Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006069.1

Orthogroup ID

OG0001672

Physical Location & Seq

Genomic Coordinates Forward (+)

18107 .. 26195

Gene Structure 8089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2982 bp

atgcacacaatcccaatggccactctagtatcccagccacccctcctccaccttccgcagtccaagacccgaattctctgcaacaagcccaacaacaacaacaagaagaccgactcagccgcattcaaggagaagaagcacgtctccgtcgactacgacagcggcactcaccacctctccactcatatcggcggcttcaggaagcgagacatccccaaacaccaccgcttacgcgtcgaaacggagcgtttccagaaggactgggccgtctccgacgtcgtcaatcgggtctatcagctccgtcgcggtgacgacattgacggcgtgctcaatcgatgggtcggacgcttcgccaggaagaacttccccatcctgattagagaaatgacggcgagggggtcggtggagcactgtatgcaagtgttccggtggatgaagaccctcaagaactactgtgctcgcactgatatttataacatgttgatcagattgcacgccaggcatagtcttgttgatcaagctcgcggcttgtttttcgaaatgcaagaatggaggtgcaagcctgatgctgagtcctacaatgctcttatcaatgcacatggtcgagcaggtcaatggcgctgggccatgaacattatggatgacatgctgcgtgcagctatccctcctagtcggtcaacatataacaacttgatcaatgcatgtggatctagtggaaattggagagaagctttaaaagtttgcaagaaaatgacagataatggagttggacctgatcttgtgactcacaatattgttttatctgcatacaaaactggggctcaatattcaaaagctttatcttattttgaacttatgaagggaacaaatatccgtccagacacaacgaccctcaatattgttatatattgcctagtgaagcttggacagtatgggaaagccattgatattttcaattccatgagagataagggagcagaatgtcgccctgacatcgtaacattcaccagcatcattcatttgtattctgtgagcgggcagatagacaactgcacagccgtatttaatacaattcttgcagaaggcctaaaacctaacattgtttcctataatgcactattaggtgcatatgcttcacatgggatgtgcacagaggcggcatcagtatttaatgagatgaagaaaagtagttttcggccagatgttgtgtcttatacatctctactcaatgcttatggaagatcacgacatcctaagaaggctagggaagtttttgacaggatgaaggccaaccacttgaagccaaacgttgtgacctacaacgcactgattaatgcctatggatccagtggtttattagccgaagctgttgaggttttgcgtgagatggagcaagatggaattcatccaaacattgtctcaatatgtacccttttggctgcttgtggacaatgtggccagaaggtgaaaattgatgccatactttcagcagccaagctacgaggcattgaattgaacacaattgcctataattcggctattgggagctatatgaatttgggagaacatgagaaagctataaacttgtatcaatctatgagaaagaagaaagtgaaaccggattctgttacttacaatgtgttgataagtggttgttgtaagatgtcaaaatacagtgaggcactaaccttttttgatgaaatggtggatttgaaaattcctatgtccaaagaagtctactcatctgtgctctgtgcctacaacaagaagggccaacttacggaagcagaatctgtattcaactcaatgaagatggctggatgtcctcctgatgtagttacatatactgcaatgttacatgcgtatagtgctgcagagaattgggaaaaggcttgtgagctatttcaagaaatggaaatcaatggcatccaaccagatgctatcgcatgttcagctctgatgagagctttcaacaaaggaggccatccctctagagttctttttctggcagaactcatgagagaaaaagaaattcctttcaatgatgccattttctttgaaatggtttcggcttgtagcttattacaagattggagaacaacaatacaattgattaaggtaatagagccctcattccctaaactttcagtcgggcttaagaatcagcttctgcagattatgggaagaagtggaaagacagaggctatgatgaagttgttctacaagataattgcatccaatggtgatatcaactttgatacttactcaattttgttgaagaatcttttgtctgttggaagttggaggaaatatattgaggtattgcagtggatggtggatgctagagtacgaccttcaagccaaatgtatctcgatatatcctgttttgcacagaaaagtggtggaactgaatatgcttctattataaatgaaagaatcgaattattgaaaagaaaagcaagggaagaagactctcgaagcaagctacgtgatactcactccacttccatgctggtacatagaacaagagcagagaaccacaggctgcttgaatcaagaatggctgttacgcatcctccatcccatcaccgattaaggcacgatgctctctccacacctctccaccgccccgattccgacgaccacctcctccgatctggtgagattccatcgttgattaagggacgctctctgcacacttcttcacctccccgattccaacgaccaccgcctccgatctgcttctctgtgaactcgacctcgtgctcgaacttaggcgttgatatttcttgccagcaaattgttgccttcggccttcttttgcctcaccgactcggtctacctatgtctgacctgcaactagaagatccacggtgccaacaaggtcacgtcgctccaccagtgcgtgtagatgttcaaggtcagcaagcaagctccgattctctactcgcctctggtttctctatggagtgtggcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004518 GO:0004519 GO:0005198 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010239 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0022414 GO:0031425 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

