Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007538.1

Orthogroup ID

OG0002223

Physical Location & Seq

Genomic Coordinates Reverse (-)

22979 .. 23683

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggcaacgtgtaccagaatcagtgctgcttttcttcttctatgttggttgatatgtttctcagggtttggtttctcacaaacagttgcatcgcttggtatcaacttcggccaactcggcgacaatttgctacaaccacagcaagttatgagcctcttaaggtccaacaatatcacaaaaacaagaatttacgacaccaatccgcagataccaactgcattctcaaattcggatattgagctcattgtgacagtggaaaacgaaatgctaagccaattaaccaacccccaagcagcccttcaatgggttactacacacatcaagccttattttctctccacgaaaatcacaggcattatgatagggaacgagattgatgcaacggatttgctagctagccttgtaccggccgtgtccagcattcaaaaggccctatctcagttaggtcttgattcacacatgaaggtgtcatcgcctttttctttttcggtgatggaagagtcttatccaccttctgctggcagtttcaaaatcgaggtctcgggtgtgatgtcacaattgttacagtttttgtcaagcacaaaggctccgttttggatcaatgcatatccttactttgcgtacgagggcaactcgaaagatattcctctagactatgtgcttttcagtaatgccggttcatcagcaggagtgactgacccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

234

Amino Acids

25.48

Weight (kDa)

