy8I GTNNAC 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 3 cut(s) 165, 246, 353
HpyCH4V TGCA 4 cut(s) 70, 129, 422, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 1 cut(s) 282
Hsp92I GRCGYC 1 cut(s) 538
Hsp92II CATG 3 cut(s) 44, 430, 513
HspAI GCGC 2 cut(s) 98, 386
LmnI GCTCC 2 cut(s) 134, 475
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 3 cut(s) 79, 118, 138
MaeI CTAG 1 cut(s) 488
MbiI CCGCTC 1 cut(s) 478
MboII GAAGA 2 cut(s) 219, 539
MluCI AATT 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 5 cut(s) 48, 95, 304, 378, 460
Mph1103I ATGCAT 2 cut(s) 72, 131
MroXI GAANNNNTTC 1 cut(s) 353
MseI TTAA 3 cut(s) 21, 78, 86
MspR9I CCNGG 2 cut(s) 218, 344
MvaI CCWGG 2 cut(s) 218, 344
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeI CATATG 2 cut(s) 66, 125
NlaIII CATG 3 cut(s) 44, 430, 513
NlaIV GGNNCC 1 cut(s) 136
NsiI ATGCAT 2 cut(s) 72, 131
PagI TCATGA 2 cut(s) 40, 426
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 1 cut(s) 334
PkrI GCNGC 1 cut(s) 97
PsiI TTATAA 2 cut(s) 51, 590
Psp6I CCWGG 2 cut(s) 216, 342
PspGI CCWGG 2 cut(s) 216, 342
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 365
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 3 cut(s) 21, 78, 86
SatI GCNGC 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 365
ScaI AGTACT 1 cut(s) 8
ScrFI CCNGG 2 cut(s) 218, 344
SfaNI GCATC 3 cut(s) 79, 118, 138
SinI GGWCC 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 1 cut(s) 52
SsiI CCGC 1 cut(s) 478
SspI AATATT 1 cut(s) 176
SspMI CTAG 1 cut(s) 488
StyD4I CCNGG 2 cut(s) 216, 342
StyI CCWWGG 1 cut(s) 371
TaaI ACNGT 3 cut(s) 165, 246, 353
TasI AATT 1 cut(s) 52
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 3 cut(s) 21, 78, 86
Tru9I TTAA 3 cut(s) 21, 78, 86
TscAI CASTG 2 cut(s) 251, 413
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 346, 429, 443
TspRI CASTG 2 cut(s) 251, 413
VpaK11BI GGWCC 1 cut(s) 365
XcmI CCANNNNNNNNNTGG 1 cut(s) 507
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 1 cut(s) 488
ZrmI AGTACT 1 cut(s) 8
Zsp2I ATGCAT 2 cut(s) 72, 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.