993

Amino Acids

111.72

Weight (kDa)

9.16

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	157 - 197	5.2e-08	PPR repeat family
PPR_3	PF13812	178 - 236	7.2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	188 - 235	6.8e-11	PPR repeat family
TPR_24	PF23276	201 - 321	1.1e-09	Fungal tetratrico peptide repeats
PPR_long	PF17177	209 - 323	4.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	212 - 270	6.3e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	223 - 270	8.3e-11	PPR repeat family
PPR	PF01535	226 - 256	2.1e-07	PPR repeat
PPR_long	PF17177	314 - 410	5.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	317 - 377	3.1e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	330 - 370	9.3e-06	PPR repeat family
PPR_2	PF13041	365 - 412	6.1e-15	PPR repeat family
PPR	PF01535	368 - 397	2.3e-07	PPR repeat
PPR_long	PF17177	385 - 496	2.6e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	388 - 448	4.4e-19	Pentatricopeptide repeat domain
PPR_2	PF13041	400 - 447	8e-15	PPR repeat family
PPR	PF01535	403 - 431	1.4e-06	PPR repeat
TPR_24	PF23276	407 - 533	1e-10	Fungal tetratrico peptide repeats
PPR_1	PF12854	432 - 464	2e-11	PPR repeat
PPR_2	PF13041	435 - 482	1.2e-12	PPR repeat family
PPR	PF01535	438 - 468	1.2e-08	PPR repeat
PPR_3	PF13812	494 - 554	2.7e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	506 - 554	5e-17	PPR repeat family
PPR_long	PF17177	523 - 667	1.7e-14	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	537 - 569	3.2e-10	PPR repeat
PPR_2	PF13041	541 - 584	8.9e-09	PPR repeat family
PPR	PF01535	543 - 571	2.7e-08	PPR repeat
PPR_3	PF13812	565 - 622	8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	579 - 622	1.7e-11	PPR repeat family
PPR_1	PF12854	607 - 639	1.1e-07	PPR repeat
PPR_2	PF13041	610 - 658	6.8e-13	PPR repeat family
PPR	PF01535	613 - 643	4.4e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41720 AT2G41720 AT2G41720
fragaria_vesca	FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060 FvH4_6g24060
malus_domestica	MD12G1080100.v1.1
prunus_persica	Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1 Prupe.7G058400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482651
rosa_laevigata	RLG00000001090 RLG00000016982 RLG00000023335 RLG00000028152 RLG00000032501
rosa_multiflora	Rmu_sc0004946.1_g000004 Rmu_sc0006069.1_g000004 Rmu_sc0015893.1_g000010