4.77

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	32 - 229	1.2e-42	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30080 AT1G30080 AT4G18340 AT4G18340
fragaria_vesca	FvH4_3g05490 FvH4_3g05490 FvH4_4g29790 FvH4_4g29811 FvH4_4g29820
malus_domestica	MD05G1283400.v1.1 MD10G1261700.v1.1
prunus_persica	Prupe.4G081200_v2.0.a1
pyrus_communis	pycom10g21790
rosa_chinensis	RchiOBHm_Chr4g0438021 RchiOBHm_Chr4g0438071 RchiOBHm_Chr5g0006351 RchiOBHm_Chr5g0014251
rosa_laevigata	RLG00000006390 RLG00000032094
rosa_multiflora	Rmu_sc0004728.1_g000007 Rmu_sc0007538.1_g000003 Rmu_sc0027297.1_g000001 Rmu_ssc0000120.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062320 Rroxscaffold_5G00379160 Rroxscaffold_5G00379200
rosa_rugosa	Rorug04G0306300 Rorug04G0306500 Rorug05G0016600
rosa_samantha	Rh4AG357900 Rh4AG358200 Rh4BG368800 Rh4CG383200 Rh4DG363900 Rh5AG049100 Rh5AG110900 Rh5BG108200 Rh5CG056600 Rh5DG106300
rosa_wichuraiana	Rw0G006270 Rw0G011480 Rw0G016210 Rw5G009670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	1 cut(s)	605
AcoI	YGGCCR	2 cut(s)	109, 408
AcsI	RAATTY	2 cut(s)	186, 226
AfaI	GTAC	3 cut(s)	13, 405, 623
AfiI	CCNNNNNNNGG	4 cut(s)	303, 304, 406, 518
AflII	CTTAAG	1 cut(s)	157
AflIII	ACRYGT	1 cut(s)	8
AgsI	TTSAA	3 cut(s)	302, 425, 529
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AluBI	AGCT	2 cut(s)	241, 395
AluI	AGCT	2 cut(s)	241, 395
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	544
AlwI	GGATC	1 cut(s)	605
Ama87I	CYCGRG	1 cut(s)	541
AoxI	GGCC	3 cut(s)	109, 408, 429
ApeKI	GCWGC	2 cut(s)	26, 293
ApoI	RAATTY	2 cut(s)	186, 226
ArsI	GACNNNNNNTTYG	2 cut(s)	522, 554
AspS9I	GGNCC	2 cut(s)	162, 430
AsuHPI	GGTGA	1 cut(s)	502
AsuNHI	GCTAGC	2 cut(s)	391, 395
AvaI	CYCGRG	1 cut(s)	541
AvaII	GGWCC	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	13, 305
BccI	CCATC	1 cut(s)	487
BceAI	ACGGC	1 cut(s)	395
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	3 cut(s)	392, 396, 650
BfrI	CTTAAG	1 cut(s)	157
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	2 cut(s)	27, 294
BlpI	GCTNAGC	1 cut(s)	269
BlsI	GCNGC	2 cut(s)	28, 295
Bme18I	GGWCC	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	541
BmgT120I	GGNCC	2 cut(s)	162, 430
BmiI	GGNNCC	1 cut(s)	588
BmsI	GCATC	2 cut(s)	98, 367
BmtI	GCTAGC	2 cut(s)	395, 399
BplI	GAGNNNNNCTC	2 cut(s)	617, 649
Bpu1102I	GCTNAGC	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	544
BsaXI	ACNNNNNCTCC	2 cut(s)	571, 601
Bsc4I	CCNNNNNNNGG	4 cut(s)	303, 304, 406, 518
Bse118I	RCCGGY	2 cut(s)	406, 674
BseLI	CCNNNNNNNGG	4 cut(s)	303, 304, 406, 518
BseMII	CTCAG	2 cut(s)	75, 452
BseX3I	CGGCCG	1 cut(s)	408
BseXI	GCAGC	2 cut(s)	13, 305
Bsh1285I	CGRYCG	1 cut(s)	411
BshFI	GGCC	3 cut(s)	111, 410, 431
BsiEI	CGRYCG	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	541
BsiSI	CCGG	2 cut(s)	407, 675
BsiWI	CGTACG	1 cut(s)	621
BslI	CCNNNNNNNGG	4 cut(s)	303, 304, 406, 518
BsmAI	GTCTC	1 cut(s)	544
BsmI	GAATGC	2 cut(s)	218, 420
BsnI	GGCC	3 cut(s)	111, 410, 431
Bso31I	GGTCTC	1 cut(s)	544
BsoBI	CYCGRG	1 cut(s)	541
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	597
Bsp1720I	GCTNAGC	1 cut(s)	269
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	3 cut(s)	111, 410, 431
BspCNI	CTCAG	2 cut(s)	74, 451
BspLI	GGNNCC	1 cut(s)	588
BspOI	GCTAGC	2 cut(s)	395, 399
BspPI	GGATC	1 cut(s)	605
BspTI	CTTAAG	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	544
BsrFI	RCCGGY	2 cut(s)	406, 674
BssAI	RCCGGY	2 cut(s)	406, 674
BssMI	GATC	1 cut(s)	597
Bst4CI	ACNGT	3 cut(s)	85, 253, 567
Bst6I	CTCTTC	1 cut(s)	492
BstAFI	CTTAAG	1 cut(s)	157
BstC8I	GCNNGC	3 cut(s)	393, 397, 520
BstDEI	CTNAG	4 cut(s)	61, 269, 438, 702
BstKTI	GATC	1 cut(s)	600
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	1 cut(s)	597
BstMCI	CGRYCG	1 cut(s)	411
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	13, 305
BstZI	CGGCCG	1 cut(s)	408
BsuRI	GGCC	3 cut(s)	111, 410, 431
BtgZI	GCGATG	2 cut(s)	75, 456
BtsIMutI	CAGTG	2 cut(s)	28, 258
Cac8I	GCNNGC	3 cut(s)	393, 397, 520
Cfr10I	RCCGGY	2 cut(s)	406, 674
Cfr13I	GGNCC	2 cut(s)	162, 430
