Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007415.1

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

214464 .. 215357

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atgaacctggcaggaggaaacatcaaaatagctgaggagactaattttttcccaaattccaagtcgaagtacctcgaacccaaacttccacttaattatgacaatgccactcatcctcactttagctgcaagctcgcccctcttggcttctccttgtcccaaggctcgccccactcggcatctcctcgcctcaaggctcgcccctctcggcatctcctcgcctcaaggttcgcccctctcggcatctcctcgcctcaaggttcgcccctcttggcatctcccttacaaagtttcacggtagcactactcctaagtgcggctcgtgacacaaggcaatgtaaaagctgtggcctccggttcaagtgtgaagaacagcacagcagccatatggattggcatgtcaagaagaaccagatatccaaaacccgcaagcagaagccctctcgtaacctttatgcaactacaagcgtgtggcttgttactgatgtagaggctgagactgaggcattaccttctggtgtagttttgtgcgctgctgacaccaatggcgtggcggaaaggaaaaggaagactagtgatgaagaaatggttgttcctgcggacgaggatcagagtaaatgtgccttatgcacagatgcttttgttgagttttatagtcatgagaaagatgagtggatgtataaaggtgctgtttacttgaatgtgcctcaagggccagcgccggagatggattggtcacagttgggtcctatagtccatgccaaatgctggtcgggtagtaggaaacgtctgcggaggacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

267

Amino Acids

29.66

Weight (kDa)