rosa_roxburghii	Rroxscaffold_3G00229260 Rroxscaffold_3G00244090 Rroxscaffold_4G00320230 Rroxscaffold_6G00399060 Rroxscaffold_7G00168600
rosa_rugosa	Rorug03G0197600 Rorug03G0197700
rosa_samantha	Rh3AG051200 Rh3AG249000 Rh3BG052500 Rh3BG284300 Rh3CG052100 Rh3CG282200 Rh3DG052800 Rh3DG278200 Rh4BG176200 Rh6AG132300 Rh7AG450400 Rh7BG246700 Rh7BG421800 Rh7BG421900 Rh7CG470100
rosa_wichuraiana	Rw3G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	474, 2426
AasI	GACNNNNNNGTC	1 cut(s)	266
AatII	GACGTC	1 cut(s)	279
Acc36I	ACCTGC	2 cut(s)	599, 2862
AccB1I	GGYRCC	1 cut(s)	2874
AccBSI	CCGCTC	1 cut(s)	1035
AccI	GTMKAC	3 cut(s)	150, 1737, 2839
AccII	CGCG	3 cut(s)	234, 306, 525
AclI	AACGTT	1 cut(s)	1308
AclWI	GGATC	4 cut(s)	715, 1338, 1351, 2861
AcoI	YGGCCR	3 cut(s)	18, 1196, 1456
AcsI	RAATTY	5 cut(s)	72, 1401, 1555, 1716, 2031
AcuI	CTGAAG	1 cut(s)	181
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	3 cut(s)	1429, 2349, 2517
AfiI	CCNNNNNNNGG	1 cut(s)	1780
AflII	CTTAAG	1 cut(s)	2156
AflIII	ACRYGT	2 cut(s)	232, 477
AjiI	CACGTC	2 cut(s)	142, 2890
AjnI	CCWGG	2 cut(s)	353, 497
Alw21I	GWGCWC	6 cut(s)	330, 411, 460, 1151, 1752, 2768
Alw26I	GTCTC	4 cut(s)	148, 201, 274, 1423
Alw44I	GTGCAC	1 cut(s)	1147
AlwI	GGATC	4 cut(s)	715, 1338, 1351, 2861
AlwNI	CAGNNNCTG	2 cut(s)	1793, 2170
ApaLI	GTGCAC	1 cut(s)	1147
ApeKI	GCWGC	6 cut(s)	649, 656, 1439, 1490, 1871, 2545
ApoI	RAATTY	5 cut(s)	72, 1401, 1555, 1716, 2031
AseI	ATTAAT	1 cut(s)	1332
Asp700I	GAANNNNTTC	2 cut(s)	362, 2216
AspLEI	GCGC	1 cut(s)	621
AspS9I	GGNCC	4 cut(s)	264, 624, 770, 1771
AsuHPI	GGTGA	9 cut(s)	161, 320, 997, 1477, 2255, 2579, 2672, 2697, 2819
AsuII	TTCGAA	1 cut(s)	537
AvaII	GGWCC	1 cut(s)	770
BaeGI	GKGCMC	1 cut(s)	1151
BaeI	ACNNNNGTAYC	2 cut(s)	12, 45
BalI	TGGCCA	2 cut(s)	20, 1458
BamHI	GGATCC	1 cut(s)	1343
BanI	GGYRCC	1 cut(s)	2874
BanII	GRGCYC	2 cut(s)	823, 2130
BarI	GAAGNNNNNNTAC	2 cut(s)	2204, 2236
BauI	CACGAG	1 cut(s)	2761
BbsI	GAAGAC	3 cut(s)	113, 443, 2475
Bbv12I	GWGCWC	6 cut(s)	330, 411, 460, 1151, 1752, 2768
BbvI	GCAGC	6 cut(s)	636, 668, 1426, 1502, 1858, 2532
BceAI	ACGGC	4 cut(s)	251, 337, 405, 1043
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BciT130I	CCWGG	2 cut(s)	355, 499
BciVI	GTATCC	1 cut(s)	40
BclI	TGATCA	3 cut(s)	483, 514, 693
BcoDI	GTCTC	4 cut(s)	148, 201, 274, 1423
BfaI	CTAG	8 cut(s)	26, 669, 711, 914, 1263, 1992, 2343, 2861
BfmI	CTRYAG	2 cut(s)	1872, 2171