Csp6I	GTAC	3 cut(s)	12, 404, 622
CviAII	CATG	1 cut(s)	460
CviQI	GTAC	3 cut(s)	12, 404, 622
DdeI	CTNAG	4 cut(s)	61, 269, 438, 702
DpnI	GATC	1 cut(s)	599
DpnII	GATC	1 cut(s)	597
EaeI	YGGCCR	2 cut(s)	109, 408
EagI	CGGCCG	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Ecl136II	GAGCTC	1 cut(s)	241
EclXI	CGGCCG	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	544
Eco47I	GGWCC	1 cut(s)	162
Eco52I	CGGCCG	1 cut(s)	408
Eco53kI	GAGCTC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	541
EcoICRI	GAGCTC	1 cut(s)	241
EcoO109I	RGGNCCY	1 cut(s)	430
EcoT22I	ATGCAT	1 cut(s)	607
EcoT38I	GRGCYC	1 cut(s)	243
FaeI	CATG	1 cut(s)	463
FaiI	YATR	7 cut(s)	43, 55, 149, 359, 461, 607, 657
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FatI	CATG	1 cut(s)	459
Fnu4HI	GCNGC	2 cut(s)	27, 294
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	2 cut(s)	27, 294
FspBI	CTAG	3 cut(s)	392, 396, 650
GluI	GCNGC	2 cut(s)	27, 294
HaeIII	GGCC	3 cut(s)	111, 410, 431
HapII	CCGG	2 cut(s)	407, 675
Hin1II	CATG	1 cut(s)	463
HinfI	GANTC	3 cut(s)	18, 452, 500
HpaII	CCGG	2 cut(s)	407, 675
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	2 cut(s)	449, 650
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	3 cut(s)	308, 457, 522
HpyCH4III	ACNGT	3 cut(s)	85, 253, 567
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	4 cut(s)	89, 218, 380, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	4 cut(s)	61, 269, 438, 702
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	463
Kzo9I	GATC	1 cut(s)	597
LmnI	GCTCC	1 cut(s)	592
LpnPI	CCDG	8 cut(s)	28, 48, 336, 420, 430, 504, 672, 688
Lsp1109I	GCAGC	2 cut(s)	13, 305
LweI	GCATC	2 cut(s)	98, 367
MaeI	CTAG	3 cut(s)	392, 396, 650
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	5 cut(s)	247, 307, 552, 561, 691
MalI	GATC	1 cut(s)	599
MboI	GATC	1 cut(s)	597
MboII	GAAGA	3 cut(s)	26, 29, 509
MfeI	CAATTG	1 cut(s)	557
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	5 cut(s)	124, 186, 226, 275, 557
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	4 cut(s)	164, 529, 619, 657
Mph1103I	ATGCAT	1 cut(s)	607
MseI	TTAA	2 cut(s)	158, 278
MslI	CAYNNNNRTG	1 cut(s)	464
MspCI	CTTAAG	1 cut(s)	157
MspI	CCGG	2 cut(s)	407, 675
MunI	CAATTG	1 cut(s)	557
Mva1269I	GAATGC	2 cut(s)	218, 420
MwoI	GCNNNNNNNGC	1 cut(s)	117
NdeII	GATC	1 cut(s)	597
NheI	GCTAGC	2 cut(s)	391, 395
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	1 cut(s)	588
NmeAIII	GCCGAG	1 cut(s)	96
NmuCI	GTSAC	3 cut(s)	247, 552, 691
NsiI	ATGCAT	1 cut(s)	607
PctI	GAATGC	2 cut(s)	218, 420
PfeI	GAWTC	2 cut(s)	18, 452
Pfl23II	CGTACG	1 cut(s)	621
PkrI	GCNGC	2 cut(s)	28, 295
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
Psp124BI	GAGCTC	1 cut(s)	243
PspLI	CGTACG	1 cut(s)	621
PspN4I	GGNNCC	1 cut(s)	588
PspPI	GGNCC	2 cut(s)	162, 430
PsrI	GAACNNNNNNTAC	2 cut(s)	661, 693
RsaI	GTAC	3 cut(s)	13, 405, 623
RsaNI	GTAC	3 cut(s)	12, 404, 622
RseI	CAYNNNNRTG	1 cut(s)	464
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	158, 278
SatI	GCNGC	2 cut(s)	27, 294
Sau3AI	GATC	1 cut(s)	597
Sau96I	GGNCC	2 cut(s)	162, 430
SchI	GAGTC	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	8 cut(s)	11, 164, 243, 397, 448, 468, 514, 540
SfaNI	GCATC	2 cut(s)	98, 367
SinI	GGWCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
Sse9I	AATT	5 cut(s)	124, 186, 226, 275, 557
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	3 cut(s)	392, 396, 650
SstI	GAGCTC	1 cut(s)	243
TaaI	ACNGT	3 cut(s)	85, 253, 567
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	2 cut(s)	534, 635
TasI	AATT	5 cut(s)	124, 186, 226, 275, 557
TfiI	GAWTC	2 cut(s)	18, 452
Tru1I	TTAA	2 cut(s)	158, 278
Tru9I	TTAA	2 cut(s)	158, 278
TscAI	CASTG	2 cut(s)	28, 258
TseFI	GTSAC	3 cut(s)	247, 552, 691
TseI	GCWGC	2 cut(s)	26, 293
Tsp45I	GTSAC	3 cut(s)	247, 552, 691
TspDTI	ATGAA	2 cut(s)	476, 669
TspGWI	ACGGA	2 cut(s)	398, 579
TspRI	CASTG	2 cut(s)	28, 258
Vha464I	CTTAAG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	2 cut(s)	186, 226
XbaI	TCTAGA	1 cut(s)	649
XspI	CTAG	3 cut(s)	392, 396, 650
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.