9.06

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_PCFS4	PF23228	193 - 258	2.1e-27	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	768
AciI	CCGC	5 cut(s)	317, 427, 554, 599, 793
AclWI	GGATC	1 cut(s)	615
AcsI	RAATTY	1 cut(s)	55
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	2 cut(s)	316, 768
AgsI	TTSAA	2 cut(s)	361, 700
AhlI	ACTAGT	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	6
AloI	GAACNNNNNNTCC	2 cut(s)	401, 433
AluBI	AGCT	4 cut(s)	32, 126, 133, 345
AluI	AGCT	4 cut(s)	32, 126, 133, 345
Alw26I	GTCTC	2 cut(s)	32, 491
AlwI	GGATC	1 cut(s)	615
AoxI	GGCC	2 cut(s)	349, 713
ApeKI	GCWGC	3 cut(s)	126, 381, 533
ApoI	RAATTY	1 cut(s)	55
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspLEI	GCGC	2 cut(s)	533, 721
AspS9I	GGNCC	2 cut(s)	713, 746
AvaII	GGWCC	1 cut(s)	746
BauI	CACGAG	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	575
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	113, 393, 520
BccI	CCATC	1 cut(s)	721
BciT130I	CCWGG	1 cut(s)	8
BcoDI	GTCTC	2 cut(s)	32, 491
BcuI	ACTAGT	1 cut(s)	572
BfaI	CTAG	1 cut(s)	573
BfmI	CTRYAG	1 cut(s)	750
BfoI	RGCGCY	1 cut(s)	722
BglI	GCCNNNNNGGC	1 cut(s)	712
BisI	GCNGC	4 cut(s)	127, 318, 382, 534
BlsI	GCNGC	4 cut(s)	128, 319, 383, 535
Bme1390I	CCNGG	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	746
BmgT120I	GGNCC	2 cut(s)	713, 746
BmiI	GGNNCC	1 cut(s)	747
BmrFI	CCNGG	1 cut(s)	8
BmsI	GCATC	5 cut(s)	188, 220, 252, 284, 625
BpiI	GAAGAC	1 cut(s)	575
Bpu10I	CCTNAGC	1 cut(s)	33
BpuEI	CTTGAG	4 cut(s)	176, 208, 240, 693
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 768
Bse3DI	GCAATG	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	2 cut(s)	112, 681
BseLI	CCNNNNNNNGG	2 cut(s)	316, 768
BseMI	GCAATG	1 cut(s)	341
BseMII	CTCAG	3 cut(s)	24, 486, 492
BseRI	GAGGAG	4 cut(s)	50, 174, 206, 238
BseXI	GCAGC	3 cut(s)	113, 393, 520
BshFI	GGCC	2 cut(s)	351, 715
BsiSI	CCGG	2 cut(s)	355, 722
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	316, 768
BsmAI	GTCTC	2 cut(s)	32, 491
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	351, 715
Bsp143I	GATC	1 cut(s)	607
BspACI	CCGC	5 cut(s)	317, 427, 554, 599, 793
BspANI	GGCC	2 cut(s)	351, 715
BspCNI	CTCAG	3 cut(s)	25, 487, 493
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	1 cut(s)	747
BspPI	GGATC	1 cut(s)	615
BsrDI	GCAATG	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	1 cut(s)	607
BssSI	CACGAG	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	160
Bst2BI	CACGAG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	298, 741
BstC8I	GCNNGC	6 cut(s)	131, 135, 167, 199, 431, 717
BstDEI	CTNAG	4 cut(s)	33, 311, 495, 501
BstF5I	GGATG	2 cut(s)	112, 681
BstH2I	RGCGCY	1 cut(s)	722
BstHHI	GCGC	2 cut(s)	533, 721
BstKTI	GATC	1 cut(s)	610
BstMAI	GTCTC	2 cut(s)	32, 491
BstMBI	GATC	1 cut(s)	607
BstMWI	GCNNNNNNNGC	1 cut(s)	712
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	6
BstSFI	CTRYAG	1 cut(s)	750
BstV1I	GCAGC	3 cut(s)	113, 393, 520
BstV2I	GAAGAC	1 cut(s)	575
BstXI	CCANNNNNNTGG	1 cut(s)	550
BsuRI	GGCC	2 cut(s)	351, 715
BtsCI	GGATG	2 cut(s)	112, 681
Cac8I	GCNNGC	6 cut(s)	131, 135, 167, 199, 431, 717
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	2 cut(s)	533, 721
Cfr13I	GGNCC	2 cut(s)	713, 746
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	3 cut(s)	398, 659, 758
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	4 cut(s)	33, 311, 495, 501
DpnI	GATC	1 cut(s)	609
DpnII	GATC	1 cut(s)	607
EciI	GGCGGA	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	746
EcoO109I	RGGNCCY	1 cut(s)	746
EcoRII	CCWGG	1 cut(s)	6
EcoRV	GATATC	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	3 cut(s)	401, 662, 761
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	3 cut(s)	397, 658, 757
FauI	CCCGC	1 cut(s)	434
FauNDI	CATATG	1 cut(s)	387
Fnu4HI	GCNGC	4 cut(s)	127, 318, 382, 534
FokI	GGATG	2 cut(s)	99, 688
Fsp4HI	GCNGC	4 cut(s)	127, 318, 382, 534
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	2 cut(s)	532, 720
GluI	GCNGC	4 cut(s)	127, 318, 382, 534
HaeII	RGCGCY	1 cut(s)	722
HaeIII	GGCC	2 cut(s)	351, 715
HapII	CCGG	2 cut(s)	355, 722
HhaI	GCGC	2 cut(s)	533, 721
Hin1II	CATG	3 cut(s)	401, 662, 761
Hin6I	GCGC	2 cut(s)	531, 719
HinP1I	GCGC	2 cut(s)	531, 719
HpaII	CCGG	2 cut(s)	355, 722
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	1 cut(s)	612
Hpy188III	TCNNGA	3 cut(s)	323, 403, 659
Hpy8I	GTNNAC	1 cut(s)	694
HpyAV	CCTTC	1 cut(s)	522
HpyCH4III	ACNGT	2 cut(s)	298, 741
HpyCH4IV	ACGT	1 cut(s)	787
HpyCH4V	TGCA	3 cut(s)	129, 458, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	712
HpyF3I	CTNAG	4 cut(s)	33, 311, 495, 501
HpySE526I	ACGT	1 cut(s)	787
Hsp92II	CATG	3 cut(s)	401, 662, 761
HspAI	GCGC	2 cut(s)	531, 719
Kzo9I	GATC	1 cut(s)	607
LpnPI	CCDG	8 cut(s)	20, 368, 425, 501, 609, 729, 735, 754
Lsp1109I	GCAGC	3 cut(s)	113, 393, 520
LweI	GCATC	5 cut(s)	188, 220, 252, 284, 625
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	1 cut(s)	787
MaeIII	GTNAC	4 cut(s)	323, 446, 478, 735
MalI	GATC	1 cut(s)	609
MboI	GATC	1 cut(s)	607
MboII	GAAGA	4 cut(s)	380, 418, 580, 593
MluCI	AATT	3 cut(s)	43, 55, 94
MseI	TTAA	1 cut(s)	93
MspI	CCGG	2 cut(s)	355, 722
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	712
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	1 cut(s)	607
NlaIII	CATG	3 cut(s)	401, 662, 761
NlaIV	GGNNCC	1 cut(s)	747
NmeAIII	GCCGAG	3 cut(s)	155, 187, 219
NmuCI	GTSAC	2 cut(s)	323, 735
NspI	RCATGY	1 cut(s)	401
PagI	TCATGA	1 cut(s)	658
PflMI	CCANNNNNTGG	1 cut(s)	768
PkrI	GCNGC	4 cut(s)	128, 319, 383, 535
PpuMI	RGGWCCY	1 cut(s)	746
Psp5II	RGGWCCY	1 cut(s)	746
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	747
PspPI	GGNCC	2 cut(s)	713, 746
PspPPI	RGGWCCY	1 cut(s)	746
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	4 cut(s)	127, 318, 382, 534
Sau3AI	GATC	1 cut(s)	607
Sau96I	GGNCC	2 cut(s)	713, 746
ScrFI	CCNGG	1 cut(s)	8
SfaNI	GCATC	5 cut(s)	188, 220, 252, 284, 625
SfcI	CTRYAG	1 cut(s)	750
SinI	GGWCC	1 cut(s)	746
SmlI	CTYRAG	4 cut(s)	191, 223, 255, 708
SmoI	CTYRAG	4 cut(s)	191, 223, 255, 708
SpeI	ACTAGT	1 cut(s)	572
Sse9I	AATT	3 cut(s)	43, 55, 94
SsiI	CCGC	5 cut(s)	317, 427, 554, 599, 793
SspMI	CTAG	1 cut(s)	573
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	298, 741
TaiI	ACGT	1 cut(s)	790
TaqI	TCGA	2 cut(s)	65, 75
TasI	AATT	3 cut(s)	43, 55, 94
TauI	GCSGC	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TseFI	GTSAC	2 cut(s)	323, 735
TseI	GCWGC	3 cut(s)	126, 381, 533
Tsp45I	GTSAC	2 cut(s)	323, 735
TspDTI	ATGAA	2 cut(s)	17, 594
Van91I	CCANNNNNTGG	1 cut(s)	768
VpaK11BI	GGWCC	1 cut(s)	746
XapI	RAATTY	1 cut(s)	55
XceI	RCATGY	1 cut(s)	401
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.