BfoI	RGCGCY	1 cut(s)	622
BfrI	CTTAAG	1 cut(s)	2156
BfuAI	ACCTGC	2 cut(s)	599, 2862
BfuI	GTATCC	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	355, 499
Bme18I	GGWCC	1 cut(s)	770
BmgBI	CACGTC	2 cut(s)	142, 2890
BmgT120I	GGNCC	4 cut(s)	264, 624, 770, 1771
BmiI	GGNNCC	2 cut(s)	1345, 2876
BmrFI	CCNGG	2 cut(s)	355, 499
BmrI	ACTGGG	2 cut(s)	271, 825
BmuI	ACTGGG	2 cut(s)	271, 825
BpiI	GAAGAC	3 cut(s)	113, 443, 2475
Bpu14I	TTCGAA	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	428
Bsa29I	ATCGAT	1 cut(s)	334
BsaAI	YACGTR	1 cut(s)	2489
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	2870
BsaWI	WCCGGW	2 cut(s)	426, 1618
BsaXI	ACNNNNNCTCC	6 cut(s)	30, 60, 161, 191, 2560, 2590
Bsc4I	CCNNNNNNNGG	1 cut(s)	1780
Bse1I	ACTGG	4 cut(s)	266, 820, 1347, 2900
Bse3DI	GCAATG	1 cut(s)	1857
BseBI	CCWGG	2 cut(s)	355, 499
BseCI	ATCGAT	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	2870
BseLI	CCNNNNNNNGG	1 cut(s)	1780
BseMI	GCAATG	1 cut(s)	1857
BseMII	CTCAG	2 cut(s)	129, 561
BseNI	ACTGG	4 cut(s)	266, 820, 1347, 2900
BseRI	GAGGAG	2 cut(s)	35, 2639
BseSI	GKGCMC	1 cut(s)	1151
BseXI	GCAGC	6 cut(s)	636, 668, 1426, 1502, 1858, 2532
BseYI	CCCAGC	2 cut(s)	33, 621
BsgI	GTGCAG	3 cut(s)	675, 1036, 2678
Bsh1236I	CGCG	3 cut(s)	234, 306, 525
BshNI	GGYRCC	1 cut(s)	2874
BshVI	ATCGAT	1 cut(s)	334
BsiHKAI	GWGCWC	6 cut(s)	330, 411, 460, 1151, 1752, 2768
BsiSI	CCGG	2 cut(s)	427, 1619
BslFI	GGGAC	1 cut(s)	2697
BslI	CCNNNNNNNGG	1 cut(s)	1780
BsmAI	GTCTC	4 cut(s)	148, 201, 274, 1423
BsmBI	CGTCTC	2 cut(s)	148, 274
BsmFI	GGGAC	1 cut(s)	2697
BsmI	GAATGC	1 cut(s)	122
Bsp119I	TTCGAA	1 cut(s)	537
Bsp1286I	GDGCHC	8 cut(s)	330, 411, 460, 823, 1151, 1752, 2130, 2768
BspCNI	CTCAG	2 cut(s)	128, 562
BspDI	ATCGAT	1 cut(s)	334
BspFNI	CGCG	3 cut(s)	234, 306, 525
BspHI	TCATGA	1 cut(s)	2016
BspLI	GGNNCC	2 cut(s)	1345, 2876
BspMAI	CTGCAG	2 cut(s)	1876, 2175
BspMI	ACCTGC	2 cut(s)	599, 2862
BspPI	GGATC	4 cut(s)	715, 1338, 1351, 2861
BspT104I	TTCGAA	1 cut(s)	537
BspT107I	GGYRCC	1 cut(s)	2874
BspTI	CTTAAG	1 cut(s)	2156
BsrBI	CCGCTC	1 cut(s)	1035
BsrDI	GCAATG	1 cut(s)	1857
BsrI	ACTGG	4 cut(s)	266, 820, 1347, 2900
BssECI	CCNNGG	1 cut(s)	2870
BssNI	GRCGYC	1 cut(s)	276
BssSI	CACGAG	1 cut(s)	2761
Bst2BI	CACGAG	1 cut(s)	2761
Bst2UI	CCWGG	2 cut(s)	355, 499
Bst4CI	ACNGT	5 cut(s)	413, 455, 930, 1676, 2874
BstACI	GRCGYC	1 cut(s)	276
BstAFI	CTTAAG	1 cut(s)	2156
BstAPI	GCANNNNNTGC	1 cut(s)	415
BstBAI	YACGTR	1 cut(s)	2489
BstBI	TTCGAA	1 cut(s)	537
BstDEI	CTNAG	4 cut(s)	115, 570, 1254, 2773
BstDSI	CCRYGG	1 cut(s)	2870
BstFNI	CGCG	3 cut(s)	234, 306, 525
BstH2I	RGCGCY	1 cut(s)	622
BstHHI	GCGC	1 cut(s)	621
BstMAI	GTCTC	4 cut(s)	148, 201, 274, 1423
BstMWI	GCNNNNNNNGC	4 cut(s)	415, 499, 1868, 1952
BstNI	CCWGG	2 cut(s)	355, 499
BstNSI	RCATGY	6 cut(s)	481, 649, 705, 1862, 1950, 2980
BstSCI	CCNGG	2 cut(s)	353, 497
BstSFI	CTRYAG	2 cut(s)	1872, 2171
BstSLI	GKGCMC	1 cut(s)	1151
BstUI	CGCG	3 cut(s)	234, 306, 525
BstV1I	GCAGC	6 cut(s)	636, 668, 1426, 1502, 1858, 2532
BstV2I	GAAGAC	3 cut(s)	113, 443, 2475
BstX2I	RGATCY	3 cut(s)	707, 1343, 2866
BstYI	RGATCY	3 cut(s)	707, 1343, 2866
Bsu15I	ATCGAT	1 cut(s)	334
BsuI	GTATCC	1 cut(s)	40
BsuTUI	ATCGAT	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	2870
BtrI	CACGTC	2 cut(s)	142, 2890
BtsI	GCAGTG	1 cut(s)	2333
BtsIMutI	CAGTG	7 cut(s)	409, 462, 1325, 1354, 1681, 2333, 2907
BveI	ACCTGC	2 cut(s)	599, 2862
CaiI	CAGNNNCTG	2 cut(s)	1793, 2170
CciI	TCATGA	1 cut(s)	2016
CfoI	GCGC	1 cut(s)	621
Cfr13I	GGNCC	4 cut(s)	264, 624, 770, 1771
ClaI	ATCGAT	1 cut(s)	334
CseI	GACGC	3 cut(s)	223, 354, 2694
Csp6I	GTAC	3 cut(s)	1428, 2348, 2516
CspCI	CAANNNNNGTGG	2 cut(s)	685, 720
CviQI	GTAC	3 cut(s)	1428, 2348, 2516
DdeI	CTNAG	4 cut(s)	115, 570, 1254, 2773
DraI	TTTAAA	1 cut(s)	735
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	3 cut(s)	18, 1196, 1456
Eco147I	AGGCCT	1 cut(s)	1086
Eco24I	GRGCYC	2 cut(s)	823, 2130
Eco32I	GATATC	1 cut(s)	2248
Eco47I	GGWCC	1 cut(s)	770
Eco57I	CTGAAG	1 cut(s)	181
EcoRI	GAATTC	2 cut(s)	72, 1401
EcoRII	CCWGG	2 cut(s)	353, 497
EcoRV	GATATC	1 cut(s)	2248
EcoT22I	ATGCAT	1 cut(s)	703
EcoT38I	GRGCYC	2 cut(s)	823, 2130
Esp3I	CGTCTC	2 cut(s)	148, 274
FaqI	GGGAC	1 cut(s)	2697
FauI	CCCGC	1 cut(s)	1028
FauNDI	CATATG	1 cut(s)	1129
FbaI	TGATCA	3 cut(s)	483, 514, 693
FblI	GTMKAC	3 cut(s)	150, 1737, 2839
FriOI	GRGCYC	2 cut(s)	823, 2130
FspBI	CTAG	8 cut(s)	26, 669, 711, 914, 1263, 1992, 2343, 2861
GlaI	GCGC	1 cut(s)	620
GsaI	CCCAGC	2 cut(s)	37, 625
HaeII	RGCGCY	1 cut(s)	622
HapII	CCGG	2 cut(s)	427, 1619
HgaI	GACGC	3 cut(s)	223, 354, 2694
HhaI	GCGC	1 cut(s)	621
Hin1I	GRCGYC	1 cut(s)	276
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HincII	GTYRAC	2 cut(s)	151, 678
HindII	GTYRAC	2 cut(s)	151, 678
HindIII	AAGCTT	3 cut(s)	729, 834, 920
HpaII	CCGG	2 cut(s)	427, 1619
HphI	GGTGA	9 cut(s)	161, 320, 997, 1477, 2255, 2579, 2672, 2697, 2819
Hpy166II	GTNNAC	7 cut(s)	151, 678, 1149, 1448, 1738, 2752, 2840
Hpy188I	TCNGA	9 cut(s)	274, 344, 488, 1959, 2638, 2654, 2736, 2851, 2938
Hpy8I	GTNNAC	7 cut(s)	151, 678, 1149, 1448, 1738, 2752, 2840
Hpy99I	CGWCG	7 cut(s)	152, 239, 278, 281, 306, 2642, 2894
HpyCH4III	ACNGT	5 cut(s)	413, 455, 930, 1676, 2874
HpyCH4IV	ACGT	5 cut(s)	141, 276, 1308, 2488, 2889
HpyF10VI	GCNNNNNNNGC	4 cut(s)	415, 499, 1868, 1952
HpyF3I	CTNAG	4 cut(s)	115, 570, 1254, 2773
HpySE526I	ACGT	5 cut(s)	141, 276, 1308, 2488, 2889
Hsp92I	GRCGYC	1 cut(s)	276
HspAI	GCGC	1 cut(s)	619
Ksp22I	TGATCA	3 cut(s)	483, 514, 693
LmnI	GCTCC	8 cut(s)	244, 303, 406, 974, 1390, 1545, 2899, 2939
Lsp1109I	GCAGC	6 cut(s)	636, 668, 1426, 1502, 1858, 2532
MaeI	CTAG	8 cut(s)	26, 669, 711, 914, 1263, 1992, 2343, 2861
MaeII	ACGT	5 cut(s)	141, 276, 1308, 2488, 2889
MaeIII	GTNAC	9 cut(s)	308, 781, 997, 1312, 1627, 1837, 1854, 2566, 2885
MbiI	CCGCTC	1 cut(s)	1035
MfeI	CAATTG	2 cut(s)	1521, 2108
MflI	RGATCY	3 cut(s)	707, 1343, 2866
MhlI	GDGCHC	8 cut(s)	330, 411, 460, 823, 1151, 1752, 2130, 2768
MlsI	TGGCCA	2 cut(s)	20, 1458
MluI	ACGCGT	1 cut(s)	232
MluNI	TGGCCA	2 cut(s)	20, 1458
MlyI	GAGTC	5 cut(s)	107, 581, 778, 2465, 2826
MmeI	TCCRAC	8 cut(s)	297, 322, 748, 1954, 2275, 2282, 2661, 2743
Mox20I	TGGCCA	2 cut(s)	20, 1458
Mph1103I	ATGCAT	1 cut(s)	703
MroXI	GAANNNNTTC	2 cut(s)	362, 2216
MscI	TGGCCA	2 cut(s)	20, 1458
MseI	TTAA	8 cut(s)	734, 1065, 1170, 1332, 2115, 2157, 2594, 2679
MslI	CAYNNNNRTG	1 cut(s)	2507
Msp20I	TGGCCA	2 cut(s)	20, 1458
MspA1I	CMGCKG	1 cut(s)	162
MspCI	CTTAAG	1 cut(s)	2156
MspI	CCGG	2 cut(s)	427, 1619
MspR9I	CCNGG	2 cut(s)	355, 499
MunI	CAATTG	2 cut(s)	1521, 2108
Mva1269I	GAATGC	1 cut(s)	122
MvaI	CCWGG	2 cut(s)	355, 499
MvnI	CGCG	3 cut(s)	234, 306, 525
MwoI	GCNNNNNNNGC	4 cut(s)	415, 499, 1868, 1952
NdeI	CATATG	1 cut(s)	1129
NlaIV	GGNNCC	2 cut(s)	1345, 2876
NmuCI	GTSAC	4 cut(s)	308, 781, 1312, 2885
NsiI	ATGCAT	1 cut(s)	703
NspI	RCATGY	6 cut(s)	481, 649, 705, 1862, 1950, 2980
NspV	TTCGAA	1 cut(s)	537
PagI	TCATGA	1 cut(s)	2016
PceI	AGGCCT	1 cut(s)	1086
PciI	ACATGT	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PctI	GAATGC	1 cut(s)	122
PdmI	GAANNNNTTC	2 cut(s)	362, 2216
PflFI	GACNNNGTC	2 cut(s)	278, 2835
PleI	GAGTC	5 cut(s)	107, 580, 778, 2465, 2826
PpsI	GAGTC	5 cut(s)	107, 580, 778, 2465, 2826
Ppu21I	YACGTR	1 cut(s)	2489
PscI	ACATGT	1 cut(s)	477
PshBI	ATTAAT	1 cut(s)	1332
PsiI	TTATAA	2 cut(s)	474, 2426
Psp1406I	AACGTT	1 cut(s)	1308
Psp6I	CCWGG	2 cut(s)	353, 497
PspFI	CCCAGC	2 cut(s)	33, 621
PspGI	CCWGG	2 cut(s)	353, 497
PspN4I	GGNNCC	2 cut(s)	1345, 2876
PspPI	GGNCC	4 cut(s)	264, 624, 770, 1771
PstI	CTGCAG	2 cut(s)	1876, 2175
PstNI	CAGNNNCTG	2 cut(s)	1793, 2170
PsuI	RGATCY	3 cut(s)	707, 1343, 2866
PsyI	GACNNNGTC	2 cut(s)	278, 2835
RsaI	GTAC	3 cut(s)	1429, 2349, 2517
RsaNI	GTAC	3 cut(s)	1428, 2348, 2516
RseI	CAYNNNNRTG	1 cut(s)	2507
SalI	GTCGAC	1 cut(s)	149
SaqAI	TTAA	8 cut(s)	734, 1065, 1170, 1332, 2115, 2157, 2594, 2679
Sau96I	GGNCC	4 cut(s)	264, 624, 770, 1771
SchI	GAGTC	5 cut(s)	107, 581, 778, 2465, 2826
ScrFI	CCNGG	2 cut(s)	355, 499
SduI	GDGCHC	8 cut(s)	330, 411, 460, 823, 1151, 1752, 2130, 2768
SfcI	CTRYAG	2 cut(s)	1872, 2171
SfuI	TTCGAA	1 cut(s)	537
SinI	GGWCC	1 cut(s)	770
SmiMI	CAYNNNNRTG	1 cut(s)	2507
SmlI	CTYRAG	2 cut(s)	443, 2156
SmoI	CTYRAG	2 cut(s)	443, 2156
SseBI	AGGCCT	1 cut(s)	1086
SspI	AATATT	3 cut(s)	793, 827, 898
SspMI	CTAG	8 cut(s)	26, 669, 711, 914, 1263, 1992, 2343, 2861
StuI	AGGCCT	1 cut(s)	1086
StyD4I	CCNGG	2 cut(s)	353, 497
TaaI	ACNGT	5 cut(s)	413, 455, 930, 1676, 2874
TaiI	ACGT	5 cut(s)	144, 279, 1311, 2491, 2892
TaqII	GACCGA	3 cut(s)	125, 663, 2825
TauI	GCSGC	5 cut(s)	122, 165, 195, 528, 1160
Tru1I	TTAA	8 cut(s)	734, 1065, 1170, 1332, 2115, 2157, 2594, 2679
Tru9I	TTAA	8 cut(s)	734, 1065, 1170, 1332, 2115, 2157, 2594, 2679
TscAI	CASTG	7 cut(s)	416, 469, 1332, 1354, 1681, 2333, 2907
TseFI	GTSAC	4 cut(s)	308, 781, 1312, 2885
TseI	GCWGC	6 cut(s)	649, 656, 1439, 1490, 1871, 2545
Tsp45I	GTSAC	4 cut(s)	308, 781, 1312, 2885
TspGWI	ACGGA	5 cut(s)	136, 257, 290, 863, 1796
TspRI	CASTG	7 cut(s)	416, 469, 1332, 1354, 1681, 2333, 2907
Tth111I	GACNNNGTC	2 cut(s)	278, 2835
Vha464I	CTTAAG	1 cut(s)	2156
VneI	GTGCAC	1 cut(s)	1147
VpaK11BI	GGWCC	1 cut(s)	770
VspI	ATTAAT	1 cut(s)	1332
XapI	RAATTY	5 cut(s)	72, 1401, 1555, 1716, 2031
XbaI	TCTAGA	1 cut(s)	1991
XceI	RCATGY	6 cut(s)	481, 649, 705, 1862, 1950, 2980
XcmI	CCANNNNNNNNNTGG	2 cut(s)	634, 2509
XmiI	GTMKAC	3 cut(s)	150, 1737, 2839
XmnI	GAANNNNTTC	2 cut(s)	362, 2216
XspI	CTAG	8 cut(s)	26, 669, 711, 914, 1263, 1992, 2343, 2861
ZraI	GACGTC	1 cut(s)	277
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.